Wall clock time and date at job start Mon Mar 30 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35614 * 117.00096 * 2 1 4 4 C 1.37882 * 122.60045 * 269.97957 * 3 2 1 5 5 C 1.39445 * 124.85726 * 0.02562 * 4 3 2 6 6 H 1.08005 * 119.99797 * 353.46592 * 5 4 3 7 7 C 1.40222 * 120.00155 * 173.47097 * 5 4 3 8 8 N 1.30780 * 120.00059 * 6.76618 * 7 5 4 9 9 Si 1.86802 * 120.00175 * 186.76426 * 7 5 4 10 10 H 1.48499 * 109.47210 * 94.98411 * 9 7 5 11 11 H 1.48503 * 109.47234 * 214.98707 * 9 7 5 12 12 H 1.48497 * 109.46927 * 334.98478 * 9 7 5 13 13 S 1.75436 * 110.28312 * 179.55110 * 4 3 2 14 14 C 1.75998 * 91.89250 * 0.44338 * 13 4 3 15 15 C 1.39201 * 129.96507 * 179.45054 * 14 13 4 16 16 C 1.39299 * 120.19472 * 180.02562 * 15 14 13 17 17 C 1.43200 * 120.07276 * 179.97438 * 16 15 14 18 18 N 7.66764 * 109.30317 * 47.06382 * 2 1 3 19 19 C 1.40371 * 119.85317 * 359.97438 * 16 15 14 20 20 C 1.35541 * 120.42938 * 359.97438 * 19 16 15 21 21 C 1.40118 * 122.60647 * 90.00331 * 3 2 1 22 22 H 1.09000 * 109.47359 * 300.00116 * 1 2 3 23 23 H 1.09004 * 109.47157 * 60.00040 * 1 2 3 24 24 H 1.09003 * 109.47428 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00327 * 180.02562 * 8 7 5 26 26 H 1.08000 * 119.89854 * 359.97438 * 15 14 13 27 27 H 1.07996 * 119.78293 * 179.97438 * 19 16 15 28 28 H 1.07996 * 119.63289 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 2.3823 1.8700 -1.1616 5 6 2.1395 1.3937 -2.4495 6 1 1.7503 0.3964 -2.5920 7 6 2.4008 2.2096 -3.5596 8 7 2.9942 3.3638 -3.3977 9 14 1.9013 1.6480 -5.2698 10 1 0.5727 2.2176 -5.6095 11 1 2.9073 2.1146 -6.2575 12 1 1.8271 0.1652 -5.3017 13 16 3.1488 3.4031 -0.7874 14 6 3.0112 3.1158 0.9436 15 6 3.4196 3.9039 2.0159 16 6 3.2068 3.4727 3.3233 17 6 3.6284 4.2852 4.4245 18 7 3.9636 4.9294 5.2980 19 6 2.5780 2.2399 3.5588 20 6 2.1756 1.4654 2.5219 21 6 2.3875 1.8810 1.1803 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1746 3.9283 -4.1656 26 1 3.9036 4.8520 1.8337 27 1 2.4140 1.9066 4.5729 28 1 1.6927 0.5195 2.7179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396204318.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:33 Heat of formation + Delta-G solvation = 4.120214 kcal Electronic energy + Delta-G solvation = -15931.989334 eV Core-core repulsion = 13231.630011 eV Total energy + Delta-G solvation = -2700.359323 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83738 -37.20219 -35.65934 -34.83270 -32.66416 -30.19101 -29.51170 -26.72322 -25.41018 -22.93978 -21.82298 -19.71661 -18.49439 -17.92171 -16.13128 -15.98623 -15.20866 -14.49787 -14.44202 -13.93265 -13.49219 -13.33615 -13.29299 -12.83050 -12.61234 -12.19945 -12.15630 -11.90311 -11.75509 -11.48610 -11.11546 -10.87455 -10.75722 -10.45772 -10.21203 -9.52879 -9.39745 -8.76431 -8.65800 -7.69673 -7.52519 -6.59961 -4.94004 1.43704 2.20576 2.49086 2.68224 2.76443 2.91089 3.00635 3.28587 3.35067 3.53299 3.73754 4.36827 4.68101 4.72005 5.30662 5.60016 5.65955 6.08021 6.13437 6.21329 6.30098 6.33002 6.34942 6.58317 6.74600 6.90809 7.11744 7.18525 7.33382 7.52532 7.67403 7.78611 8.05454 8.14272 8.85040 9.27974 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.006529 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.869751 B = 4287.557214 C = 5159.760327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.299 6.299 3 C -0.161 4.161 4 C 0.034 3.966 5 C -0.339 4.339 6 H 0.110 0.890 7 C 0.048 3.952 8 N -0.753 5.753 9 Si 0.943 3.057 10 H -0.261 1.261 11 H -0.267 1.267 12 H -0.252 1.252 13 S 0.163 5.837 14 C -0.274 4.274 15 C 0.013 3.987 16 C -0.135 4.135 17 C 0.283 3.717 18 N -0.479 5.479 19 C -0.059 4.059 20 C -0.147 4.147 21 C 0.033 3.967 22 H 0.027 0.973 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.308 0.692 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 -1.986 -3.001 4.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C -0.210 4.210 4 C -0.087 4.087 5 C -0.373 4.373 6 H 0.127 0.873 7 C -0.177 4.177 8 N -0.377 5.377 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.192 1.192 12 H -0.175 1.175 13 S 0.423 5.577 14 C -0.388 4.388 15 C -0.012 4.012 16 C -0.141 4.141 17 C -0.029 4.029 18 N -0.157 5.157 19 C -0.081 4.081 20 C -0.167 4.167 21 C 0.024 3.976 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.549 0.183 -2.614 3.044 hybrid contribution -1.159 -1.348 -0.156 1.785 sum -2.709 -1.164 -2.770 4.045 Atomic orbital electron populations 1.22913 0.84731 1.00294 0.99340 1.86103 1.16577 1.24986 1.93812 1.17072 1.19372 0.95262 0.89303 1.21811 0.95436 0.95249 0.96173 1.19479 1.28215 1.01093 0.88469 0.87260 1.26536 0.92980 0.94023 1.04168 1.68657 1.25089 1.08441 1.35561 0.85651 0.79605 0.80933 0.77372 1.18506 1.19175 1.17505 1.84922 1.63650 1.19245 0.89868 1.23124 1.13543 1.00057 1.02049 1.20143 0.94740 0.96898 0.89392 1.15416 1.14388 0.96692 0.87597 1.25923 0.91915 0.92377 0.92673 1.81127 1.12664 1.10840 1.11019 1.20151 0.97167 0.92587 0.98217 1.20331 1.05361 1.00213 0.90797 1.18185 0.94071 0.92030 0.93291 0.95383 0.94718 0.91278 0.87841 0.86932 0.87095 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.13 101.05 1.12 1.54 15 2 O -0.30 -6.61 10.07 -18.54 -0.19 -6.80 15 3 C -0.16 -3.74 5.86 -39.01 -0.23 -3.97 15 4 C 0.03 0.80 6.12 -39.26 -0.24 0.56 15 5 C -0.34 -7.53 9.07 -38.39 -0.35 -7.88 15 6 H 0.11 2.36 7.74 -52.48 -0.41 1.96 15 7 C 0.05 0.96 5.49 -17.25 -0.09 0.86 15 8 N -0.75 -15.47 10.61 55.56 0.59 -14.88 15 9 Si 0.94 14.99 29.57 -169.99 -5.03 9.96 15 10 H -0.26 -4.11 7.11 56.52 0.40 -3.71 15 11 H -0.27 -4.14 7.11 56.52 0.40 -3.74 15 12 H -0.25 -4.01 7.11 56.52 0.40 -3.61 15 13 S 0.16 3.57 20.14 -107.50 -2.16 1.41 15 14 C -0.27 -5.88 6.44 -38.43 -0.25 -6.13 15 15 C 0.01 0.26 9.77 -38.83 -0.38 -0.12 15 16 C -0.13 -2.50 5.74 -106.77 -0.61 -3.11 15 17 C 0.28 5.25 15.33 -22.47 -0.34 4.90 15 18 N -0.48 -9.37 18.54 41.84 0.78 -8.59 15 19 C -0.06 -1.05 9.66 -39.74 -0.38 -1.44 15 20 C -0.15 -2.88 9.92 -39.09 -0.39 -3.27 15 21 C 0.03 0.73 5.86 -106.94 -0.63 0.10 15 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 15 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.31 5.57 8.30 -40.82 -0.34 5.23 15 26 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 27 H 0.11 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.11 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -24.55 275.26 -6.71 -31.26 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.08 Total: 1.44 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.77 Total: -17.96 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 1.37 Total: -23.47 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.19 Total: -6.80 kcal Atomic # 14 Polarization: 14.99 SS G_CDS: -5.03 Total: 9.96 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.16 Total: 1.41 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.55 -6.71 -31.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396204318.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.380 kcal (2) G-P(sol) polarization free energy of solvation -24.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds