Wall clock time and date at job start Mon Mar 30 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35682 * 116.99823 * 2 1 4 4 C 1.38874 * 120.07859 * 0.36525 * 3 2 1 5 5 C 1.37395 * 120.42219 * 180.29383 * 4 3 2 6 6 C 1.40701 * 120.79451 * 359.65946 * 5 4 3 7 7 C 1.46709 * 129.37114 * 180.02562 * 6 5 4 8 8 C 1.40780 * 123.29513 * 359.97438 * 7 6 5 9 9 H 1.08000 * 119.99894 * 22.38933 * 8 7 6 10 10 C 1.39731 * 120.00107 * 202.38296 * 8 7 6 11 11 N 1.31059 * 119.99913 * 11.09813 * 10 8 7 12 12 Si 1.86801 * 120.00046 * 191.10029 * 10 8 7 13 13 H 1.48505 * 109.46803 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47364 * 119.99971 * 12 10 8 15 15 H 1.48505 * 109.47075 * 240.00098 * 12 10 8 16 16 C 1.36425 * 113.41237 * 179.97438 * 7 6 5 17 17 S 1.69989 * 111.92387 * 359.97438 * 16 7 6 18 18 C 1.39167 * 119.42747 * 359.97438 * 6 5 4 19 19 C 1.39785 * 120.07025 * 179.97438 * 3 2 1 20 20 C 1.43200 * 120.03592 * 0.02879 * 19 3 2 21 21 N 3.52280 * 165.74824 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47272 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47098 * 300.00096 * 1 2 3 24 24 H 1.09004 * 109.46707 * 59.99816 * 1 2 3 25 25 H 1.08000 * 119.78631 * 359.90244 * 4 3 2 26 26 H 1.07996 * 119.60197 * 179.63053 * 5 4 3 27 27 H 0.97007 * 119.99698 * 180.02562 * 11 10 8 28 28 H 1.08000 * 124.03928 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2902 2.3747 0.0077 5 6 1.9065 3.6026 0.0016 6 6 3.3099 3.7042 -0.0052 7 6 4.1561 4.9026 -0.0117 8 6 3.6408 6.2126 -0.0126 9 1 2.6398 6.3994 0.3476 10 6 4.4242 7.2714 -0.4793 11 7 5.5447 7.0273 -1.1138 12 14 3.8745 9.0345 -0.1988 13 1 2.5842 9.0397 0.5363 14 1 4.9016 9.7525 0.5979 15 1 3.7003 9.7129 -1.5083 16 6 5.4915 4.6232 -0.0168 17 16 5.7898 2.9497 -0.0134 18 6 4.0794 2.5446 -0.0053 19 6 3.4408 1.2839 0.0005 20 6 4.2230 0.0844 0.0005 21 7 4.8434 -0.8673 -0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2118 2.3156 0.0120 26 1 1.3066 4.5006 0.0017 27 1 6.0888 7.7624 -1.4374 28 1 6.2665 5.3754 -0.0216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396207887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:34 Heat of formation + Delta-G solvation = 8.274851 kcal Electronic energy + Delta-G solvation = -15908.223712 eV Core-core repulsion = 13208.044547 eV Total energy + Delta-G solvation = -2700.179165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23763 -39.03526 -37.62433 -36.24518 -33.78654 -32.39272 -29.79248 -27.99615 -27.90050 -24.66586 -23.73503 -21.61984 -20.23525 -18.91115 -17.97534 -17.69653 -16.86072 -16.74458 -16.58478 -15.53311 -15.13419 -14.97363 -14.63925 -14.25094 -13.90442 -13.88997 -13.67268 -13.26880 -13.13935 -12.74140 -12.59262 -12.51530 -12.33796 -12.00600 -11.71221 -11.30410 -11.20013 -10.99408 -10.15798 -8.98104 -8.56571 -8.49239 -6.27777 -0.24904 0.21078 0.92051 1.29897 1.45116 1.59285 1.62576 1.71372 1.93089 2.18822 2.27104 2.32644 2.80116 2.95458 3.40930 3.91874 4.16177 4.28025 4.41627 4.51511 4.53608 4.62137 4.85326 5.12924 5.17601 5.27965 5.40403 5.54564 5.78908 6.02731 6.30976 6.50350 6.55079 6.86385 6.99104 8.44077 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.006582 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.927480 B = 4253.188716 C = 5233.458382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.329 6.329 3 C 0.198 3.802 4 C -0.207 4.207 5 C 0.005 3.995 6 C -0.125 4.125 7 C 0.071 3.929 8 C -0.458 4.458 9 H 0.092 0.908 10 C 0.024 3.976 11 N -0.832 5.832 12 Si 0.987 3.013 13 H -0.248 1.248 14 H -0.275 1.275 15 H -0.271 1.271 16 C -0.397 4.397 17 S 0.066 5.934 18 C -0.084 4.084 19 C -0.082 4.082 20 C 0.285 3.715 21 N -0.465 5.465 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.184 0.816 26 H 0.153 0.847 27 H 0.282 0.718 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -3.879 1.707 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.147 3.853 4 C -0.228 4.228 5 C -0.015 4.015 6 C -0.135 4.135 7 C 0.063 3.937 8 C -0.490 4.490 9 H 0.110 0.890 10 C -0.189 4.189 11 N -0.459 5.459 12 Si 0.808 3.192 13 H -0.171 1.171 14 H -0.201 1.201 15 H -0.196 1.196 16 C -0.533 4.533 17 S 0.330 5.670 18 C -0.203 4.203 19 C -0.094 4.094 20 C -0.028 4.028 21 N -0.142 5.142 22 H 0.138 0.862 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.201 0.799 26 H 0.171 0.829 27 H 0.092 0.908 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.044 -6.160 1.580 11.888 hybrid contribution -0.958 2.245 -0.121 2.444 sum -11.002 -3.915 1.459 11.769 Atomic orbital electron populations 1.23558 0.74964 1.06067 1.03543 1.86037 1.24779 1.25918 1.87446 1.18596 0.88874 0.85855 0.91973 1.21204 1.01774 0.89440 1.10413 1.21204 0.91366 0.98860 0.90077 1.19708 0.95038 0.91707 1.07055 1.17674 0.90070 0.92394 0.93585 1.19377 1.01693 0.90746 1.37198 0.89027 1.26757 0.94362 1.05682 0.92132 1.69972 1.13022 1.35283 1.27646 0.85071 0.79597 0.75787 0.78743 1.17069 1.20050 1.19637 1.24251 1.00667 0.95621 1.32785 1.81941 1.02077 1.03446 1.79494 1.22485 0.98602 0.94564 1.04672 1.14453 0.89203 0.84836 1.20913 1.25563 0.92551 0.92435 0.92232 1.81077 1.09492 1.11567 1.12105 0.86240 0.90325 0.90476 0.79862 0.82932 0.90761 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.33 -8.51 9.90 -90.00 -0.89 -9.40 15 3 C 0.20 5.97 6.68 22.80 0.15 6.12 15 4 C -0.21 -5.24 8.99 22.22 0.20 -5.04 15 5 C 0.01 0.17 9.83 22.67 0.22 0.39 15 6 C -0.13 -5.39 6.02 -20.24 -0.12 -5.51 15 7 C 0.07 3.62 5.69 -20.87 -0.12 3.50 15 8 C -0.46 -22.61 9.07 23.25 0.21 -22.40 15 9 H 0.09 4.09 7.66 -2.91 -0.02 4.07 15 10 C 0.02 1.15 5.36 85.17 0.46 1.61 15 11 N -0.83 -43.24 10.79 21.80 0.24 -43.01 15 12 Si 0.99 36.47 29.57 68.60 2.03 38.49 15 13 H -0.25 -8.52 7.11 99.48 0.71 -7.81 15 14 H -0.28 -10.15 7.11 99.48 0.71 -9.44 15 15 H -0.27 -9.76 7.11 99.48 0.71 -9.06 15 16 C -0.40 -20.93 9.51 67.40 0.64 -20.29 15 17 S 0.07 3.05 22.64 -56.49 -1.28 1.77 15 18 C -0.08 -3.63 6.31 23.25 0.15 -3.48 15 19 C -0.08 -3.11 5.79 -20.90 -0.12 -3.23 15 20 C 0.29 11.30 14.58 88.33 1.29 12.59 15 21 N -0.46 -19.12 18.54 19.00 0.35 -18.77 15 22 H 0.12 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.08 0.80 7.64 -2.39 -0.02 0.78 15 24 H 0.08 0.81 7.67 -2.38 -0.02 0.79 15 25 H 0.18 2.79 6.28 -2.91 -0.02 2.77 15 26 H 0.15 4.25 7.85 -2.91 -0.02 4.23 15 27 H 0.28 13.41 8.30 -92.70 -0.77 12.64 15 28 H 0.14 7.91 6.26 -2.91 -0.02 7.89 15 Total: -1.00 -63.11 270.21 5.73 -57.38 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.21 Total: 7.98 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 4.07 Total: -34.46 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.59 Total: -61.78 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.89 Total: -9.40 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.28 Total: 1.77 kcal Total: -63.11 5.73 -57.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396207887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.657 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds