Wall clock time and date at job start Mon Mar 30 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35382 * 116.99633 * 2 1 4 4 C 1.41274 * 119.83282 * 90.00674 * 3 2 1 5 5 C 1.45588 * 128.97980 * 0.02562 * 4 3 2 6 6 C 1.31722 * 114.88606 * 179.97438 * 5 4 3 7 7 S 1.75270 * 111.40343 * 0.02562 * 6 5 4 8 8 C 1.39598 * 119.18108 * 180.02562 * 4 3 2 9 9 C 1.42037 * 120.14664 * 359.76230 * 8 4 3 10 10 C 1.43199 * 119.73828 * 180.28384 * 9 8 4 11 11 N 6.71989 * 117.13259 * 359.64005 * 2 1 3 12 12 C 1.38317 * 120.51792 * 0.49582 * 9 8 4 13 13 C 1.40641 * 119.84432 * 359.50842 * 12 9 8 14 14 C 1.41137 * 120.00959 * 180.21296 * 13 12 9 15 15 H 1.08002 * 119.99854 * 154.31703 * 14 13 12 16 16 C 1.39778 * 120.00081 * 334.31574 * 14 13 12 17 17 N 1.30983 * 119.99970 * 342.65436 * 16 14 13 18 18 Si 1.86801 * 119.99941 * 162.65938 * 16 14 13 19 19 H 1.48495 * 109.47257 * 89.99620 * 18 16 14 20 20 H 1.48498 * 109.46925 * 210.00003 * 18 16 14 21 21 H 1.48500 * 109.46881 * 329.99542 * 18 16 14 22 22 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46847 * 299.99655 * 1 2 3 24 24 H 1.08994 * 109.47013 * 60.00411 * 1 2 3 25 25 H 1.08001 * 122.55639 * 359.97438 * 5 4 3 26 26 H 1.07993 * 124.29242 * 180.02562 * 6 5 4 27 27 H 1.07997 * 120.07316 * 179.72350 * 12 9 8 28 28 H 0.97000 * 119.99793 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2063 0.0000 4 6 2.3628 1.8325 1.2255 5 6 2.1245 1.3633 2.5830 6 6 2.5398 2.1773 3.5317 7 16 3.2738 3.6204 2.8603 8 6 2.9959 3.0765 1.2096 9 6 3.3173 3.6976 -0.0266 10 6 3.9722 4.9710 -0.0327 11 7 4.4937 5.9803 -0.0376 12 6 2.9986 3.0841 -1.2247 13 6 2.3606 1.8307 -1.2212 14 6 2.0380 1.1995 -2.4416 15 1 1.9455 0.1244 -2.4856 16 6 1.8380 1.9659 -3.5934 17 7 1.6117 3.2521 -3.4931 18 14 1.8934 1.1557 -5.2756 19 1 0.5322 0.6931 -5.6473 20 1 2.3750 2.1361 -6.2816 21 1 2.8172 -0.0063 -5.2351 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.6439 0.4198 2.7959 26 1 2.4405 1.9804 4.5889 27 1 3.2423 3.5649 -2.1605 28 1 1.4726 3.7839 -4.2923 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396207201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:44 Heat of formation + Delta-G solvation = 23.678848 kcal Electronic energy + Delta-G solvation = -16278.407979 eV Core-core repulsion = 13578.896782 eV Total energy + Delta-G solvation = -2699.511197 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.99383 -36.71155 -35.72713 -35.06714 -33.09153 -29.99180 -28.51158 -26.39509 -25.45945 -22.76399 -22.15697 -20.13202 -18.34604 -17.19154 -16.75236 -15.97761 -15.13895 -14.71776 -14.45773 -13.91412 -13.59398 -13.29177 -13.20728 -12.96164 -12.44260 -12.14589 -12.01958 -11.72684 -11.49832 -11.30567 -11.16685 -11.00751 -10.54288 -10.35931 -10.12191 -10.06252 -9.43469 -8.90757 -8.44050 -7.68569 -7.23298 -6.93743 -4.66636 1.48517 1.87451 2.32120 2.74478 2.76578 2.92655 2.97603 3.12348 3.35243 3.68175 3.70788 4.30548 4.70146 4.81036 5.28992 5.32444 5.90705 6.01064 6.07200 6.09917 6.24182 6.32895 6.53911 6.67018 6.80687 6.87511 6.98600 7.08392 7.34329 7.64310 7.99778 8.13627 8.28869 8.43945 8.76409 9.78211 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.008428 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.730749 B = 3321.464509 C = 4509.014330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.320 6.320 3 C 0.007 3.993 4 C -0.050 4.050 5 C -0.105 4.105 6 C -0.205 4.205 7 S 0.023 5.977 8 C -0.185 4.185 9 C -0.007 4.007 10 C 0.275 3.725 11 N -0.457 5.457 12 C -0.049 4.049 13 C 0.092 3.908 14 C -0.426 4.426 15 H 0.095 0.905 16 C 0.071 3.929 17 N -0.785 5.785 18 Si 0.917 3.083 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.256 1.256 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.135 0.865 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 -4.223 3.829 6.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C -0.042 4.042 4 C -0.057 4.057 5 C -0.136 4.136 6 C -0.338 4.338 7 S 0.283 5.717 8 C -0.302 4.302 9 C -0.015 4.015 10 C -0.038 4.038 11 N -0.134 5.134 12 C -0.072 4.072 13 C 0.087 3.913 14 C -0.454 4.454 15 H 0.113 0.887 16 C -0.149 4.149 17 N -0.409 5.409 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.179 1.179 22 H 0.092 0.908 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.152 0.848 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.682 -1.359 4.373 4.630 hybrid contribution -1.165 -1.634 -1.291 2.386 sum -1.847 -2.993 3.083 4.677 Atomic orbital electron populations 1.22830 0.82280 1.00910 1.00047 1.85878 1.17921 1.25806 1.94060 1.18354 1.05877 0.90461 0.89546 1.19034 1.00979 0.92917 0.92720 1.20894 1.01767 1.00159 0.90809 1.24697 1.07821 0.98964 1.02333 1.83698 1.66761 1.23107 0.98150 1.21605 1.14880 0.99672 0.94001 1.15255 1.04862 0.88735 0.92638 1.26057 0.92485 0.92903 0.92403 1.81072 1.11549 1.11983 1.08768 1.21462 0.94961 0.95868 0.94947 1.17477 0.90911 0.90613 0.92261 1.19582 1.38619 0.95943 0.91281 0.88662 1.26085 0.91870 0.94688 1.02306 1.69806 1.31103 1.07087 1.32862 0.86135 0.79936 0.80258 0.79654 1.19111 1.19803 1.17926 0.90820 0.95175 0.93539 0.84767 0.82794 0.84135 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.13 101.05 1.12 1.72 15 2 O -0.32 -6.70 9.51 -17.84 -0.17 -6.87 15 3 C 0.01 0.15 5.81 -37.47 -0.22 -0.07 15 4 C -0.05 -1.05 6.03 -105.31 -0.63 -1.68 15 5 C -0.10 -1.87 10.25 -38.53 -0.40 -2.26 15 6 C -0.20 -3.33 11.01 28.85 0.32 -3.01 15 7 S 0.02 0.42 22.92 -107.50 -2.46 -2.04 15 8 C -0.18 -3.94 6.36 -37.62 -0.24 -4.18 15 9 C -0.01 -0.15 5.76 -106.49 -0.61 -0.76 15 10 C 0.28 5.99 15.03 -22.47 -0.34 5.66 15 11 N -0.46 -10.09 18.54 41.84 0.78 -9.32 15 12 C -0.05 -1.12 8.31 -38.65 -0.32 -1.44 15 13 C 0.09 2.15 5.55 -106.93 -0.59 1.56 15 14 C -0.43 -9.81 8.66 -37.91 -0.33 -10.14 15 15 H 0.10 2.16 7.62 -52.49 -0.40 1.76 15 16 C 0.07 1.54 5.13 -17.34 -0.09 1.45 15 17 N -0.78 -17.74 10.99 55.54 0.61 -17.13 15 18 Si 0.92 16.54 29.59 -169.99 -5.03 11.51 15 19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 21 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.13 2.12 8.06 -52.49 -0.42 1.70 15 26 H 0.15 1.95 8.06 -52.49 -0.42 1.53 15 27 H 0.14 3.28 6.20 -52.49 -0.33 2.96 15 28 H 0.29 5.98 8.30 -40.82 -0.34 5.64 15 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -24.78 274.57 -6.44 -31.23 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -1.97 Total: 1.65 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.33 Total: -13.17 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 1.39 Total: -26.44 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.17 Total: -6.87 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.51 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.46 Total: -2.04 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -24.78 -6.44 -31.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396207201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.906 kcal (2) G-P(sol) polarization free energy of solvation -24.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds