Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36139 * 116.99882 * 2 1 4 4 C 1.32113 * 122.61117 * 0.02562 * 3 2 1 5 5 S 1.75263 * 111.39451 * 179.97438 * 4 3 2 6 6 C 1.75930 * 92.26214 * 0.02562 * 5 4 3 7 7 C 1.39649 * 109.77388 * 359.97438 * 6 5 4 8 8 C 1.40905 * 119.19410 * 180.02562 * 7 6 5 9 9 C 1.39260 * 120.79906 * 359.97438 * 8 7 6 10 10 C 1.43199 * 119.79969 * 179.97438 * 9 8 7 11 11 N 6.29315 * 169.25539 * 179.97438 * 2 1 3 12 12 C 1.39368 * 120.39625 * 359.97438 * 9 8 7 13 13 C 1.40077 * 119.73649 * 0.02562 * 12 9 8 14 14 C 1.40983 * 120.01225 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00189 * 154.33043 * 14 13 12 16 16 C 1.39855 * 119.99820 * 334.33489 * 14 13 12 17 17 N 1.30911 * 119.99967 * 342.51482 * 16 14 13 18 18 Si 1.86800 * 120.00116 * 162.52431 * 16 14 13 19 19 H 1.48504 * 109.46939 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47226 * 119.99383 * 18 16 14 21 21 H 1.48497 * 109.46766 * 239.99908 * 18 16 14 22 22 H 1.08999 * 109.46929 * 299.99876 * 1 2 3 23 23 H 1.08994 * 109.47264 * 60.00237 * 1 2 3 24 24 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 25 25 H 1.08001 * 124.30148 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.60023 * 180.02562 * 8 7 6 27 27 H 1.08005 * 120.13396 * 179.97438 * 12 9 8 28 28 H 0.96998 * 119.99714 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0471 1.2130 0.0000 4 6 1.3788 2.3526 0.0005 5 16 2.4630 3.7297 0.0011 6 6 3.8871 2.6967 -0.0002 7 6 3.4980 1.3555 -0.0004 8 6 4.4878 0.3527 -0.0008 9 6 5.8401 0.6855 -0.0015 10 6 6.8281 -0.3510 -0.0014 11 7 7.6119 -1.1732 0.0005 12 6 6.2375 2.0214 -0.0024 13 6 5.2698 3.0342 -0.0020 14 6 5.6654 4.3874 -0.0034 15 1 5.0073 5.1419 -0.4083 16 6 6.9100 4.7526 0.5195 17 7 7.5565 3.9298 1.3060 18 14 7.6498 6.4147 0.0958 19 1 6.7274 7.1520 -0.8048 20 1 7.8563 7.1966 1.3412 21 1 8.9538 6.2166 -0.5865 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.3013 2.4263 0.0013 26 1 4.1943 -0.6866 -0.0014 27 1 7.2874 2.2747 -0.0025 28 1 8.4196 4.1833 1.6689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396206111.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = 22.538339 kcal Electronic energy + Delta-G solvation = -15912.820258 eV Core-core repulsion = 13213.259604 eV Total energy + Delta-G solvation = -2699.560653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29420 -37.78806 -35.73542 -34.38867 -32.73214 -30.39178 -28.39033 -27.36657 -25.63447 -22.93726 -21.83278 -20.45902 -18.29241 -16.69575 -16.53763 -16.32695 -15.42180 -15.28226 -15.04494 -14.11323 -13.60527 -13.27060 -13.19032 -12.72749 -12.41068 -12.14400 -11.99295 -11.78427 -11.56058 -11.33280 -11.21964 -10.98387 -10.69812 -10.54021 -10.32176 -9.77292 -9.65644 -9.44722 -8.26468 -7.63798 -7.10846 -6.72914 -4.64261 1.70066 1.88618 2.46503 2.80576 2.96015 3.00473 3.01624 3.25450 3.43136 3.67612 3.74672 3.76642 4.44869 4.79782 5.19755 5.22013 5.30252 5.33197 5.58096 5.97164 6.09422 6.27018 6.53233 6.58718 6.84772 6.92597 7.03905 7.39198 7.45659 7.69599 7.75386 8.09657 8.27725 8.42821 8.46451 9.85056 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.008126 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.065560 B = 3444.704650 C = 4895.406562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.125 3.875 4 C -0.326 4.326 5 S 0.076 5.924 6 C -0.178 4.178 7 C -0.046 4.046 8 C -0.151 4.151 9 C -0.010 4.010 10 C 0.284 3.716 11 N -0.468 5.468 12 C -0.113 4.113 13 C 0.141 3.859 14 C -0.443 4.443 15 H 0.088 0.912 16 C 0.076 3.924 17 N -0.777 5.777 18 Si 0.913 3.087 19 H -0.256 1.256 20 H -0.271 1.271 21 H -0.268 1.268 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 0.894 -1.598 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.222 6.222 3 C 0.068 3.932 4 C -0.460 4.460 5 S 0.337 5.663 6 C -0.294 4.294 7 C -0.053 4.053 8 C -0.176 4.176 9 C -0.015 4.015 10 C -0.030 4.030 11 N -0.145 5.145 12 C -0.139 4.139 13 C 0.134 3.866 14 C -0.471 4.471 15 H 0.106 0.894 16 C -0.145 4.145 17 N -0.401 5.401 18 Si 0.737 3.263 19 H -0.179 1.179 20 H -0.196 1.196 21 H -0.193 1.193 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.171 0.829 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.565 0.956 -1.437 7.759 hybrid contribution -0.116 -0.376 0.000 0.394 sum -7.681 0.580 -1.437 7.836 Atomic orbital electron populations 1.22946 0.79311 1.03180 1.00999 1.86050 1.20310 1.26639 1.89188 1.18774 0.90964 0.83863 0.99575 1.24550 1.03176 0.96875 1.21382 1.83514 0.94421 1.06876 1.81527 1.22605 0.97323 0.93584 1.15863 1.17892 0.88232 0.93160 1.06020 1.19989 0.89446 0.96890 1.11270 1.15687 0.88727 0.89398 1.07660 1.26127 0.92522 0.92328 0.92020 1.81073 1.10755 1.11285 1.11344 1.21247 1.00260 0.88442 1.03969 1.16753 0.86564 0.93832 0.89412 1.19554 1.01009 0.92902 1.33645 0.89351 1.25965 0.96313 0.99872 0.92339 1.69809 1.13454 1.36742 1.20055 0.86144 0.79659 0.80894 0.79614 1.17947 1.19605 1.19333 0.93110 0.93119 0.88781 0.82920 0.87323 0.84692 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.92 101.05 1.00 1.36 15 2 O -0.31 -5.24 10.56 -20.18 -0.21 -5.45 15 3 C 0.13 2.39 6.85 -38.49 -0.26 2.12 15 4 C -0.33 -5.67 9.93 28.81 0.29 -5.38 15 5 S 0.08 1.46 22.80 -107.50 -2.45 -0.99 15 6 C -0.18 -3.98 6.37 -37.48 -0.24 -4.22 15 7 C -0.05 -0.99 6.03 -105.35 -0.64 -1.62 15 8 C -0.15 -3.21 9.76 -38.19 -0.37 -3.58 15 9 C -0.01 -0.21 5.71 -107.17 -0.61 -0.82 15 10 C 0.28 6.07 15.29 -22.47 -0.34 5.73 15 11 N -0.47 -10.23 18.54 41.84 0.78 -9.46 15 12 C -0.11 -2.63 8.35 -38.47 -0.32 -2.95 15 13 C 0.14 3.34 5.58 -106.60 -0.60 2.74 15 14 C -0.44 -10.36 8.81 -37.94 -0.33 -10.70 15 15 H 0.09 2.00 7.74 -52.49 -0.41 1.60 15 16 C 0.08 1.69 5.12 -17.34 -0.09 1.61 15 17 N -0.78 -18.04 10.99 55.54 0.61 -17.43 15 18 Si 0.91 16.85 29.59 -169.99 -5.03 11.82 15 19 H -0.26 -4.69 7.11 56.52 0.40 -4.28 15 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 22 H 0.05 0.54 7.83 -51.93 -0.41 0.13 15 23 H 0.05 0.53 7.83 -51.93 -0.41 0.12 15 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.15 2.16 6.89 -52.49 -0.36 1.80 15 26 H 0.11 2.14 8.06 -52.49 -0.42 1.71 15 27 H 0.14 3.24 6.19 -52.48 -0.32 2.91 15 28 H 0.29 6.08 8.30 -40.82 -0.34 5.74 15 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -25.43 272.53 -6.61 -32.04 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.89 Total: 1.08 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.52 Total: -15.71 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 1.39 Total: -26.89 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.21 Total: -5.45 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.45 Total: -0.99 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.43 -6.61 -32.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396206111.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.574 kcal (2) G-P(sol) polarization free energy of solvation -25.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds