Wall clock time and date at job start Mon Mar 30 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35682 * 116.99823 * 2 1 4 4 C 1.38874 * 120.07859 * 0.36525 * 3 2 1 5 5 C 1.37395 * 120.42219 * 180.29383 * 4 3 2 6 6 C 1.40701 * 120.79451 * 359.65946 * 5 4 3 7 7 C 1.46709 * 129.37114 * 180.02562 * 6 5 4 8 8 C 1.40780 * 123.29513 * 359.97438 * 7 6 5 9 9 H 1.08000 * 119.99894 * 22.38933 * 8 7 6 10 10 C 1.39731 * 120.00107 * 202.38296 * 8 7 6 11 11 N 1.31059 * 119.99913 * 11.09813 * 10 8 7 12 12 Si 1.86801 * 120.00046 * 191.10029 * 10 8 7 13 13 H 1.48505 * 109.46803 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47364 * 119.99971 * 12 10 8 15 15 H 1.48505 * 109.47075 * 240.00098 * 12 10 8 16 16 C 1.36425 * 113.41237 * 179.97438 * 7 6 5 17 17 S 1.69989 * 111.92387 * 359.97438 * 16 7 6 18 18 C 1.39167 * 119.42747 * 359.97438 * 6 5 4 19 19 C 1.39785 * 120.07025 * 179.97438 * 3 2 1 20 20 C 1.43200 * 120.03592 * 0.02879 * 19 3 2 21 21 N 3.52280 * 165.74824 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47098 * 300.00096 * 1 2 3 24 24 H 1.09004 * 109.46707 * 59.99816 * 1 2 3 25 25 H 1.08000 * 119.78631 * 359.90244 * 4 3 2 26 26 H 1.07996 * 119.60197 * 179.63053 * 5 4 3 27 27 H 0.97007 * 119.99698 * 180.02562 * 11 10 8 28 28 H 1.08000 * 124.03928 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2902 2.3747 0.0077 5 6 1.9065 3.6026 0.0016 6 6 3.3099 3.7042 -0.0052 7 6 4.1561 4.9026 -0.0117 8 6 3.6408 6.2126 -0.0126 9 1 2.6398 6.3994 0.3476 10 6 4.4242 7.2714 -0.4793 11 7 5.5447 7.0273 -1.1138 12 14 3.8745 9.0345 -0.1988 13 1 2.5842 9.0397 0.5363 14 1 4.9016 9.7525 0.5979 15 1 3.7003 9.7129 -1.5083 16 6 5.4915 4.6232 -0.0168 17 16 5.7898 2.9497 -0.0134 18 6 4.0794 2.5446 -0.0053 19 6 3.4408 1.2839 0.0005 20 6 4.2230 0.0844 0.0005 21 7 4.8434 -0.8673 -0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2118 2.3156 0.0120 26 1 1.3066 4.5006 0.0017 27 1 6.0888 7.7624 -1.4374 28 1 6.2665 5.3754 -0.0216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396207887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:34 Heat of formation + Delta-G solvation = 23.302847 kcal Electronic energy + Delta-G solvation = -15907.572049 eV Core-core repulsion = 13208.044547 eV Total energy + Delta-G solvation = -2699.527502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91454 -37.63658 -36.03495 -34.59674 -32.12416 -30.96334 -28.36002 -26.90447 -26.19568 -23.14910 -22.24358 -20.01733 -18.77354 -17.43459 -16.39680 -16.15762 -15.68607 -15.40303 -14.98342 -14.13039 -13.75087 -13.51733 -13.07306 -12.80517 -12.46169 -12.29158 -12.14040 -11.80462 -11.61739 -11.35493 -11.24639 -11.13195 -10.79191 -10.47169 -10.18417 -9.81926 -9.51071 -9.33118 -8.56427 -7.41728 -6.85761 -6.74431 -4.42325 1.21056 1.70467 2.50833 2.87510 3.04803 3.08595 3.19725 3.25489 3.43817 3.68133 3.86108 3.91916 4.34232 4.45458 5.02211 5.17331 5.19106 5.29004 5.41731 5.53457 5.78817 5.86705 6.10649 6.51650 6.68972 6.83475 6.98032 7.09119 7.49289 7.62940 7.88952 8.03650 8.35352 8.67451 8.78901 10.19450 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.006582 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.927480 B = 4253.188716 C = 5233.458382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.176 3.824 4 C -0.234 4.234 5 C 0.001 3.999 6 C -0.095 4.095 7 C 0.088 3.912 8 C -0.433 4.433 9 H 0.078 0.922 10 C 0.068 3.932 11 N -0.796 5.796 12 Si 0.913 3.087 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.275 1.275 16 C -0.363 4.363 17 S 0.080 5.920 18 C -0.080 4.080 19 C -0.059 4.059 20 C 0.278 3.722 21 N -0.444 5.444 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.278 0.722 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 -3.670 1.463 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.126 3.874 4 C -0.256 4.256 5 C -0.020 4.020 6 C -0.106 4.106 7 C 0.080 3.920 8 C -0.465 4.465 9 H 0.096 0.904 10 C -0.148 4.148 11 N -0.422 5.422 12 Si 0.738 3.262 13 H -0.185 1.185 14 H -0.199 1.199 15 H -0.201 1.201 16 C -0.499 4.499 17 S 0.345 5.655 18 C -0.199 4.199 19 C -0.071 4.071 20 C -0.035 4.035 21 N -0.122 5.122 22 H 0.115 0.885 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.089 0.911 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.213 -5.915 1.333 8.682 hybrid contribution -1.939 2.360 -0.040 3.055 sum -8.153 -3.555 1.293 8.987 Atomic orbital electron populations 1.23059 0.78278 1.03648 1.01656 1.86013 1.21475 1.26997 1.88392 1.18490 0.89757 0.84355 0.94791 1.20737 0.99496 0.91494 1.13918 1.20900 0.93077 0.96749 0.91234 1.19615 0.93192 0.92982 1.04764 1.17245 0.89540 0.90896 0.94361 1.18977 1.00792 0.90227 1.36530 0.90417 1.25798 0.94607 1.01457 0.92957 1.69847 1.11756 1.33870 1.26743 0.86175 0.79762 0.81438 0.78834 1.18499 1.19872 1.20073 1.24450 1.00669 0.94708 1.30056 1.82212 1.00246 1.05003 1.78003 1.22464 0.99628 0.93622 1.04210 1.14331 0.87756 0.85999 1.18979 1.25400 0.92863 0.92470 0.92810 1.81085 1.09166 1.10796 1.11122 0.88548 0.92397 0.92393 0.85037 0.85114 0.91092 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 15 2 O -0.32 -4.73 9.90 -18.75 -0.19 -4.92 15 3 C 0.18 2.96 6.68 -38.77 -0.26 2.70 15 4 C -0.23 -3.53 8.99 -39.65 -0.36 -3.89 15 5 C 0.00 0.02 9.83 -38.96 -0.38 -0.36 15 6 C -0.09 -2.06 6.02 -105.20 -0.63 -2.69 15 7 C 0.09 2.16 5.69 -106.17 -0.60 1.56 15 8 C -0.43 -10.58 9.07 -38.06 -0.35 -10.93 15 9 H 0.08 1.77 7.66 -52.49 -0.40 1.37 15 10 C 0.07 1.63 5.36 -17.32 -0.09 1.54 15 11 N -0.80 -19.88 10.79 55.54 0.60 -19.28 15 12 Si 0.91 17.85 29.57 -169.99 -5.03 12.82 15 13 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 15 H -0.28 -5.35 7.11 56.52 0.40 -4.94 15 16 C -0.36 -9.00 9.51 30.08 0.29 -8.71 15 17 S 0.08 1.75 22.64 -107.50 -2.43 -0.69 15 18 C -0.08 -1.71 6.31 -38.06 -0.24 -1.95 15 19 C -0.06 -1.15 5.79 -106.22 -0.61 -1.76 15 20 C 0.28 5.57 14.58 -22.47 -0.33 5.24 15 21 N -0.44 -9.18 18.54 41.84 0.78 -8.41 15 22 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.06 0.48 7.64 -51.93 -0.40 0.08 15 24 H 0.06 0.49 7.67 -51.93 -0.40 0.09 15 25 H 0.13 1.49 6.28 -52.49 -0.33 1.16 15 26 H 0.13 2.07 7.85 -52.49 -0.41 1.66 15 27 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 28 H 0.17 4.37 6.26 -52.49 -0.33 4.04 15 LS Contribution 270.21 15.07 4.07 4.07 Total: -1.00 -27.54 270.21 -6.60 -34.14 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -1.82 Total: 0.25 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.58 Total: -18.00 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 1.37 Total: -27.68 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.19 Total: -4.92 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.43 Total: -0.69 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.54 -6.60 -34.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396207887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.445 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds