Wall clock time and date at job start Mon Mar 30 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 116.99830 * 2 1 4 4 C 1.35664 * 119.07332 * 359.72859 * 3 2 1 5 5 C 1.41014 * 120.52670 * 179.69330 * 4 3 2 6 6 C 1.40386 * 120.58661 * 180.26869 * 5 4 3 7 7 H 1.07994 * 120.00412 * 205.09036 * 6 5 4 8 8 C 1.40193 * 119.99537 * 25.09223 * 6 5 4 9 9 N 1.30690 * 120.00366 * 15.41340 * 8 6 5 10 10 Si 1.86801 * 119.99598 * 195.41413 * 8 6 5 11 11 H 1.48493 * 109.47329 * 89.99988 * 10 8 6 12 12 H 1.48495 * 109.46937 * 210.00099 * 10 8 6 13 13 H 1.48499 * 109.47202 * 329.99388 * 10 8 6 14 14 C 1.46416 * 118.82837 * 0.58981 * 5 4 3 15 15 C 1.43196 * 120.41813 * 179.68053 * 14 5 4 16 16 N 6.73271 * 117.41484 * 359.97438 * 2 1 3 17 17 C 1.40785 * 119.16211 * 359.70527 * 14 5 4 18 18 S 1.76048 * 130.34100 * 180.02562 * 17 14 5 19 19 C 1.75486 * 91.49993 * 179.97438 * 18 17 14 20 20 C 1.32482 * 110.75626 * 359.97438 * 19 18 17 21 21 C 1.39929 * 120.14653 * 359.97438 * 17 14 5 22 22 H 1.09000 * 109.47085 * 60.00197 * 1 2 3 23 23 H 1.09003 * 109.46953 * 300.00251 * 1 2 3 24 24 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.73321 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00270 * 179.97438 * 9 8 6 27 27 H 1.07993 * 124.61860 * 179.97438 * 19 18 17 28 28 H 1.08001 * 122.03535 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2880 2.3350 -0.0056 5 6 1.8960 3.6073 0.0007 6 6 1.1136 4.7729 0.0006 7 1 1.5177 5.6945 -0.3916 8 6 -0.1922 4.7406 0.5096 9 7 -0.5808 3.7353 1.2488 10 14 -1.3768 6.1345 0.1313 11 1 -2.1212 5.8268 -1.1162 12 1 -2.3356 6.2879 1.2547 13 1 -0.6153 7.3971 -0.0453 14 6 3.3578 3.6912 0.0002 15 6 4.0108 4.9656 -0.0003 16 7 4.5290 5.9766 -0.0027 17 6 4.1131 2.5031 -0.0002 18 16 5.8569 2.2614 -0.0002 19 6 5.6615 0.5174 -0.0001 20 6 4.3781 0.1888 0.0005 21 6 3.4690 1.2609 0.0004 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2109 2.2560 -0.0096 26 1 -1.4842 3.7131 1.6013 27 1 6.4764 -0.1912 -0.0004 28 1 4.0502 -0.8402 0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396207163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:19 Heat of formation + Delta-G solvation = 18.754620 kcal Electronic energy + Delta-G solvation = -16258.199629 eV Core-core repulsion = 13558.474901 eV Total energy + Delta-G solvation = -2699.724728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32233 -37.02485 -35.64114 -34.92089 -32.88367 -29.35992 -29.17556 -27.10681 -25.49158 -22.75690 -21.89811 -19.82815 -18.67894 -17.33228 -16.69471 -15.89074 -15.30742 -15.04992 -14.79187 -13.90189 -13.78624 -13.03836 -12.94330 -12.85676 -12.17796 -11.98386 -11.88531 -11.74544 -11.64260 -11.19172 -11.17263 -10.90044 -10.73137 -10.54307 -10.27817 -9.95413 -9.87729 -9.30893 -8.29030 -7.65607 -7.45415 -6.66284 -4.97766 1.78008 2.10274 2.40334 2.69764 2.78961 2.83719 2.84708 3.22013 3.52026 3.90780 4.04039 4.09894 4.32292 5.18731 5.37525 5.60686 5.65624 5.72936 5.94865 6.13001 6.21378 6.39755 6.45885 6.49261 6.77234 6.85480 7.15365 7.26282 7.37422 7.52857 7.80522 8.05996 8.16018 8.39250 8.81417 9.46944 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.008847 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.189673 B = 3164.323055 C = 4512.244774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.195 3.805 4 C -0.247 4.247 5 C 0.192 3.808 6 C -0.402 4.402 7 H 0.094 0.906 8 C 0.073 3.927 9 N -0.751 5.751 10 Si 0.922 3.078 11 H -0.259 1.259 12 H -0.270 1.270 13 H -0.254 1.254 14 C -0.195 4.195 15 C 0.299 3.701 16 N -0.504 5.504 17 C 0.007 3.993 18 S 0.029 5.971 19 C -0.276 4.276 20 C -0.054 4.054 21 C -0.216 4.216 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.145 0.855 26 H 0.295 0.705 27 H 0.149 0.851 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 -6.176 -1.258 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.147 3.853 4 C -0.268 4.268 5 C 0.184 3.816 6 C -0.429 4.429 7 H 0.112 0.888 8 C -0.152 4.152 9 N -0.372 5.372 10 Si 0.744 3.256 11 H -0.183 1.183 12 H -0.194 1.194 13 H -0.177 1.177 14 C -0.209 4.209 15 C -0.010 4.010 16 N -0.184 5.184 17 C -0.111 4.111 18 S 0.289 5.711 19 C -0.409 4.409 20 C -0.084 4.084 21 C -0.223 4.223 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.862 -4.085 -1.103 4.318 hybrid contribution -2.195 -0.733 0.003 2.314 sum -3.057 -4.818 -1.100 5.811 Atomic orbital electron populations 1.22924 0.79251 1.02234 1.01957 1.85885 1.20747 1.28755 1.88588 1.18468 0.89522 0.83779 0.93521 1.20933 1.00465 0.90697 1.14697 1.18018 0.87395 0.92669 0.83566 1.19883 0.96117 0.97134 1.29747 0.88766 1.26248 0.98945 0.97855 0.92103 1.69721 1.19799 1.28869 1.18835 0.86023 0.79145 0.80813 0.79579 1.18332 1.19419 1.17744 1.15987 0.91179 0.83227 1.30553 1.25504 0.91752 0.92483 0.91274 1.81019 1.10358 1.11296 1.15694 1.21982 0.94497 0.95049 0.99602 1.83920 1.03393 1.02973 1.80797 1.24473 0.99637 0.96997 1.19819 1.19676 0.91588 0.98821 0.98273 1.16870 0.90430 0.91495 1.23464 0.93125 0.92076 0.89597 0.83774 0.89378 0.83300 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.78 101.05 0.99 1.47 15 2 O -0.33 -6.21 10.30 -18.88 -0.19 -6.40 15 3 C 0.19 4.20 6.71 -38.87 -0.26 3.94 15 4 C -0.25 -5.53 7.56 -39.45 -0.30 -5.83 15 5 C 0.19 4.59 5.73 -104.75 -0.60 3.99 15 6 C -0.40 -9.37 8.56 -38.04 -0.33 -9.69 15 7 H 0.09 2.22 7.36 -52.49 -0.39 1.83 15 8 C 0.07 1.55 5.19 -17.30 -0.09 1.46 15 9 N -0.75 -15.78 10.85 55.56 0.60 -15.18 15 10 Si 0.92 15.92 29.59 -169.99 -5.03 10.89 15 11 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 12 H -0.27 -4.50 7.11 56.52 0.40 -4.10 15 13 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 14 C -0.20 -4.68 5.98 -103.72 -0.62 -5.30 15 15 C 0.30 7.28 14.03 -22.47 -0.32 6.97 15 16 N -0.50 -12.45 18.54 41.84 0.78 -11.68 15 17 C 0.01 0.16 6.34 -37.99 -0.24 -0.08 15 18 S 0.03 0.57 23.00 -107.50 -2.47 -1.91 15 19 C -0.28 -4.93 11.10 28.82 0.32 -4.61 15 20 C -0.05 -1.04 9.92 -40.62 -0.40 -1.44 15 21 C -0.22 -4.71 5.88 -106.75 -0.63 -5.34 15 22 H 0.05 0.74 7.58 -51.93 -0.39 0.34 15 23 H 0.06 0.95 7.61 -51.93 -0.39 0.55 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 25 H 0.14 3.08 4.08 -52.49 -0.21 2.87 15 26 H 0.29 5.45 8.29 -40.82 -0.34 5.11 15 27 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 28 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 269.54 15.07 4.06 4.06 Total: -1.00 -25.61 269.54 -6.52 -32.13 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -1.79 Total: 2.56 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.47 Total: -14.48 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 1.38 Total: -26.86 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.19 Total: -6.40 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.47 Total: -1.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -25.61 -6.52 -32.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396207163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.883 kcal (2) G-P(sol) polarization free energy of solvation -25.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds