Wall clock time and date at job start Mon Mar 30 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35713 * 117.00184 * 2 1 4 4 C 1.32338 * 124.28867 * 179.72465 * 3 2 1 5 5 C 1.45613 * 114.78282 * 179.86853 * 4 3 2 6 6 C 1.40472 * 128.98172 * 180.19032 * 5 4 3 7 7 C 1.40021 * 120.47553 * 180.24649 * 6 5 4 8 8 C 1.41342 * 119.96539 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99790 * 24.76365 * 8 7 6 10 10 C 1.39834 * 120.00284 * 204.77059 * 8 7 6 11 11 N 1.30909 * 119.99558 * 18.01538 * 10 8 7 12 12 Si 1.86796 * 120.00253 * 198.01616 * 10 8 7 13 13 H 1.48502 * 109.46930 * 94.68517 * 12 10 8 14 14 H 1.48497 * 109.47358 * 214.68370 * 12 10 8 15 15 H 1.48500 * 109.46866 * 334.68675 * 12 10 8 16 16 C 1.40786 * 120.07068 * 359.97438 * 7 6 5 17 17 C 1.38355 * 119.78785 * 0.02562 * 16 7 6 18 18 C 1.43202 * 119.82293 * 179.97438 * 17 16 7 19 19 N 6.68598 * 85.83189 * 0.02562 * 2 1 3 20 20 C 1.40085 * 111.78344 * 0.39978 * 5 4 3 21 21 S 1.75255 * 124.27966 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47149 * 60.00305 * 1 2 3 23 23 H 1.08996 * 109.47441 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47025 * 299.99956 * 1 2 3 25 25 H 1.08004 * 122.60490 * 0.04044 * 4 3 2 26 26 H 1.07999 * 119.76126 * 0.25180 * 6 5 4 27 27 H 0.97002 * 119.99453 * 180.02562 * 11 10 8 28 28 H 1.07997 * 120.10744 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.3578 1.3770 0.0053 5 6 3.7956 2.7658 0.0011 6 6 5.1027 3.2803 0.0011 7 6 5.3215 4.6633 0.0018 8 6 6.6413 5.1693 0.0013 9 1 7.4493 4.5697 -0.3913 10 6 6.9009 6.4459 0.5093 11 7 6.0282 7.0288 1.2920 12 14 8.4927 7.3196 0.0712 13 1 8.2639 8.2098 -1.0952 14 1 8.9482 8.1291 1.2298 15 1 9.5314 6.3145 -0.2694 16 6 4.2283 5.5505 0.0020 17 6 2.9380 5.0512 0.0019 18 6 1.8255 5.9529 0.0026 19 7 0.9430 6.6683 0.0030 20 6 2.7112 3.6527 0.0012 21 16 1.2030 2.7462 0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0504 0.5484 0.0094 26 1 5.9449 2.6043 0.0005 27 1 6.2082 7.9146 1.6441 28 1 4.3964 6.6173 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396204857.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:50 Heat of formation + Delta-G solvation = 12.657512 kcal Electronic energy + Delta-G solvation = -15714.477946 eV Core-core repulsion = 13014.488827 eV Total energy + Delta-G solvation = -2699.989118 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30441 -39.67776 -37.56752 -36.41774 -34.40051 -32.19166 -30.09072 -27.86029 -27.26581 -24.53037 -23.86980 -21.87330 -20.21104 -18.86867 -18.16921 -17.37398 -17.00092 -16.82196 -16.56880 -15.55214 -15.15061 -15.06235 -14.91067 -14.30143 -14.02079 -13.82152 -13.65986 -13.37843 -13.08474 -12.87487 -12.73910 -12.50012 -12.40378 -11.93310 -11.81678 -11.41698 -11.35799 -10.78137 -10.20925 -9.04931 -8.80344 -8.53110 -6.38320 -0.00754 0.26875 0.40609 0.98001 1.27245 1.46798 1.58383 1.59580 1.63193 2.15328 2.21242 2.25940 2.67698 3.02357 3.54106 4.23407 4.28061 4.29656 4.48800 4.60003 4.69509 4.81697 4.92407 5.10295 5.24902 5.27708 5.43271 5.65122 5.85931 5.97836 6.09366 6.35400 6.49433 6.75383 6.81741 8.23361 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.005922 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.515549 B = 4727.002486 C = 5565.747248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.293 6.293 3 C 0.044 3.956 4 C -0.185 4.185 5 C -0.013 4.013 6 C -0.191 4.191 7 C 0.090 3.910 8 C -0.470 4.470 9 H 0.096 0.904 10 C 0.038 3.962 11 N -0.819 5.819 12 Si 0.983 3.017 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.252 1.252 16 C -0.083 4.083 17 C 0.000 4.000 18 C 0.280 3.720 19 N -0.465 5.465 20 C -0.225 4.225 21 S 0.028 5.972 22 H 0.062 0.938 23 H 0.139 0.861 24 H 0.061 0.939 25 H 0.161 0.839 26 H 0.122 0.878 27 H 0.293 0.707 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -8.438 -1.903 9.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.207 6.207 3 C -0.115 4.115 4 C -0.216 4.216 5 C -0.019 4.019 6 C -0.214 4.214 7 C 0.086 3.914 8 C -0.499 4.499 9 H 0.114 0.886 10 C -0.179 4.179 11 N -0.444 5.444 12 Si 0.804 3.196 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.175 1.175 16 C -0.106 4.106 17 C -0.008 4.008 18 C -0.033 4.033 19 N -0.142 5.142 20 C -0.342 4.342 21 S 0.283 5.717 22 H 0.080 0.920 23 H 0.157 0.843 24 H 0.079 0.921 25 H 0.178 0.822 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.891 -6.991 -1.745 9.307 hybrid contribution 2.035 0.167 0.077 2.043 sum -3.856 -6.824 -1.668 8.014 Atomic orbital electron populations 1.23533 0.75935 1.06637 1.02333 1.85940 1.23224 1.22039 1.89521 1.22611 0.95015 0.88189 1.05673 1.20440 0.93343 0.96028 1.11770 1.18673 0.93137 0.90371 0.99703 1.21043 0.93688 0.94539 1.12107 1.17538 0.93510 0.91020 0.89336 1.19907 0.94073 1.00541 1.35355 0.88648 1.26792 1.02112 0.97380 0.91616 1.69841 1.37329 1.15411 1.21776 0.85140 0.77255 0.78475 0.78721 1.18927 1.19739 1.17505 1.21454 0.89237 1.00422 0.99531 1.15216 0.88301 0.87357 1.09921 1.26138 0.92549 0.92545 0.92093 1.81052 1.11337 1.10223 1.11571 1.21733 0.95461 0.94571 1.22414 1.83586 1.07866 0.96228 1.83980 0.91969 0.84265 0.92080 0.82179 0.85967 0.89562 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.23 113.37 1.16 1.37 15 2 O -0.29 -8.23 10.55 -90.34 -0.95 -9.18 15 3 C 0.04 1.48 7.10 66.74 0.47 1.95 15 4 C -0.19 -6.62 10.41 23.09 0.24 -6.38 15 5 C -0.01 -0.52 6.02 -20.38 -0.12 -0.65 15 6 C -0.19 -8.31 9.81 23.25 0.23 -8.08 15 7 C 0.09 4.26 5.55 -21.46 -0.12 4.14 15 8 C -0.47 -21.85 9.02 23.42 0.21 -21.64 15 9 H 0.10 4.16 7.91 -2.91 -0.02 4.14 15 10 C 0.04 1.68 5.12 85.22 0.44 2.11 15 11 N -0.82 -38.58 10.97 21.81 0.24 -38.34 15 12 Si 0.98 33.97 29.60 68.60 2.03 36.00 15 13 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 14 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15 15 H -0.25 -8.34 7.11 99.48 0.71 -7.64 15 16 C -0.08 -3.95 8.34 22.92 0.19 -3.75 15 17 C 0.00 0.01 5.75 -21.15 -0.12 -0.12 15 18 C 0.28 12.38 15.03 88.33 1.33 13.70 15 19 N -0.47 -20.58 18.54 19.00 0.35 -20.23 15 20 C -0.23 -9.59 6.36 23.57 0.15 -9.44 15 21 S 0.03 0.97 21.53 -56.49 -1.22 -0.24 15 22 H 0.06 1.16 8.01 -2.39 -0.02 1.14 15 23 H 0.14 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.06 1.15 8.01 -2.39 -0.02 1.13 15 25 H 0.16 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.12 4.83 8.06 -2.91 -0.02 4.81 15 27 H 0.29 12.60 8.30 -92.71 -0.77 11.83 15 28 H 0.12 6.16 6.16 -2.91 -0.02 6.15 15 Total: -1.00 -53.14 273.90 5.71 -47.43 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.21 Total: 11.33 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.05 Total: -26.77 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.59 Total: -58.56 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.95 Total: -9.18 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -1.22 Total: -0.24 kcal Total: -53.14 5.71 -47.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396204857.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal (2) G-P(sol) polarization free energy of solvation -53.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds