Wall clock time and date at job start Mon Mar 30 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 117.00027 * 2 1 4 4 C 1.38334 * 119.86776 * 180.02562 * 3 2 1 5 5 C 1.39731 * 120.67805 * 179.97438 * 4 3 2 6 6 S 1.75834 * 130.07784 * 180.28582 * 5 4 3 7 7 C 1.69985 * 93.20621 * 180.08336 * 6 5 4 8 8 C 1.36595 * 111.89759 * 359.64992 * 7 6 5 9 9 C 1.40912 * 123.28613 * 180.22778 * 8 7 6 10 10 H 1.08004 * 119.99655 * 153.75693 * 9 8 7 11 11 C 1.39664 * 120.00261 * 333.76287 * 9 8 7 12 12 N 1.31090 * 120.00289 * 163.39902 * 11 9 8 13 13 Si 1.86807 * 119.99897 * 343.39841 * 11 9 8 14 14 H 1.48496 * 109.47354 * 93.57441 * 13 11 9 15 15 H 1.48500 * 109.46988 * 213.57664 * 13 11 9 16 16 H 1.48501 * 109.47017 * 333.57909 * 13 11 9 17 17 C 1.39282 * 119.75958 * 0.02562 * 5 4 3 18 18 C 1.41929 * 119.21995 * 359.97438 * 17 5 4 19 19 C 1.43208 * 119.97390 * 179.97438 * 18 17 5 20 20 N 5.83428 * 80.93715 * 359.97438 * 2 1 3 21 21 C 1.38690 * 119.86787 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.47369 * 59.99999 * 1 2 3 23 23 H 1.08998 * 109.47665 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46807 * 299.99914 * 1 2 3 25 25 H 1.07996 * 119.65859 * 359.97438 * 4 3 2 26 26 H 1.07999 * 124.04609 * 179.91222 * 7 6 5 27 27 H 0.97005 * 120.00086 * 179.97438 * 12 11 9 28 28 H 1.07993 * 119.98798 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4276 1.2802 -0.0005 5 6 4.0795 2.5161 -0.0011 6 16 5.7977 2.8897 -0.0085 7 6 5.5300 4.5683 -0.0013 8 6 4.1982 4.8718 -0.0012 9 6 3.7059 6.1921 -0.0004 10 1 2.7312 6.4052 -0.4139 11 6 4.4784 7.2252 0.5349 12 7 4.1890 8.4728 0.2552 13 14 5.9241 6.8292 1.6497 14 1 7.1673 6.7555 0.8409 15 1 6.0637 7.8932 2.6762 16 1 5.6906 5.5239 2.3182 17 6 3.3326 3.6917 -0.0005 18 6 1.9155 3.6122 0.0000 19 6 1.1317 4.8108 0.0011 20 7 0.5100 5.7614 -0.0026 21 6 1.2880 2.3724 0.0005 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0083 0.3696 -0.0005 26 1 6.3185 5.3064 -0.0013 27 1 4.7253 9.1903 0.6273 28 1 0.2097 2.3132 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396206249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:07 Heat of formation + Delta-G solvation = 29.427602 kcal Electronic energy + Delta-G solvation = -16138.402485 eV Core-core repulsion = 13439.140573 eV Total energy + Delta-G solvation = -2699.261913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95272 -37.95518 -35.74160 -34.72918 -32.58778 -31.05254 -28.81089 -27.14490 -26.07436 -23.29697 -22.40202 -19.99219 -19.28461 -17.00481 -16.50535 -16.33406 -15.67185 -15.64705 -15.06004 -14.54832 -13.77606 -13.57537 -13.03392 -12.79146 -12.52141 -12.47615 -12.38407 -12.20525 -11.81826 -11.58447 -11.31893 -10.90542 -10.84083 -10.41830 -9.96288 -9.70330 -9.69022 -9.33510 -8.72434 -7.59194 -7.01053 -6.99293 -4.54299 1.03932 1.50511 2.38572 2.94092 3.14104 3.20844 3.26385 3.33938 3.48497 3.52295 3.53929 3.97146 4.32865 4.39791 5.01612 5.07096 5.10818 5.16505 5.34525 5.44879 5.61904 5.67436 6.00396 6.36393 6.43184 6.54133 6.70028 6.91717 7.25503 7.48210 7.53788 8.10979 8.17331 8.31412 8.66476 10.00097 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.008183 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.154287 B = 3421.050485 C = 4418.770671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.124 3.876 4 C -0.105 4.105 5 C -0.100 4.100 6 S 0.087 5.913 7 C -0.454 4.454 8 C 0.082 3.918 9 C -0.420 4.420 10 H 0.098 0.902 11 C 0.085 3.915 12 N -0.800 5.800 13 Si 0.917 3.083 14 H -0.271 1.271 15 H -0.294 1.294 16 H -0.239 1.239 17 C -0.050 4.050 18 C 0.052 3.948 19 C 0.265 3.735 20 N -0.413 5.413 21 C -0.174 4.174 22 H 0.055 0.945 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.287 0.713 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 -13.574 0.794 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.076 3.924 4 C -0.131 4.131 5 C -0.216 4.216 6 S 0.350 5.650 7 C -0.588 4.588 8 C 0.073 3.927 9 C -0.451 4.451 10 H 0.116 0.884 11 C -0.135 4.135 12 N -0.424 5.424 13 Si 0.744 3.256 14 H -0.198 1.198 15 H -0.222 1.222 16 H -0.162 1.162 17 C -0.063 4.063 18 C 0.047 3.953 19 C -0.050 4.050 20 N -0.089 5.089 21 C -0.199 4.199 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.150 0.850 26 H 0.158 0.842 27 H 0.097 0.903 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.136 -12.715 0.779 12.917 hybrid contribution -0.546 0.965 0.452 1.197 sum -2.682 -11.750 1.231 12.115 Atomic orbital electron populations 1.23030 0.78740 1.03585 1.01491 1.86041 1.21029 1.26526 1.89427 1.18233 0.91487 0.83563 0.99078 1.19599 0.90890 0.96231 1.06384 1.22349 0.99233 0.94910 1.05149 1.81811 0.99569 1.02757 1.80814 1.23674 0.99122 0.97038 1.39001 1.17388 0.89440 0.91905 0.93947 1.19198 1.04611 0.88915 1.32398 0.88425 1.26128 0.97733 0.94157 0.95477 1.69791 1.36978 1.00484 1.35144 0.86137 0.80099 0.79516 0.79881 1.19755 1.22190 1.16159 1.19402 0.91092 0.93750 1.02020 1.15489 0.89665 0.86952 1.03159 1.25358 0.92633 0.92743 0.94244 1.81138 1.11079 1.08926 1.07731 1.20816 0.99674 0.90467 1.08933 0.92655 0.88498 0.92652 0.85009 0.84181 0.90260 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 15 2 O -0.32 -4.08 10.49 -19.46 -0.20 -4.29 15 3 C 0.12 1.86 6.67 -39.38 -0.26 1.60 15 4 C -0.10 -1.70 9.99 -38.99 -0.39 -2.09 15 5 C -0.10 -1.93 6.43 -38.64 -0.25 -2.18 15 6 S 0.09 1.69 22.96 -107.50 -2.47 -0.78 15 7 C -0.45 -10.65 8.01 30.14 0.24 -10.41 15 8 C 0.08 2.03 5.27 -106.21 -0.56 1.47 15 9 C -0.42 -11.38 8.88 -38.04 -0.34 -11.72 15 10 H 0.10 2.79 5.57 -52.48 -0.29 2.50 15 11 C 0.09 2.27 5.47 -17.34 -0.09 2.17 15 12 N -0.80 -21.82 13.94 55.54 0.77 -21.05 15 13 Si 0.92 21.15 24.57 -169.99 -4.18 16.98 15 14 H -0.27 -6.09 6.69 56.52 0.38 -5.71 15 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.24 -5.55 6.73 56.52 0.38 -5.17 15 17 C -0.05 -1.10 6.01 -104.83 -0.63 -1.73 15 18 C 0.05 1.02 5.78 -106.29 -0.61 0.40 15 19 C 0.27 5.62 12.81 -22.47 -0.29 5.33 15 20 N -0.41 -9.41 17.82 41.84 0.75 -8.66 15 21 C -0.17 -2.70 8.70 -39.15 -0.34 -3.04 15 22 H 0.05 0.45 7.65 -51.93 -0.40 0.05 15 23 H 0.10 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.05 0.45 7.65 -51.93 -0.40 0.05 15 25 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.14 3.37 4.59 -52.49 -0.24 3.13 15 27 H 0.29 7.08 8.30 -40.82 -0.34 6.74 15 28 H 0.13 1.67 6.27 -52.49 -0.33 1.34 15 LS Contribution 260.35 15.07 3.92 3.92 Total: -1.00 -28.86 260.35 -5.62 -34.48 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -1.68 Total: -1.67 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.53 Total: -18.95 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 1.52 Total: -29.71 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.18 Total: 16.98 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.86 -5.62 -34.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396206249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.909 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds