Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35793 * 117.00172 * 2 1 4 4 C 1.37241 * 119.48878 * 5.68867 * 3 2 1 5 5 C 1.40834 * 120.11607 * 179.76815 * 4 3 2 6 6 C 1.40607 * 120.14187 * 180.24752 * 5 4 3 7 7 H 1.08004 * 119.99599 * 148.95555 * 6 5 4 8 8 C 1.40203 * 120.00391 * 328.95624 * 6 5 4 9 9 N 1.30686 * 120.00306 * 166.54766 * 8 6 5 10 10 Si 1.86806 * 119.99739 * 346.54746 * 8 6 5 11 11 H 1.48494 * 109.47267 * 93.30485 * 10 8 6 12 12 H 1.48499 * 109.46757 * 213.30831 * 10 8 6 13 13 H 1.48498 * 109.47031 * 333.30600 * 10 8 6 14 14 C 1.41593 * 119.71581 * 0.49703 * 5 4 3 15 15 C 1.43206 * 120.07187 * 179.77171 * 14 5 4 16 16 N 6.72508 * 116.99907 * 359.97438 * 2 1 3 17 17 C 1.42300 * 119.85835 * 359.75368 * 14 5 4 18 18 C 1.45081 * 129.03752 * 180.02562 * 17 14 5 19 19 C 1.32038 * 114.91428 * 180.02562 * 18 17 14 20 20 S 1.75276 * 111.34983 * 359.97438 * 19 18 17 21 21 C 1.39782 * 119.01677 * 0.02562 * 17 14 5 22 22 H 1.09003 * 109.46972 * 295.42078 * 1 2 3 23 23 H 1.09000 * 109.47594 * 55.42678 * 1 2 3 24 24 H 1.09005 * 109.47188 * 175.42344 * 1 2 3 25 25 H 1.08004 * 119.93853 * 0.02562 * 4 3 2 26 26 H 0.97001 * 119.99770 * 180.02562 * 9 8 6 27 27 H 1.07999 * 122.53833 * 359.97438 * 18 17 14 28 28 H 1.07996 * 124.32293 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2931 2.3515 0.1184 5 6 1.9192 3.6130 0.1248 6 6 1.1493 4.7828 0.2514 7 1 1.5633 5.6512 0.7422 8 6 -0.1557 4.8218 -0.2596 9 7 -0.9613 5.7936 0.0790 10 14 -0.7430 3.4848 -1.4245 11 1 -1.4198 2.4146 -0.6487 12 1 -1.6969 4.0652 -2.4035 13 1 0.4207 2.9117 -2.1473 14 6 3.3268 3.6986 -0.0020 15 6 3.9710 4.9776 -0.0013 16 7 4.4820 5.9921 -0.0027 17 6 4.1001 2.5109 -0.1297 18 6 5.5370 2.3666 -0.2695 19 6 5.9640 1.1211 -0.3685 20 16 4.6329 -0.0171 -0.2989 21 6 3.4487 1.2742 -0.1279 22 1 -0.3633 0.4412 0.9282 23 1 -0.3634 0.5831 -0.8461 24 1 -0.3634 -1.0244 -0.0820 25 1 0.2192 2.2822 0.2110 26 1 -1.8643 5.8203 -0.2742 27 1 6.2064 3.2139 -0.2918 28 1 7.0008 0.8398 -0.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396203010.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = 9.179182 kcal Electronic energy + Delta-G solvation = -16387.583336 eV Core-core repulsion = 13687.443386 eV Total energy + Delta-G solvation = -2700.139950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07505 -39.10392 -37.08263 -36.63159 -34.81755 -31.92885 -30.61581 -28.59834 -27.38615 -24.38681 -23.54354 -21.59926 -20.20651 -19.49686 -18.63343 -17.59283 -16.90722 -16.65725 -16.20632 -16.05627 -15.37612 -14.97141 -14.73762 -14.28136 -14.17445 -13.77545 -13.66033 -13.53439 -13.14142 -12.89858 -12.77083 -12.60557 -12.41661 -12.11033 -11.85094 -11.52514 -11.44920 -10.93639 -9.94877 -9.43404 -9.11184 -8.41956 -6.76338 -0.25460 0.33864 0.82764 1.14082 1.24010 1.34079 1.39759 1.49419 1.96919 2.04497 2.09933 2.31063 2.54789 3.32541 3.54446 3.81752 4.12536 4.23748 4.33718 4.43056 4.56285 4.61150 4.69683 4.90298 4.95222 5.08248 5.14168 5.42951 5.55887 5.76840 5.95199 6.21753 6.46345 6.48187 6.92298 7.94876 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.010408 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.614080 B = 2689.656897 C = 3985.818626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.220 3.780 4 C -0.298 4.298 5 C 0.152 3.848 6 C -0.449 4.449 7 H 0.058 0.942 8 C 0.050 3.950 9 N -0.816 5.816 10 Si 0.952 3.048 11 H -0.225 1.225 12 H -0.272 1.272 13 H -0.247 1.247 14 C -0.196 4.196 15 C 0.308 3.692 16 N -0.525 5.525 17 C 0.042 3.958 18 C -0.162 4.162 19 C -0.155 4.155 20 S 0.109 5.891 21 C -0.274 4.274 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.305 0.695 27 H 0.142 0.858 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -14.990 -2.505 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.170 3.830 4 C -0.319 4.319 5 C 0.145 3.855 6 C -0.477 4.477 7 H 0.076 0.924 8 C -0.170 4.170 9 N -0.439 5.439 10 Si 0.773 3.227 11 H -0.149 1.149 12 H -0.198 1.198 13 H -0.170 1.170 14 C -0.205 4.205 15 C -0.001 4.001 16 N -0.205 5.205 17 C 0.032 3.968 18 C -0.193 4.193 19 C -0.289 4.289 20 S 0.370 5.630 21 C -0.389 4.389 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.156 0.844 25 H 0.152 0.848 26 H 0.116 0.884 27 H 0.160 0.840 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.253 -15.020 -2.542 15.399 hybrid contribution -0.863 1.908 -0.019 2.094 sum 1.391 -13.112 -2.561 13.432 Atomic orbital electron populations 1.23529 0.76719 1.06067 1.01959 1.85963 1.23144 1.26441 1.87844 1.18096 0.89344 0.84250 0.91265 1.20948 0.99674 0.91179 1.20144 1.17082 0.89991 0.92471 0.85953 1.19501 0.97542 0.98785 1.31907 0.92416 1.27084 0.94778 0.98686 0.96440 1.69596 1.07967 1.31202 1.35106 0.85791 0.79615 0.78564 0.78768 1.14859 1.19796 1.17050 1.15762 0.92018 0.84444 1.28317 1.25738 0.91000 0.92504 0.90876 1.80989 1.11975 1.11615 1.15934 1.18908 0.92726 0.90480 0.94708 1.20938 0.92272 0.98780 1.07337 1.25543 1.04356 0.95318 1.03683 1.83489 0.94008 1.06820 1.78636 1.21530 0.94558 0.97341 1.25447 0.91976 0.93054 0.84432 0.84755 0.88358 0.84021 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.80 113.37 1.11 1.39 15 2 O -0.32 -10.54 10.45 -91.23 -0.95 -11.49 15 3 C 0.22 8.55 6.70 22.72 0.15 8.71 15 4 C -0.30 -12.56 5.94 22.67 0.13 -12.43 15 5 C 0.15 7.31 5.13 -21.24 -0.11 7.20 15 6 C -0.45 -23.79 8.91 23.33 0.21 -23.59 15 7 H 0.06 3.44 7.55 -2.91 -0.02 3.42 15 8 C 0.05 2.44 5.46 85.34 0.47 2.91 15 9 N -0.82 -40.96 13.92 21.87 0.30 -40.65 15 10 Si 0.95 36.45 23.39 68.60 1.60 38.06 15 11 H -0.22 -7.16 6.00 99.48 0.60 -6.56 15 12 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 13 H -0.25 -9.87 6.71 99.48 0.67 -9.20 15 14 C -0.20 -9.19 5.87 -20.19 -0.12 -9.31 15 15 C 0.31 15.13 13.75 88.33 1.21 16.35 15 16 N -0.53 -26.55 18.54 19.01 0.35 -26.19 15 17 C 0.04 1.72 5.99 -20.14 -0.12 1.60 15 18 C -0.16 -5.33 9.95 23.10 0.23 -5.10 15 19 C -0.15 -4.03 11.03 66.89 0.74 -3.29 15 20 S 0.11 3.16 23.20 -56.49 -1.31 1.85 15 21 C -0.27 -10.48 6.45 23.33 0.15 -10.33 15 22 H 0.06 1.51 7.64 -2.39 -0.02 1.49 15 23 H 0.05 1.31 5.81 -2.39 -0.01 1.30 15 24 H 0.14 2.26 8.14 -2.38 -0.02 2.24 15 25 H 0.14 5.24 2.74 -2.91 -0.01 5.23 15 26 H 0.31 13.41 8.29 -92.71 -0.77 12.64 15 27 H 0.14 4.44 8.03 -2.91 -0.02 4.42 15 28 H 0.20 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -60.19 260.56 5.13 -55.06 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.07 Total: 9.24 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.06 Total: -25.88 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: 0.66 Total: -66.84 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.95 Total: -11.49 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.60 Total: 38.06 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.31 Total: 1.85 kcal Total: -60.19 5.13 -55.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203010.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.239 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds