Wall clock time and date at job start Mon Mar 30 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35744 * 116.99559 * 2 1 4 4 C 1.36065 * 122.41602 * 90.02232 * 3 2 1 5 5 C 1.43201 * 124.75335 * 359.74732 * 4 3 2 6 6 N 3.68071 * 97.61759 * 74.49480 * 2 1 3 7 7 S 1.75433 * 110.48616 * 179.72755 * 4 3 2 8 8 C 1.76026 * 91.78048 * 359.97438 * 7 4 3 9 9 C 1.38989 * 130.08682 * 179.97438 * 8 7 4 10 10 C 1.40352 * 120.03952 * 179.97438 * 9 8 7 11 11 C 1.40870 * 120.18968 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00140 * 150.14886 * 11 10 9 13 13 C 1.39957 * 120.00007 * 330.14003 * 11 10 9 14 14 N 1.30830 * 120.00040 * 161.67784 * 13 11 10 15 15 Si 1.86802 * 120.00047 * 341.68544 * 13 11 10 16 16 H 1.48497 * 109.47104 * 95.40769 * 15 13 11 17 17 H 1.48505 * 109.46809 * 215.40490 * 15 13 11 18 18 H 1.48501 * 109.47167 * 335.40305 * 15 13 11 19 19 C 1.41346 * 119.61925 * 359.97438 * 10 9 8 20 20 C 1.35059 * 120.36891 * 0.02646 * 19 10 9 21 21 C 1.40228 * 122.40332 * 269.73081 * 3 2 1 22 22 H 1.09001 * 109.47549 * 300.00414 * 1 2 3 23 23 H 1.09000 * 109.46809 * 60.01013 * 1 2 3 24 24 H 1.08997 * 109.46917 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.98256 * 359.97438 * 9 8 7 26 26 H 0.96995 * 120.00081 * 180.02562 * 14 13 11 27 27 H 1.07999 * 119.81419 * 180.02562 * 19 10 9 28 28 H 1.08001 * 119.55405 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 2.3767 1.8593 1.1486 5 6 2.1203 1.3663 2.4685 6 7 1.9169 0.9753 3.5155 7 16 3.1626 3.3852 0.7860 8 6 3.0248 3.1073 -0.9467 9 6 3.4334 3.8968 -2.0151 10 6 3.2154 3.4640 -3.3323 11 6 3.6279 4.2619 -4.4175 12 1 3.9163 3.7987 -5.3495 13 6 3.6637 5.6550 -4.2880 14 7 4.3652 6.3723 -5.1278 15 14 2.7103 6.4904 -2.9159 16 1 3.6106 6.7230 -1.7580 17 1 2.1817 7.7906 -3.4009 18 1 1.5807 5.6217 -2.4980 19 6 2.5797 2.2230 -3.5637 20 6 2.1823 1.4554 -2.5260 21 6 2.3912 1.8766 -1.1839 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.9191 4.8438 -1.8316 26 1 4.3903 7.3377 -5.0378 27 1 2.4107 1.8868 -4.5760 28 1 1.6974 0.5097 -2.7179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396203123.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:41 Heat of formation + Delta-G solvation = 11.133699 kcal Electronic energy + Delta-G solvation = -16005.866308 eV Core-core repulsion = 13305.811112 eV Total energy + Delta-G solvation = -2700.055196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97663 -39.16138 -37.59770 -36.15968 -34.62495 -31.96169 -31.18569 -28.26223 -27.56833 -24.20814 -23.80389 -21.96615 -19.90551 -19.63880 -18.23410 -17.58750 -17.26697 -16.70241 -16.03129 -15.69157 -15.39992 -14.87294 -14.76029 -14.64816 -14.44874 -14.12000 -13.82493 -13.71150 -13.13920 -12.93974 -12.76875 -12.34540 -12.25143 -11.98732 -11.73014 -11.38195 -11.16873 -10.93056 -10.34777 -9.42905 -9.12505 -8.58601 -6.61885 -0.63078 0.31371 0.67505 0.89333 0.95848 1.29258 1.39819 1.49266 1.83922 2.05906 2.12773 2.40363 2.82155 3.01382 3.31617 4.01515 4.30079 4.33636 4.44509 4.56702 4.61817 4.69201 4.75058 4.88216 5.05669 5.18442 5.39219 5.64284 5.71357 5.97912 6.12500 6.29669 6.40690 6.47366 6.60305 7.90905 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.007002 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.155093 B = 3997.984393 C = 4637.855066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.339 6.339 3 C 0.228 3.772 4 C -0.257 4.257 5 C 0.316 3.684 6 N -0.462 5.462 7 S 0.127 5.873 8 C -0.052 4.052 9 C -0.253 4.253 10 C 0.104 3.896 11 C -0.424 4.424 12 H 0.086 0.914 13 C 0.056 3.944 14 N -0.804 5.804 15 Si 0.951 3.049 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.246 1.246 19 C -0.183 4.183 20 C -0.022 4.022 21 C -0.237 4.237 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.124 0.876 25 H 0.105 0.895 26 H 0.304 0.696 27 H 0.133 0.867 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -3.643 3.237 7.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.257 6.257 3 C 0.168 3.832 4 C -0.375 4.375 5 C 0.003 3.997 6 N -0.141 5.141 7 S 0.389 5.611 8 C -0.168 4.168 9 C -0.281 4.281 10 C 0.097 3.903 11 C -0.451 4.451 12 H 0.104 0.896 13 C -0.166 4.166 14 N -0.426 5.426 15 Si 0.773 3.227 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.169 1.169 19 C -0.202 4.202 20 C -0.043 4.043 21 C -0.242 4.242 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.448 -3.093 5.681 8.457 hybrid contribution -0.502 -0.132 -1.005 1.131 sum -5.950 -3.225 4.676 8.226 Atomic orbital electron populations 1.23283 0.76118 1.05266 1.01424 1.85859 1.22104 1.23393 1.94300 1.17696 0.92069 0.84238 0.89217 1.19391 1.24527 1.04765 0.88847 1.24191 0.92075 0.92313 0.91092 1.81177 1.12181 1.09665 1.11114 1.83649 1.64411 1.15250 0.97769 1.22346 1.00160 0.97778 0.96499 1.20241 1.14476 1.02325 0.91066 1.17789 0.88021 0.93119 0.91368 1.19777 1.34012 0.91643 0.99703 0.89594 1.26893 0.93471 0.98199 0.98033 1.69669 1.28384 1.10128 1.34442 0.85646 0.80845 0.77934 0.78231 1.18476 1.19754 1.16933 1.20973 1.03597 0.96366 0.99224 1.20596 0.96104 0.98289 0.89282 1.17799 1.15239 0.97104 0.94091 0.93955 0.91884 0.85784 0.87694 0.88435 0.84938 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.13 113.37 1.26 2.01 15 2 O -0.34 -10.55 10.13 -90.68 -0.92 -11.47 15 3 C 0.23 7.95 5.80 22.25 0.13 8.08 15 4 C -0.26 -8.99 6.25 23.01 0.14 -8.85 15 5 C 0.32 11.13 15.53 88.33 1.37 12.50 15 6 N -0.46 -16.87 18.54 19.00 0.35 -16.52 15 7 S 0.13 4.42 23.22 -56.49 -1.31 3.10 15 8 C -0.05 -2.04 6.44 22.99 0.15 -1.89 15 9 C -0.25 -10.78 7.20 22.96 0.17 -10.62 15 10 C 0.10 4.47 5.10 -21.36 -0.11 4.36 15 11 C -0.42 -19.62 9.54 23.33 0.22 -19.40 15 12 H 0.09 4.15 8.06 -2.91 -0.02 4.13 15 13 C 0.06 2.52 5.40 85.26 0.46 2.98 15 14 N -0.80 -37.28 13.93 21.83 0.30 -36.98 15 15 Si 0.95 36.99 24.52 68.60 1.68 38.67 15 16 H -0.26 -9.86 6.71 99.48 0.67 -9.19 15 17 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 18 H -0.25 -9.84 6.87 99.48 0.68 -9.16 15 19 C -0.18 -6.83 9.68 22.30 0.22 -6.61 15 20 C -0.02 -0.77 9.90 22.52 0.22 -0.55 15 21 C -0.24 -8.83 5.88 -21.28 -0.13 -8.95 15 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 15 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.11 4.49 4.72 -2.91 -0.01 4.48 15 26 H 0.30 12.58 8.30 -92.71 -0.77 11.81 15 27 H 0.13 4.39 8.06 -2.91 -0.02 4.37 15 28 H 0.14 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -50.11 270.48 5.36 -44.75 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.15 Total: 5.38 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.11 Total: -26.94 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.66 Total: -53.49 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.92 Total: -11.47 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.68 Total: 38.67 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.31 Total: 3.10 kcal Total: -50.11 5.36 -44.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203123.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.885 kcal (2) G-P(sol) polarization free energy of solvation -50.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds