Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35725 * 116.99830 * 2 1 4 4 C 1.35664 * 119.07332 * 359.72859 * 3 2 1 5 5 C 1.41014 * 120.52670 * 179.69330 * 4 3 2 6 6 C 1.40386 * 120.58661 * 180.26869 * 5 4 3 7 7 H 1.07994 * 120.00412 * 205.09036 * 6 5 4 8 8 C 1.40193 * 119.99537 * 25.09223 * 6 5 4 9 9 N 1.30690 * 120.00366 * 15.41340 * 8 6 5 10 10 Si 1.86801 * 119.99598 * 195.41413 * 8 6 5 11 11 H 1.48493 * 109.47329 * 89.99988 * 10 8 6 12 12 H 1.48495 * 109.46937 * 210.00099 * 10 8 6 13 13 H 1.48499 * 109.47202 * 329.99388 * 10 8 6 14 14 C 1.46416 * 118.82837 * 0.58981 * 5 4 3 15 15 C 1.43196 * 120.41813 * 179.68053 * 14 5 4 16 16 N 6.73271 * 117.41484 * 359.97438 * 2 1 3 17 17 C 1.40785 * 119.16211 * 359.70527 * 14 5 4 18 18 S 1.76048 * 130.34100 * 180.02562 * 17 14 5 19 19 C 1.75486 * 91.49993 * 179.97438 * 18 17 14 20 20 C 1.32482 * 110.75626 * 359.97438 * 19 18 17 21 21 C 1.39929 * 120.14653 * 359.97438 * 17 14 5 22 22 H 1.09000 * 109.47085 * 60.00197 * 1 2 3 23 23 H 1.09003 * 109.46953 * 300.00251 * 1 2 3 24 24 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.73321 * 0.02562 * 4 3 2 26 26 H 0.97001 * 120.00270 * 179.97438 * 9 8 6 27 27 H 1.07993 * 124.61860 * 179.97438 * 19 18 17 28 28 H 1.08001 * 122.03535 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2880 2.3350 -0.0056 5 6 1.8960 3.6073 0.0007 6 6 1.1136 4.7729 0.0006 7 1 1.5177 5.6945 -0.3916 8 6 -0.1922 4.7406 0.5096 9 7 -0.5808 3.7353 1.2488 10 14 -1.3768 6.1345 0.1313 11 1 -2.1212 5.8268 -1.1162 12 1 -2.3356 6.2879 1.2547 13 1 -0.6153 7.3971 -0.0453 14 6 3.3578 3.6912 0.0002 15 6 4.0108 4.9656 -0.0003 16 7 4.5290 5.9766 -0.0027 17 6 4.1131 2.5031 -0.0002 18 16 5.8569 2.2614 -0.0002 19 6 5.6615 0.5174 -0.0001 20 6 4.3781 0.1888 0.0005 21 6 3.4690 1.2609 0.0004 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.2109 2.2560 -0.0096 26 1 -1.4842 3.7131 1.6013 27 1 6.4764 -0.1912 -0.0004 28 1 4.0502 -0.8402 0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396207163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = 6.045326 kcal Electronic energy + Delta-G solvation = -16258.750745 eV Core-core repulsion = 13558.474901 eV Total energy + Delta-G solvation = -2700.275844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89504 -38.59859 -37.33743 -36.68405 -34.50965 -30.99559 -30.81696 -28.50853 -27.08369 -24.35403 -23.55883 -21.39215 -20.30762 -18.99043 -18.30761 -17.46310 -16.83404 -16.47653 -16.32798 -15.53129 -15.20064 -14.76094 -14.52685 -14.49828 -13.84833 -13.68733 -13.49444 -13.34555 -13.03517 -12.88797 -12.69217 -12.32175 -12.17486 -12.13644 -11.83261 -11.51795 -11.47076 -10.91020 -9.89482 -9.30590 -9.04414 -8.29376 -6.70904 0.18887 0.35921 0.78731 1.27334 1.31613 1.36367 1.49039 1.69282 2.01939 2.09804 2.40154 2.55185 2.61118 3.43433 3.60267 4.16801 4.45134 4.52734 4.58659 4.66657 4.77087 4.83831 4.85209 4.89835 5.16706 5.25007 5.55819 5.63723 5.72421 5.87336 6.12348 6.37839 6.46118 6.76501 6.94881 7.91855 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.008847 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.189673 B = 3164.323055 C = 4512.244774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.328 6.328 3 C 0.194 3.806 4 C -0.258 4.258 5 C 0.171 3.829 6 C -0.429 4.429 7 H 0.079 0.921 8 C 0.046 3.954 9 N -0.765 5.765 10 Si 0.986 3.014 11 H -0.247 1.247 12 H -0.254 1.254 13 H -0.269 1.269 14 C -0.229 4.229 15 C 0.303 3.697 16 N -0.527 5.527 17 C -0.018 4.018 18 S 0.032 5.968 19 C -0.249 4.249 20 C -0.070 4.070 21 C -0.225 4.225 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.127 0.873 25 H 0.150 0.850 26 H 0.309 0.691 27 H 0.190 0.810 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -7.965 -1.243 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.241 6.241 3 C 0.146 3.854 4 C -0.279 4.279 5 C 0.162 3.838 6 C -0.455 4.455 7 H 0.097 0.903 8 C -0.178 4.178 9 N -0.387 5.387 10 Si 0.805 3.195 11 H -0.171 1.171 12 H -0.178 1.178 13 H -0.193 1.193 14 C -0.243 4.243 15 C -0.005 4.005 16 N -0.208 5.208 17 C -0.136 4.136 18 S 0.293 5.707 19 C -0.381 4.381 20 C -0.099 4.099 21 C -0.232 4.232 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.168 0.832 26 H 0.121 0.879 27 H 0.207 0.793 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.492 -5.899 -1.082 6.180 hybrid contribution -1.955 -0.352 0.021 1.987 sum -3.448 -6.250 -1.061 7.217 Atomic orbital electron populations 1.23213 0.77105 1.04845 1.01690 1.85878 1.22854 1.27306 1.88080 1.18564 0.89837 0.84438 0.92581 1.20978 1.00820 0.90518 1.15576 1.18319 0.87697 0.93643 0.84094 1.19984 0.97754 0.96573 1.31210 0.90297 1.26892 0.99314 1.00116 0.91475 1.69686 1.20902 1.29765 1.18329 0.85112 0.77086 0.77112 0.80206 1.17109 1.17792 1.19349 1.16171 0.91682 0.83472 1.33006 1.25741 0.91371 0.92586 0.90820 1.80977 1.11034 1.11626 1.17166 1.22245 0.96200 0.95065 1.00076 1.83917 1.01507 1.05044 1.80240 1.24967 1.00413 0.96112 1.16637 1.19871 0.91508 0.99296 0.99226 1.17313 0.91152 0.92125 1.22647 0.92887 0.92827 0.85539 0.83249 0.87919 0.79252 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.78 113.37 1.11 1.84 15 2 O -0.33 -11.92 10.30 -90.48 -0.93 -12.85 15 3 C 0.19 8.29 6.71 22.73 0.15 8.45 15 4 C -0.26 -11.69 7.56 22.35 0.17 -11.52 15 5 C 0.17 8.43 5.73 -19.94 -0.11 8.32 15 6 C -0.43 -20.68 8.56 23.27 0.20 -20.48 15 7 H 0.08 3.92 7.36 -2.91 -0.02 3.90 15 8 C 0.05 1.93 5.19 85.34 0.44 2.37 15 9 N -0.77 -31.92 10.85 21.87 0.24 -31.68 15 10 Si 0.99 32.25 29.59 68.60 2.03 34.28 15 11 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 12 H -0.25 -7.64 7.11 99.48 0.71 -6.93 15 13 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 14 C -0.23 -11.37 5.98 -19.28 -0.12 -11.49 15 15 C 0.30 15.32 14.03 88.33 1.24 16.56 15 16 N -0.53 -26.96 18.54 19.00 0.35 -26.61 15 17 C -0.02 -0.80 6.34 23.30 0.15 -0.65 15 18 S 0.03 1.24 23.00 -56.49 -1.30 -0.06 15 19 C -0.25 -8.05 11.10 66.69 0.74 -7.31 15 20 C -0.07 -2.50 9.92 21.71 0.22 -2.29 15 21 C -0.23 -9.65 5.88 -21.25 -0.13 -9.78 15 22 H 0.05 1.46 7.58 -2.39 -0.02 1.45 15 23 H 0.05 1.59 7.61 -2.39 -0.02 1.57 15 24 H 0.13 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.15 6.42 4.08 -2.91 -0.01 6.41 15 26 H 0.31 11.06 8.29 -92.71 -0.77 10.29 15 27 H 0.19 4.57 8.06 -2.91 -0.02 4.55 15 28 H 0.15 4.61 8.06 -2.91 -0.02 4.59 15 Total: -1.00 -55.86 269.54 5.66 -50.19 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.22 Total: 12.72 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.06 Total: -25.98 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.59 Total: -58.29 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.93 Total: -12.85 kcal Atomic # 14 Polarization: 32.25 SS G_CDS: 2.03 Total: 34.28 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.30 Total: -0.06 kcal Total: -55.86 5.66 -50.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396207163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.237 kcal (2) G-P(sol) polarization free energy of solvation -55.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds