Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35793 * 117.00172 * 2 1 4 4 C 1.37241 * 119.48878 * 5.68867 * 3 2 1 5 5 C 1.40834 * 120.11607 * 179.76815 * 4 3 2 6 6 C 1.40607 * 120.14187 * 180.24752 * 5 4 3 7 7 H 1.08004 * 119.99599 * 148.95555 * 6 5 4 8 8 C 1.40203 * 120.00391 * 328.95624 * 6 5 4 9 9 N 1.30686 * 120.00306 * 166.54766 * 8 6 5 10 10 Si 1.86806 * 119.99739 * 346.54746 * 8 6 5 11 11 H 1.48494 * 109.47267 * 93.30485 * 10 8 6 12 12 H 1.48499 * 109.46757 * 213.30831 * 10 8 6 13 13 H 1.48498 * 109.47031 * 333.30600 * 10 8 6 14 14 C 1.41593 * 119.71581 * 0.49703 * 5 4 3 15 15 C 1.43206 * 120.07187 * 179.77171 * 14 5 4 16 16 N 6.72508 * 116.99907 * 359.97438 * 2 1 3 17 17 C 1.42300 * 119.85835 * 359.75368 * 14 5 4 18 18 C 1.45081 * 129.03752 * 180.02562 * 17 14 5 19 19 C 1.32038 * 114.91428 * 180.02562 * 18 17 14 20 20 S 1.75276 * 111.34983 * 359.97438 * 19 18 17 21 21 C 1.39782 * 119.01677 * 0.02562 * 17 14 5 22 22 H 1.09003 * 109.46972 * 295.42078 * 1 2 3 23 23 H 1.09000 * 109.47594 * 55.42678 * 1 2 3 24 24 H 1.09005 * 109.47188 * 175.42344 * 1 2 3 25 25 H 1.08004 * 119.93853 * 0.02562 * 4 3 2 26 26 H 0.97001 * 119.99770 * 180.02562 * 9 8 6 27 27 H 1.07999 * 122.53833 * 359.97438 * 18 17 14 28 28 H 1.07996 * 124.32293 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2931 2.3515 0.1184 5 6 1.9192 3.6130 0.1248 6 6 1.1493 4.7828 0.2514 7 1 1.5633 5.6512 0.7422 8 6 -0.1557 4.8218 -0.2596 9 7 -0.9613 5.7936 0.0790 10 14 -0.7430 3.4848 -1.4245 11 1 -1.4198 2.4146 -0.6487 12 1 -1.6969 4.0652 -2.4035 13 1 0.4207 2.9117 -2.1473 14 6 3.3268 3.6986 -0.0020 15 6 3.9710 4.9776 -0.0013 16 7 4.4820 5.9921 -0.0027 17 6 4.1001 2.5109 -0.1297 18 6 5.5370 2.3666 -0.2695 19 6 5.9640 1.1211 -0.3685 20 16 4.6329 -0.0171 -0.2989 21 6 3.4487 1.2742 -0.1279 22 1 -0.3633 0.4412 0.9282 23 1 -0.3634 0.5831 -0.8461 24 1 -0.3634 -1.0244 -0.0820 25 1 0.2192 2.2822 0.2110 26 1 -1.8643 5.8203 -0.2742 27 1 6.2064 3.2139 -0.2918 28 1 7.0008 0.8398 -0.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396203010.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = 24.896601 kcal Electronic energy + Delta-G solvation = -16386.901777 eV Core-core repulsion = 13687.443386 eV Total energy + Delta-G solvation = -2699.458391 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54815 -37.59739 -35.39329 -34.87577 -33.16982 -30.35290 -29.01429 -27.26954 -25.76587 -22.91346 -21.90107 -20.08381 -18.62607 -17.84838 -17.09229 -16.00634 -15.47000 -15.22282 -14.70094 -14.58367 -13.81214 -13.42095 -13.13529 -12.73535 -12.49975 -12.17872 -12.12017 -11.86879 -11.48066 -11.38316 -11.31032 -11.03587 -10.99990 -10.61242 -10.19236 -9.97876 -9.90502 -9.35179 -8.46433 -7.86478 -7.37089 -6.91423 -4.94492 1.27115 2.00106 2.21629 2.67633 2.72689 2.89736 2.93389 3.03264 3.59959 3.66580 3.79601 3.89826 4.34940 5.07498 5.17334 5.29757 5.35048 5.43413 5.60714 5.75131 5.84635 5.99867 6.09377 6.40995 6.52084 6.61571 6.73302 6.96687 7.22593 7.42467 7.73219 7.91612 8.13819 8.29493 8.76505 9.62298 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.010408 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.614080 B = 2689.656897 C = 3985.818626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.321 6.321 3 C 0.212 3.788 4 C -0.286 4.286 5 C 0.153 3.847 6 C -0.411 4.411 7 H 0.102 0.898 8 C 0.082 3.918 9 N -0.774 5.774 10 Si 0.907 3.093 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.235 1.235 14 C -0.167 4.167 15 C 0.302 3.698 16 N -0.499 5.499 17 C 0.049 3.951 18 C -0.132 4.132 19 C -0.187 4.187 20 S 0.059 5.941 21 C -0.253 4.253 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.125 0.875 26 H 0.295 0.705 27 H 0.135 0.865 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -11.109 -1.717 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.235 6.235 3 C 0.163 3.837 4 C -0.307 4.307 5 C 0.146 3.854 6 C -0.438 4.438 7 H 0.120 0.880 8 C -0.142 4.142 9 N -0.395 5.395 10 Si 0.732 3.268 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.158 1.158 14 C -0.176 4.176 15 C -0.008 4.008 16 N -0.178 5.178 17 C 0.039 3.961 18 C -0.164 4.164 19 C -0.321 4.321 20 S 0.320 5.680 21 C -0.368 4.368 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.142 0.858 26 H 0.106 0.894 27 H 0.153 0.847 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.690 -11.123 -1.774 11.390 hybrid contribution -0.859 0.925 -0.290 1.295 sum 0.831 -10.198 -2.064 10.438 Atomic orbital electron populations 1.23122 0.78906 1.03182 1.01761 1.85954 1.20934 1.28016 1.88547 1.17997 0.88945 0.83703 0.93014 1.20930 0.98961 0.91710 1.19123 1.16961 0.89700 0.92060 0.86664 1.19641 0.95944 0.99211 1.29018 0.88039 1.26372 0.95386 0.96715 0.95734 1.69575 1.07071 1.29428 1.33451 0.86442 0.80089 0.79999 0.80272 1.18827 1.20862 1.15787 1.15517 0.91715 0.83956 1.26446 1.25440 0.91521 0.92351 0.91487 1.81030 1.10955 1.11178 1.14636 1.18596 0.90970 0.91069 0.95461 1.20910 0.93750 0.97226 1.04514 1.25004 1.02501 0.96759 1.07846 1.83611 0.95496 1.08787 1.80076 1.21013 0.93501 0.95692 1.26579 0.92449 0.92933 0.88628 0.85803 0.89424 0.84719 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.80 101.05 0.99 1.36 15 2 O -0.32 -5.82 10.45 -19.09 -0.20 -6.02 15 3 C 0.21 4.34 6.70 -38.88 -0.26 4.08 15 4 C -0.29 -6.11 5.94 -38.96 -0.23 -6.34 15 5 C 0.15 3.58 5.13 -106.74 -0.55 3.03 15 6 C -0.41 -10.24 8.91 -37.95 -0.34 -10.57 15 7 H 0.10 2.76 7.55 -52.48 -0.40 2.36 15 8 C 0.08 1.93 5.46 -17.30 -0.09 1.84 15 9 N -0.77 -18.62 13.92 55.56 0.77 -17.85 15 10 Si 0.91 18.01 23.39 -169.99 -3.98 14.03 15 11 H -0.26 -4.66 6.00 56.52 0.34 -4.32 15 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 13 H -0.24 -4.84 6.71 56.52 0.38 -4.46 15 14 C -0.17 -3.80 5.87 -105.13 -0.62 -4.42 15 15 C 0.30 7.09 13.75 -22.47 -0.31 6.78 15 16 N -0.50 -12.05 18.54 41.84 0.78 -11.27 15 17 C 0.05 1.01 5.99 -105.05 -0.63 0.38 15 18 C -0.13 -2.32 9.95 -38.79 -0.39 -2.71 15 19 C -0.19 -2.86 11.03 28.81 0.32 -2.54 15 20 S 0.06 0.99 23.20 -107.50 -2.49 -1.51 15 21 C -0.25 -5.12 6.45 -37.94 -0.24 -5.36 15 22 H 0.06 0.80 7.64 -51.93 -0.40 0.40 15 23 H 0.05 0.77 5.81 -51.93 -0.30 0.47 15 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.12 2.50 2.74 -52.48 -0.14 2.36 15 26 H 0.29 6.29 8.29 -40.82 -0.34 5.95 15 27 H 0.14 2.21 8.03 -52.49 -0.42 1.79 15 28 H 0.16 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -26.36 260.56 -5.27 -31.63 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.72 Total: 1.54 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.35 Total: -14.48 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 1.55 Total: -29.12 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.20 Total: -6.02 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -3.98 Total: 14.03 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.36 -5.27 -31.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203010.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.526 kcal (2) G-P(sol) polarization free energy of solvation -26.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds