Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35790 * 117.00661 * 2 1 4 4 C 1.35622 * 119.61542 * 359.97438 * 3 2 1 5 5 C 1.41174 * 120.34545 * 179.97438 * 4 3 2 6 6 C 1.40877 * 120.15024 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99799 * 24.83045 * 6 5 4 8 8 C 1.39964 * 120.00345 * 204.83508 * 6 5 4 9 9 N 1.30820 * 120.00218 * 18.00473 * 8 6 5 10 10 Si 1.86808 * 120.00303 * 198.01032 * 8 6 5 11 11 H 1.48496 * 109.46889 * 59.99745 * 10 8 6 12 12 H 1.48501 * 109.46914 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46767 * 299.99471 * 10 8 6 14 14 C 1.40460 * 119.69883 * 0.02562 * 5 4 3 15 15 C 1.38948 * 120.14173 * 0.02562 * 14 5 4 16 16 S 1.76052 * 130.17725 * 180.02562 * 15 14 5 17 17 C 1.75464 * 91.65651 * 179.97438 * 16 15 14 18 18 C 1.43191 * 124.75426 * 179.97438 * 17 16 15 19 19 N 6.32739 * 170.38126 * 180.02562 * 2 1 3 20 20 C 1.35435 * 110.49476 * 359.97438 * 17 16 15 21 21 C 1.39648 * 115.43386 * 359.75563 * 20 17 16 22 22 H 1.09008 * 109.47279 * 59.99709 * 1 2 3 23 23 H 1.08999 * 109.47723 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47089 * 300.00207 * 1 2 3 25 25 H 1.07999 * 119.82807 * 359.95820 * 4 3 2 26 26 H 0.96994 * 120.00544 * 180.02562 * 9 8 6 27 27 H 1.08000 * 119.92563 * 180.02562 * 14 5 4 28 28 H 1.07997 * 122.28460 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2994 2.3423 -0.0005 5 6 1.9244 3.6082 0.0000 6 6 1.1453 4.7820 -0.0011 7 1 0.1390 4.7625 0.3905 8 6 1.6754 5.9733 -0.5097 9 7 2.7246 5.9417 -1.2905 10 14 0.8848 7.6087 -0.0736 11 1 0.9217 7.7993 1.3986 12 1 1.6301 8.7105 -0.7339 13 1 -0.5255 7.6163 -0.5386 14 6 3.3265 3.6921 0.0005 15 6 4.0947 2.5342 0.0000 16 16 5.8435 2.3315 0.0011 17 6 5.6919 0.5834 0.0001 18 6 6.7934 -0.3315 -0.0001 19 7 7.6674 -1.0573 -0.0005 20 6 4.3870 0.2206 -0.0004 21 6 3.4714 1.2750 0.0054 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2215 2.2755 -0.0016 26 1 3.0921 6.7673 -1.6427 27 1 3.8084 4.6586 0.0014 28 1 4.0759 -0.8135 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396203774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = 18.998531 kcal Electronic energy + Delta-G solvation = -15849.910656 eV Core-core repulsion = 13150.196505 eV Total energy + Delta-G solvation = -2699.714151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41484 -37.13503 -36.20396 -35.02201 -32.94979 -29.48604 -29.06555 -27.09630 -25.83709 -22.92755 -21.70856 -20.32241 -18.55807 -17.68637 -16.07159 -15.72668 -15.22675 -15.19065 -15.14934 -14.41156 -13.59217 -13.46012 -13.31012 -12.65704 -12.47786 -12.33931 -12.10748 -11.83441 -11.59837 -11.41198 -11.10113 -10.89989 -10.86338 -10.39830 -10.28140 -9.97780 -9.81799 -9.25200 -8.34511 -7.64824 -7.28542 -6.66273 -4.79037 1.28291 2.16025 2.53732 2.70018 2.79173 2.82772 2.84684 3.06664 3.55914 3.59775 3.89278 3.92335 4.22652 4.68963 5.15599 5.45877 5.53986 5.72903 5.85837 5.94691 6.31987 6.43392 6.52434 6.57315 6.69712 6.89024 7.10620 7.39504 7.41863 7.67615 7.88415 8.06763 8.10663 8.30437 8.45053 9.61446 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.006894 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.073415 B = 4060.378292 C = 5307.495353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.201 3.799 4 C -0.292 4.292 5 C 0.156 3.844 6 C -0.413 4.413 7 H 0.091 0.909 8 C 0.069 3.931 9 N -0.750 5.750 10 Si 0.919 3.081 11 H -0.257 1.257 12 H -0.273 1.273 13 H -0.260 1.260 14 C -0.179 4.179 15 C -0.039 4.039 16 S 0.068 5.932 17 C -0.242 4.242 18 C 0.308 3.692 19 N -0.467 5.467 20 C 0.033 3.967 21 C -0.237 4.237 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.114 0.886 26 H 0.294 0.706 27 H 0.127 0.873 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -0.250 1.403 5.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.240 6.240 3 C 0.154 3.846 4 C -0.312 4.312 5 C 0.149 3.851 6 C -0.440 4.440 7 H 0.109 0.891 8 C -0.155 4.155 9 N -0.372 5.372 10 Si 0.741 3.259 11 H -0.182 1.182 12 H -0.197 1.197 13 H -0.185 1.185 14 C -0.208 4.208 15 C -0.155 4.155 16 S 0.329 5.671 17 C -0.360 4.360 18 C -0.005 4.005 19 N -0.146 5.146 20 C -0.001 4.001 21 C -0.241 4.241 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.389 -0.560 1.238 2.748 hybrid contribution -2.089 0.247 0.006 2.103 sum -4.478 -0.313 1.244 4.658 Atomic orbital electron populations 1.22914 0.79373 1.02598 1.01451 1.85921 1.20624 1.28784 1.88662 1.18380 0.89675 0.83350 0.93185 1.20693 0.98577 0.92222 1.19725 1.17234 0.91368 0.91345 0.85201 1.19822 1.00795 0.92479 1.30948 0.89063 1.26177 0.94507 1.02229 0.92583 1.69802 1.17460 1.31672 1.18238 0.86157 0.80194 0.79020 0.80490 1.18161 1.19725 1.18453 1.20568 0.92764 0.95128 1.12307 1.22228 0.94575 0.96419 1.02292 1.83665 1.03392 0.97441 1.82609 1.18863 0.91101 0.94872 1.31128 1.24570 0.92008 0.92215 0.91698 1.81160 1.09985 1.09721 1.13756 1.20055 0.89663 0.99161 0.91191 1.16712 0.89981 0.91926 1.25504 0.92839 0.89290 0.92901 0.86845 0.89490 0.85487 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.79 101.05 0.99 1.42 15 2 O -0.33 -5.88 10.34 -19.08 -0.20 -6.08 15 3 C 0.20 4.16 6.72 -38.78 -0.26 3.89 15 4 C -0.29 -6.10 8.67 -39.40 -0.34 -6.45 15 5 C 0.16 3.56 5.56 -106.95 -0.59 2.97 15 6 C -0.41 -9.06 9.02 -37.94 -0.34 -9.41 15 7 H 0.09 1.85 7.91 -52.49 -0.42 1.44 15 8 C 0.07 1.45 5.12 -17.34 -0.09 1.36 15 9 N -0.75 -16.51 10.97 55.55 0.61 -15.90 15 10 Si 0.92 15.51 29.60 -169.99 -5.03 10.48 15 11 H -0.26 -4.36 7.11 56.52 0.40 -3.95 15 12 H -0.27 -4.54 7.11 56.52 0.40 -4.14 15 13 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 14 C -0.18 -4.17 8.71 -38.48 -0.34 -4.50 15 15 C -0.04 -0.87 6.45 -38.46 -0.25 -1.11 15 16 S 0.07 1.35 23.23 -107.50 -2.50 -1.15 15 17 C -0.24 -4.74 6.23 -38.66 -0.24 -4.98 15 18 C 0.31 5.99 15.77 -22.48 -0.35 5.64 15 19 N -0.47 -9.41 18.54 41.84 0.78 -8.64 15 20 C 0.03 0.65 9.88 -40.06 -0.40 0.25 15 21 C -0.24 -5.07 5.88 -106.78 -0.63 -5.70 15 22 H 0.05 0.69 7.62 -51.92 -0.40 0.30 15 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.05 0.67 7.62 -51.93 -0.40 0.27 15 25 H 0.11 2.11 6.13 -52.49 -0.32 1.79 15 26 H 0.29 5.82 8.30 -40.82 -0.34 5.48 15 27 H 0.13 3.03 6.15 -52.49 -0.32 2.70 15 28 H 0.13 2.28 8.06 -52.49 -0.42 1.86 15 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -24.60 271.74 -6.92 -31.52 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -1.83 Total: 2.29 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.84 Total: -16.62 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 1.38 Total: -24.54 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.20 Total: -6.08 kcal Atomic # 14 Polarization: 15.51 SS G_CDS: -5.03 Total: 10.48 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.50 Total: -1.15 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -24.60 -6.92 -31.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396203774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.520 kcal (2) G-P(sol) polarization free energy of solvation -24.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds