Wall clock time and date at job start Mon Mar 30 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35666 * 116.99952 * 2 1 4 4 C 1.37921 * 119.72705 * 355.59052 * 3 2 1 5 5 C 1.39334 * 120.47702 * 180.02562 * 4 3 2 6 6 C 1.43205 * 119.99497 * 179.97438 * 5 4 3 7 7 N 5.82487 * 80.69080 * 357.33633 * 2 1 3 8 8 C 1.47315 * 120.01371 * 359.97438 * 5 4 3 9 9 C 1.44996 * 129.36405 * 180.02562 * 8 5 4 10 10 C 1.32156 * 114.88263 * 179.19943 * 9 8 5 11 11 S 1.75318 * 111.19137 * 0.72994 * 10 9 8 12 12 C 1.39092 * 118.59711 * 359.72877 * 8 5 4 13 13 C 1.41084 * 119.72972 * 175.61266 * 3 2 1 14 14 C 1.40314 * 119.69984 * 359.97438 * 13 3 2 15 15 H 1.08003 * 120.00401 * 322.08449 * 14 13 3 16 16 C 1.40198 * 119.99823 * 142.07570 * 14 13 3 17 17 N 1.30728 * 120.00076 * 333.13206 * 16 14 13 18 18 Si 1.86798 * 119.99560 * 153.13158 * 16 14 13 19 19 H 1.48506 * 109.46787 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47218 * 300.00164 * 18 16 14 21 21 H 1.48495 * 109.47604 * 60.00366 * 18 16 14 22 22 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46616 * 299.99502 * 1 2 3 24 24 H 1.08996 * 109.47911 * 59.99861 * 1 2 3 25 25 H 1.08001 * 119.75966 * 359.97438 * 4 3 2 26 26 H 1.07997 * 122.55776 * 359.97438 * 9 8 5 27 27 H 1.08002 * 124.40365 * 180.15973 * 10 9 8 28 28 H 0.96996 * 120.00170 * 352.98343 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2914 2.3603 -0.0921 5 6 1.9077 3.6099 -0.0940 6 6 1.1153 4.7988 -0.1906 7 7 0.4868 5.7419 -0.2671 8 6 3.3743 3.7083 0.0033 9 6 4.2178 4.8876 0.0200 10 6 5.5117 4.6442 0.1342 11 16 5.8280 2.9216 0.2130 12 6 4.1152 2.5353 0.1016 13 6 3.4509 1.2776 0.0937 14 6 4.2002 0.0949 0.1867 15 1 3.8276 -0.7363 0.7670 16 6 5.4325 -0.0079 -0.4739 17 7 5.6594 0.7013 -1.5484 18 14 6.7503 -1.1582 0.1815 19 1 7.9506 -1.0834 -0.6898 20 1 7.1163 -0.7556 1.5632 21 1 6.2320 -2.5497 0.1923 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 0.2159 2.2928 -0.1640 26 1 3.8182 5.8889 -0.0429 27 1 6.2758 5.4069 0.1650 28 1 4.9434 1.2202 -1.9471 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396203076.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:23 Heat of formation + Delta-G solvation = 9.842748 kcal Electronic energy + Delta-G solvation = -16382.060701 eV Core-core repulsion = 13681.949525 eV Total energy + Delta-G solvation = -2700.111176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67526 -38.69517 -37.33180 -36.49197 -34.61559 -31.92777 -29.58185 -27.95305 -27.54822 -24.04204 -23.83484 -21.18314 -20.41015 -19.90997 -17.64390 -17.21312 -16.65273 -16.38730 -16.36615 -15.65421 -15.12173 -15.04619 -14.69516 -14.31714 -14.04784 -13.84055 -13.72130 -13.31948 -13.04181 -12.69444 -12.57339 -12.42100 -12.20536 -11.94159 -11.51978 -11.44155 -11.03577 -10.72826 -10.21551 -9.44728 -8.94755 -8.32362 -6.48192 -0.25112 0.48605 0.93231 1.42319 1.47779 1.55625 1.61422 1.83008 1.83914 2.08813 2.30404 2.71446 2.84565 3.24947 3.33346 3.81205 4.22823 4.41624 4.43331 4.49439 4.60425 4.76240 4.85978 4.98086 5.09927 5.27117 5.36723 5.56531 5.66604 5.84797 5.92088 6.22171 6.58412 6.71297 6.99250 7.85652 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.010400 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.379213 B = 2691.541182 C = 4057.329085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.328 6.328 3 C -0.002 4.002 4 C -0.093 4.093 5 C -0.154 4.154 6 C 0.300 3.700 7 N -0.507 5.507 8 C -0.022 4.022 9 C -0.150 4.150 10 C -0.197 4.197 11 S 0.110 5.890 12 C -0.222 4.222 13 C 0.102 3.898 14 C -0.489 4.489 15 H 0.087 0.913 16 C 0.005 3.995 17 N -0.753 5.753 18 Si 1.094 2.906 19 H -0.264 1.264 20 H -0.258 1.258 21 H -0.257 1.257 22 H 0.115 0.885 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.193 0.807 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -2.020 2.553 3.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C -0.050 4.050 4 C -0.116 4.116 5 C -0.163 4.163 6 C -0.009 4.009 7 N -0.187 5.187 8 C -0.033 4.033 9 C -0.182 4.182 10 C -0.331 4.331 11 S 0.375 5.625 12 C -0.338 4.338 13 C 0.095 3.905 14 C -0.515 4.515 15 H 0.105 0.895 16 C -0.217 4.217 17 N -0.373 5.373 18 Si 0.910 3.090 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.181 1.181 22 H 0.133 0.867 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.155 0.845 26 H 0.158 0.842 27 H 0.210 0.790 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.061 -2.000 2.263 4.300 hybrid contribution -3.222 1.275 -0.060 3.465 sum -0.161 -0.725 2.203 2.324 Atomic orbital electron populations 1.23159 0.78357 1.04612 1.01122 1.85946 1.21470 1.26586 1.90352 1.18472 0.91573 0.83888 1.11070 1.20607 0.99111 0.90098 1.01742 1.15784 0.88048 0.86657 1.25768 1.25681 0.91917 0.92292 0.91048 1.81091 1.10660 1.11238 1.15705 1.20022 0.91643 0.91976 0.99642 1.20876 0.92892 0.97898 1.06494 1.25715 0.99979 1.01281 1.06136 1.84052 1.03480 0.98017 1.76937 1.22425 0.96967 0.95512 1.18939 1.16587 0.89636 0.91622 0.92682 1.20719 1.03995 1.00514 1.26311 0.89484 1.28283 1.01003 0.99063 0.93352 1.70497 1.37223 1.16202 1.13379 0.83283 0.73431 0.74824 0.77465 1.18838 1.18180 1.18103 0.86714 0.92780 0.92959 0.84533 0.84198 0.78998 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 15 2 O -0.33 -13.44 9.83 -89.83 -0.88 -14.32 15 3 C 0.00 -0.09 6.68 22.89 0.15 0.06 15 4 C -0.09 -3.78 8.68 22.46 0.19 -3.59 15 5 C -0.15 -6.49 5.96 -19.38 -0.12 -6.61 15 6 C 0.30 12.30 15.12 88.33 1.34 13.63 15 7 N -0.51 -21.22 18.54 19.00 0.35 -20.87 15 8 C -0.02 -0.95 6.15 -18.95 -0.12 -1.06 15 9 C -0.15 -5.64 10.06 23.00 0.23 -5.41 15 10 C -0.20 -6.73 11.05 66.82 0.74 -5.99 15 11 S 0.11 4.47 19.98 -56.49 -1.13 3.34 15 12 C -0.22 -10.20 5.34 23.47 0.13 -10.07 15 13 C 0.10 4.90 4.98 -21.08 -0.10 4.79 15 14 C -0.49 -23.34 8.32 23.25 0.19 -23.14 15 15 H 0.09 4.16 7.91 -2.91 -0.02 4.14 15 16 C 0.01 0.22 3.97 85.33 0.34 0.56 15 17 N -0.75 -35.43 11.52 21.87 0.25 -35.18 15 18 Si 1.09 38.11 30.01 68.60 2.06 40.17 15 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 20 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 21 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 22 H 0.11 2.57 8.14 -2.38 -0.02 2.55 15 23 H 0.05 1.41 7.83 -2.38 -0.02 1.39 15 24 H 0.05 1.38 7.44 -2.39 -0.02 1.37 15 25 H 0.14 4.70 6.20 -2.91 -0.02 4.68 15 26 H 0.14 4.76 8.06 -2.91 -0.02 4.73 15 27 H 0.19 4.93 8.06 -2.91 -0.02 4.90 15 28 H 0.29 14.34 7.38 -92.71 -0.68 13.66 15 Total: -1.00 -54.28 268.33 6.03 -48.25 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.29 Total: 13.69 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.09 Total: -35.08 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.60 Total: -56.05 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.88 Total: -14.32 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.06 Total: 40.17 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.13 Total: 3.34 kcal Total: -54.28 6.03 -48.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203076.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.097 kcal (2) G-P(sol) polarization free energy of solvation -54.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds