Wall clock time and date at job start Mon Mar 30 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35717 * 116.99747 * 2 1 4 4 C 1.35214 * 122.89453 * 269.96378 * 3 2 1 5 5 C 1.43204 * 124.42396 * 0.05289 * 4 3 2 6 6 N 3.67369 * 97.82541 * 285.63859 * 2 1 3 7 7 S 1.75222 * 111.15796 * 180.02562 * 4 3 2 8 8 C 1.75972 * 92.50325 * 359.97438 * 7 4 3 9 9 C 1.40640 * 129.90577 * 180.02562 * 8 7 4 10 10 C 1.35600 * 120.91031 * 179.82906 * 9 8 7 11 11 C 1.41200 * 120.14258 * 0.42404 * 10 9 8 12 12 C 1.41238 * 120.07353 * 179.79920 * 11 10 9 13 13 H 1.08006 * 120.00183 * 154.95464 * 12 11 10 14 14 C 1.39839 * 120.00144 * 334.67950 * 12 11 10 15 15 N 1.30917 * 119.99522 * 342.33671 * 14 12 11 16 16 Si 1.86797 * 120.00120 * 162.34088 * 14 12 11 17 17 H 1.48500 * 109.47302 * 59.99744 * 16 14 12 18 18 H 1.48504 * 109.46852 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46860 * 299.99403 * 16 14 12 20 20 C 1.39890 * 119.85080 * 359.51823 * 11 10 9 21 21 C 1.40235 * 110.06448 * 0.02562 * 8 7 4 22 22 H 1.08994 * 109.47569 * 300.00041 * 1 2 3 23 23 H 1.09004 * 109.47407 * 60.00230 * 1 2 3 24 24 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.54777 * 359.97438 * 9 8 7 26 26 H 1.08001 * 119.93344 * 180.19990 * 10 9 8 27 27 H 0.96998 * 119.99549 * 180.02562 * 15 14 12 28 28 H 1.08004 * 119.99487 * 180.24967 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 2.3791 1.8633 -1.1354 5 6 2.1282 1.3714 -2.4566 6 7 1.9292 0.9811 -3.5048 7 16 3.1583 3.3917 -0.7789 8 6 3.0287 3.1408 0.9580 9 6 3.4456 3.9611 2.0217 10 6 3.2489 3.5852 3.3096 11 6 2.6262 2.3519 3.6011 12 6 2.4259 1.9600 4.9432 13 1 1.6336 1.2693 5.1915 14 6 3.2571 2.4616 5.9496 15 7 4.4086 3.0015 5.6389 16 14 2.7245 2.3613 7.7372 17 1 2.5223 0.9394 8.1145 18 1 3.7751 2.9576 8.6009 19 1 1.4530 3.1069 7.9174 20 6 2.2029 1.5218 2.5577 21 6 2.4032 1.9136 1.2215 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.9269 4.9044 1.8098 26 1 3.5724 4.2289 4.1142 27 1 4.9853 3.3491 6.3371 28 1 1.7227 0.5798 2.7781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:38 Heat of formation + Delta-G solvation = 12.880293 kcal Electronic energy + Delta-G solvation = -15856.804905 eV Core-core repulsion = 13156.825447 eV Total energy + Delta-G solvation = -2699.979458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75513 -39.03902 -37.74181 -36.06523 -34.27489 -31.82370 -30.54522 -28.27390 -27.37093 -24.78983 -23.17037 -21.98609 -19.93887 -19.24636 -18.24960 -17.23590 -16.92658 -16.78571 -16.47836 -15.38712 -15.25779 -14.96272 -14.89289 -14.33677 -14.12730 -13.90290 -13.86140 -13.44536 -13.05124 -12.83368 -12.68063 -12.53932 -12.04218 -11.90995 -11.61420 -11.41998 -10.98828 -10.97609 -10.16584 -9.31623 -8.77316 -8.44436 -6.36032 -0.64097 0.26319 0.72937 1.05209 1.18959 1.44185 1.51349 1.55890 1.68137 2.03326 2.21933 2.56877 2.71067 2.81736 3.56831 4.06081 4.20284 4.30771 4.39976 4.53868 4.68769 4.84035 4.93326 5.02880 5.22910 5.41993 5.56221 5.69796 5.96025 6.13225 6.22156 6.30193 6.51851 6.83082 6.86622 8.26324 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.005730 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.969395 B = 4885.538121 C = 5595.425398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.337 6.337 3 C 0.169 3.831 4 C -0.179 4.179 5 C 0.308 3.692 6 N -0.435 5.435 7 S 0.172 5.828 8 C -0.225 4.225 9 C -0.080 4.080 10 C -0.120 4.120 11 C 0.089 3.911 12 C -0.485 4.485 13 H 0.082 0.918 14 C 0.041 3.959 15 N -0.816 5.816 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.212 4.212 21 C -0.071 4.071 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.123 0.877 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.294 0.706 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 1.414 -2.749 4.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.254 6.254 3 C 0.104 3.896 4 C -0.298 4.298 5 C -0.007 4.007 6 N -0.113 5.113 7 S 0.436 5.564 8 C -0.341 4.341 9 C -0.102 4.102 10 C -0.141 4.141 11 C 0.085 3.915 12 C -0.513 4.513 13 H 0.100 0.900 14 C -0.176 4.176 15 N -0.441 5.441 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.235 4.235 21 C -0.077 4.077 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.146 1.908 -5.238 6.401 hybrid contribution -0.599 -1.022 2.093 2.404 sum -3.746 0.887 -3.145 4.971 Atomic orbital electron populations 1.23294 0.76310 1.05260 1.01352 1.85874 1.22109 1.23336 1.94078 1.19002 0.95422 0.85672 0.89523 1.19751 1.17493 1.04015 0.88514 1.24159 0.92755 0.92693 0.91060 1.81197 1.10286 1.08791 1.11038 1.83167 1.63710 1.12189 0.97366 1.22232 1.13855 1.01042 0.96962 1.20085 1.00551 0.98769 0.90782 1.21208 1.00945 0.96645 0.95336 1.17755 0.89558 0.90802 0.93374 1.19806 1.14596 1.25156 0.91772 0.89982 1.26719 0.93123 0.91845 1.05932 1.69839 1.07586 1.28548 1.38115 0.85236 0.79252 0.79803 0.75446 1.18657 1.19248 1.18259 1.20779 1.12794 1.00354 0.89583 1.18897 1.01916 0.94024 0.92871 0.92641 0.93128 0.85910 0.85314 0.85972 0.89530 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.13 113.37 1.26 2.11 15 2 O -0.34 -11.87 10.22 -90.39 -0.92 -12.79 15 3 C 0.17 6.33 6.00 23.44 0.14 6.47 15 4 C -0.18 -6.15 6.20 22.82 0.14 -6.01 15 5 C 0.31 10.33 15.50 88.33 1.37 11.70 15 6 N -0.43 -15.03 18.54 19.00 0.35 -14.68 15 7 S 0.17 5.51 23.14 -56.49 -1.31 4.21 15 8 C -0.23 -8.92 6.49 23.34 0.15 -8.77 15 9 C -0.08 -3.23 9.98 22.25 0.22 -3.00 15 10 C -0.12 -5.52 8.60 22.39 0.19 -5.33 15 11 C 0.09 4.32 5.55 -21.41 -0.12 4.20 15 12 C -0.48 -23.52 9.02 23.40 0.21 -23.31 15 13 H 0.08 3.84 7.91 -2.91 -0.02 3.82 15 14 C 0.04 1.83 5.13 85.22 0.44 2.27 15 15 N -0.82 -38.11 10.99 21.81 0.24 -37.87 15 16 Si 0.98 34.32 29.60 68.60 2.03 36.36 15 17 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 18 H -0.27 -8.91 7.11 99.48 0.71 -8.20 15 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 20 C -0.21 -9.75 9.83 23.27 0.23 -9.52 15 21 C -0.07 -3.00 6.02 -20.33 -0.12 -3.12 15 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.12 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 26 H 0.12 5.73 6.19 -2.91 -0.02 5.71 15 27 H 0.29 12.37 8.30 -92.71 -0.77 11.60 15 28 H 0.10 4.55 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -52.31 276.19 5.71 -46.60 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.21 Total: 10.50 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.11 Total: -32.32 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.59 Total: -52.55 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.92 Total: -12.79 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.36 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.31 Total: 4.21 kcal Total: -52.31 5.71 -46.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.478 kcal (2) G-P(sol) polarization free energy of solvation -52.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds