Wall clock time and date at job start Mon Mar 30 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36157 * 116.99818 * 2 1 4 4 C 1.32232 * 122.57439 * 0.02602 * 3 2 1 5 5 S 1.75272 * 111.31589 * 179.97438 * 4 3 2 6 6 C 1.75910 * 92.20710 * 0.02562 * 5 4 3 7 7 C 1.39500 * 109.90258 * 359.97438 * 6 5 4 8 8 C 1.41522 * 119.67246 * 179.97438 * 7 6 5 9 9 C 1.37019 * 121.89634 * 359.97227 * 8 7 6 10 10 C 1.39770 * 120.58272 * 359.76202 * 9 8 7 11 11 C 1.43197 * 120.55806 * 180.27833 * 10 9 8 12 12 N 7.75640 * 161.17039 * 359.56049 * 2 1 3 13 13 C 1.42216 * 130.24246 * 179.97438 * 6 5 4 14 14 C 1.40252 * 120.44866 * 0.02562 * 13 6 5 15 15 H 1.08002 * 119.99975 * 143.05442 * 14 13 6 16 16 C 1.40258 * 119.99836 * 323.06329 * 14 13 6 17 17 N 1.30669 * 120.00161 * 333.36782 * 16 14 13 18 18 Si 1.86798 * 120.00137 * 153.37400 * 16 14 13 19 19 H 1.48495 * 109.47411 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47263 * 299.99801 * 18 16 14 21 21 H 1.48506 * 109.47223 * 59.99426 * 18 16 14 22 22 H 1.09000 * 109.47448 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47188 * 299.99935 * 1 2 3 24 24 H 1.09010 * 109.47214 * 59.99703 * 1 2 3 25 25 H 1.08000 * 124.34101 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.05121 * 180.02562 * 8 7 6 27 27 H 1.07994 * 119.71424 * 180.02562 * 9 8 7 28 28 H 0.97005 * 119.99831 * 353.08706 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2132 0.0000 4 6 1.3774 2.3534 0.0005 5 16 2.4627 3.7297 0.0011 6 6 3.8849 2.6945 -0.0002 7 6 3.4970 1.3545 -0.0004 8 6 4.4833 0.3396 -0.0019 9 6 5.8221 0.6311 -0.0038 10 6 6.2609 1.9581 -0.0092 11 6 7.6602 2.2622 -0.0171 12 7 8.7703 2.5033 -0.0192 13 6 5.2666 3.0315 -0.0009 14 6 5.6706 4.3746 -0.0002 15 1 6.5424 4.6760 0.5616 16 6 4.9423 5.3264 -0.7288 17 7 4.2549 4.9600 -1.7780 18 14 4.9550 7.1177 -0.1996 19 1 4.1139 7.9144 -1.1286 20 1 4.4140 7.2305 1.1788 21 1 6.3476 7.6326 -0.2284 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.2999 2.4271 0.0006 26 1 4.1717 -0.6945 -0.0025 27 1 6.5447 -0.1714 -0.0053 28 1 4.3272 4.0523 -2.1125 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396203560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:30 Heat of formation + Delta-G solvation = 3.580497 kcal Electronic energy + Delta-G solvation = -16233.613092 eV Core-core repulsion = 13533.230365 eV Total energy + Delta-G solvation = -2700.382727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67896 -39.23838 -37.13086 -36.24198 -34.44171 -31.66481 -30.07450 -28.46634 -27.31107 -24.53557 -23.34126 -21.51253 -20.47019 -19.23740 -17.98821 -17.63164 -16.60586 -16.58434 -16.14342 -15.75940 -15.38634 -14.82500 -14.67938 -14.30589 -14.00908 -13.72196 -13.66617 -13.39505 -13.03525 -12.65452 -12.54369 -12.25937 -12.17084 -12.01678 -11.76997 -11.47573 -11.28637 -10.77823 -10.01545 -9.52584 -9.28236 -8.11921 -6.72642 -0.28913 0.73546 0.91384 1.22384 1.42665 1.49206 1.60940 1.76889 1.99827 2.23002 2.27066 2.44239 2.58147 3.29628 3.49803 3.78950 4.30302 4.35622 4.43535 4.51530 4.63407 4.72393 4.78275 4.88840 5.10638 5.25151 5.46413 5.55885 5.69001 5.78137 6.03379 6.38793 6.43732 6.49811 6.87694 7.77524 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.010046 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.978464 B = 2786.634794 C = 4199.675046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.318 4.318 5 S 0.117 5.883 6 C -0.218 4.218 7 C -0.029 4.029 8 C -0.200 4.200 9 C -0.015 4.015 10 C -0.198 4.198 11 C 0.308 3.692 12 N -0.522 5.522 13 C 0.143 3.857 14 C -0.514 4.514 15 H 0.077 0.923 16 C 0.009 3.991 17 N -0.746 5.746 18 Si 1.091 2.909 19 H -0.257 1.257 20 H -0.254 1.254 21 H -0.265 1.265 22 H 0.124 0.876 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.187 0.813 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -3.550 2.081 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C 0.046 3.954 4 C -0.452 4.452 5 S 0.381 5.619 6 C -0.334 4.334 7 C -0.039 4.039 8 C -0.222 4.222 9 C -0.037 4.037 10 C -0.207 4.207 11 C -0.001 4.001 12 N -0.201 5.201 13 C 0.135 3.865 14 C -0.540 4.540 15 H 0.095 0.905 16 C -0.214 4.214 17 N -0.365 5.365 18 Si 0.908 3.092 19 H -0.181 1.181 20 H -0.178 1.178 21 H -0.190 1.190 22 H 0.142 0.858 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.204 0.796 26 H 0.149 0.851 27 H 0.156 0.844 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.982 -0.375 1.673 10.128 hybrid contribution 0.432 -3.044 0.236 3.083 sum -9.550 -3.418 1.910 10.321 Atomic orbital electron populations 1.23326 0.76506 1.05561 1.01962 1.86012 1.23084 1.25276 1.89212 1.18674 0.90305 0.85156 1.01314 1.25272 1.05069 0.96633 1.18272 1.84039 0.92972 1.06187 1.78720 1.22612 0.97225 0.95496 1.18086 1.18738 0.90421 0.93197 1.01529 1.20221 0.90740 0.97574 1.13651 1.20572 0.95542 0.93487 0.94144 1.16902 0.83391 0.94018 1.26374 1.25708 0.92444 0.91122 0.90860 1.81012 1.13355 1.09901 1.15881 1.17903 0.87807 0.92357 0.88470 1.20693 1.13135 0.93131 1.27078 0.90544 1.28230 0.90239 1.10508 0.92459 1.70472 1.27934 1.22879 1.15249 0.83309 0.78881 0.68710 0.78329 1.18106 1.17839 1.18980 0.85780 0.92009 0.92236 0.79583 0.85070 0.84432 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.92 113.37 1.12 1.54 15 2 O -0.32 -10.12 10.55 -95.34 -1.01 -11.13 15 3 C 0.10 3.78 6.85 23.15 0.16 3.94 15 4 C -0.32 -10.97 9.94 66.78 0.66 -10.30 15 5 S 0.12 4.80 19.87 -56.49 -1.12 3.68 15 6 C -0.22 -10.00 5.34 23.56 0.13 -9.87 15 7 C -0.03 -1.22 6.03 -20.24 -0.12 -1.34 15 8 C -0.20 -7.83 9.98 22.79 0.23 -7.60 15 9 C -0.02 -0.60 9.70 22.35 0.22 -0.38 15 10 C -0.20 -9.06 5.95 -19.56 -0.12 -9.18 15 11 C 0.31 14.51 14.45 88.33 1.28 15.79 15 12 N -0.52 -25.25 18.54 19.00 0.35 -24.90 15 13 C 0.14 6.99 5.16 -19.70 -0.10 6.88 15 14 C -0.51 -25.48 8.21 23.25 0.19 -25.29 15 15 H 0.08 3.91 7.74 -2.91 -0.02 3.88 15 16 C 0.01 0.42 4.04 85.36 0.34 0.76 15 17 N -0.75 -35.54 11.42 21.88 0.25 -35.29 15 18 Si 1.09 39.87 30.01 68.60 2.06 41.93 15 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 20 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 21 H -0.27 -9.37 7.11 99.48 0.71 -8.66 15 22 H 0.12 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.06 1.11 7.83 -2.39 -0.02 1.09 15 24 H 0.06 1.10 7.83 -2.38 -0.02 1.09 15 25 H 0.19 4.98 6.90 -2.91 -0.02 4.96 15 26 H 0.13 4.45 8.06 -2.91 -0.02 4.43 15 27 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 28 H 0.29 14.54 7.28 -92.70 -0.68 13.86 15 Total: -1.00 -56.04 269.13 5.82 -50.22 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.30 Total: 10.54 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.99 Total: -35.05 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.60 Total: -60.19 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.01 Total: -11.13 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.06 Total: 41.93 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.12 Total: 3.68 kcal Total: -56.04 5.82 -50.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.798 kcal (2) G-P(sol) polarization free energy of solvation -56.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds