Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36173 * 116.99852 * 2 1 4 4 C 1.31911 * 122.60083 * 359.97253 * 3 2 1 5 5 S 1.75249 * 111.51434 * 180.02562 * 4 3 2 6 6 C 1.75978 * 92.29631 * 0.02562 * 5 4 3 7 7 C 1.40079 * 109.66667 * 359.97438 * 6 5 4 8 8 C 1.40382 * 119.22988 * 180.02562 * 7 6 5 9 9 C 1.40071 * 120.48287 * 359.97438 * 8 7 6 10 10 C 1.41325 * 119.96007 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99894 * 24.79723 * 10 9 8 12 12 C 1.39824 * 120.00251 * 204.80013 * 10 9 8 13 13 N 1.30911 * 119.99635 * 18.04201 * 12 10 9 14 14 Si 1.86797 * 119.99822 * 198.04877 * 12 10 9 15 15 H 1.48494 * 109.47485 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47003 * 120.00099 * 14 12 10 17 17 H 1.48501 * 109.47038 * 239.99322 * 14 12 10 18 18 C 1.40760 * 120.08187 * 0.02562 * 9 8 7 19 19 C 1.38303 * 119.79060 * 0.02562 * 18 9 8 20 20 C 1.43193 * 119.83480 * 179.97438 * 19 18 9 21 21 N 7.14032 * 129.45483 * 359.97438 * 2 1 3 22 22 H 1.09000 * 109.47077 * 300.00528 * 1 2 3 23 23 H 1.09009 * 109.46939 * 60.00006 * 1 2 3 24 24 H 1.08989 * 109.47544 * 179.97438 * 1 2 3 25 25 H 1.08005 * 124.24252 * 0.02854 * 4 3 2 26 26 H 1.07999 * 119.75995 * 179.97438 * 8 7 6 27 27 H 0.97000 * 119.99960 * 180.02562 * 13 12 10 28 28 H 1.07994 * 120.10706 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 1.3796 2.3511 -0.0005 5 16 2.4606 3.7304 -0.0011 6 6 3.8881 2.7013 -0.0014 7 6 3.4991 1.3556 -0.0004 8 6 4.4857 0.3569 0.0001 9 6 5.8438 0.6997 -0.0009 10 6 6.8277 -0.3148 -0.0009 11 1 6.5940 -1.2938 -0.3925 12 6 8.1038 -0.0511 0.5061 13 7 8.2970 0.9809 1.2881 14 14 9.5329 -1.1713 0.0676 15 1 9.0545 -2.2580 -0.8241 16 1 10.5826 -0.3849 -0.6288 17 1 10.0978 -1.7616 1.3076 18 6 6.2298 2.0533 -0.0018 19 6 5.2640 3.0432 -0.0013 20 6 5.6556 4.4206 -0.0017 21 7 5.9664 5.5132 -0.0025 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0275 -0.0005 25 1 0.3020 2.4234 -0.0006 26 1 4.1954 -0.6834 0.0012 27 1 9.1824 1.1641 1.6396 28 1 7.2768 2.3180 -0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396208558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = 23.589582 kcal Electronic energy + Delta-G solvation = -15877.758598 eV Core-core repulsion = 13178.243530 eV Total energy + Delta-G solvation = -2699.515068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34277 -37.84404 -35.73984 -34.51610 -32.57049 -30.49384 -28.52863 -27.36015 -25.67628 -22.71299 -22.22581 -20.04636 -18.83315 -16.87479 -16.49315 -16.00396 -15.44930 -15.34537 -15.09062 -14.22697 -13.68176 -13.35590 -13.32944 -12.52176 -12.32708 -12.31262 -12.02180 -11.79742 -11.73640 -11.31512 -11.21142 -10.98688 -10.81994 -10.42288 -10.31699 -9.91976 -9.82428 -9.30418 -8.36423 -7.70178 -7.13043 -6.80188 -4.62649 1.60197 1.89460 2.31632 2.77324 2.79213 2.96787 3.01795 3.12892 3.36176 3.65007 3.74495 3.83963 4.36269 4.80015 5.15800 5.21826 5.25695 5.29355 5.56807 5.89700 6.08212 6.32293 6.45847 6.57382 6.87469 6.94269 6.98145 7.20907 7.52935 7.61955 7.79565 8.11183 8.23616 8.43741 8.53001 9.86920 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.007243 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.070100 B = 3864.616693 C = 5166.620591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.134 3.866 4 C -0.318 4.318 5 S 0.039 5.961 6 C -0.182 4.182 7 C -0.037 4.037 8 C -0.163 4.163 9 C 0.102 3.898 10 C -0.444 4.444 11 H 0.090 0.910 12 C 0.073 3.927 13 N -0.787 5.787 14 Si 0.915 3.085 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.272 1.272 18 C -0.056 4.056 19 C -0.003 4.003 20 C 0.276 3.724 21 N -0.457 5.457 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.155 0.845 26 H 0.112 0.888 27 H 0.288 0.712 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 -3.035 -1.671 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.077 3.923 4 C -0.452 4.452 5 S 0.296 5.704 6 C -0.299 4.299 7 C -0.043 4.043 8 C -0.187 4.187 9 C 0.098 3.902 10 C -0.473 4.473 11 H 0.108 0.892 12 C -0.147 4.147 13 N -0.412 5.412 14 Si 0.738 3.262 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.080 4.080 19 C -0.011 4.011 20 C -0.037 4.037 21 N -0.134 5.134 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.172 0.828 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.277 0.097 -1.520 7.435 hybrid contribution 0.341 -2.173 0.012 2.199 sum -6.936 -2.076 -1.509 7.396 Atomic orbital electron populations 1.22971 0.79231 1.03347 1.00984 1.86089 1.20340 1.26329 1.88940 1.18787 0.91125 0.83885 0.98530 1.24283 1.02858 0.95965 1.22084 1.83528 0.95230 1.07764 1.83834 1.21504 0.94365 0.94794 1.19251 1.18001 0.88532 0.92745 1.05054 1.20939 0.91055 0.96700 1.09962 1.17286 0.91443 0.91915 0.89565 1.19637 0.94388 0.98876 1.34371 0.89203 1.26006 1.00564 0.95766 0.92317 1.69784 1.25021 1.25347 1.21013 0.86130 0.79947 0.80554 0.79525 1.18029 1.19441 1.19727 1.21613 0.98152 0.91583 0.96615 1.15130 0.90764 0.84619 1.10595 1.26032 0.92482 0.92892 0.92339 1.81069 1.09022 1.12032 1.11245 0.93083 0.93101 0.88608 0.82783 0.87003 0.90093 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.92 101.05 1.00 1.35 15 2 O -0.30 -5.16 10.56 -20.29 -0.21 -5.38 15 3 C 0.13 2.53 6.85 -38.43 -0.26 2.27 15 4 C -0.32 -5.46 9.92 28.83 0.29 -5.17 15 5 S 0.04 0.74 22.91 -107.50 -2.46 -1.73 15 6 C -0.18 -3.93 6.37 -37.54 -0.24 -4.17 15 7 C -0.04 -0.80 6.03 -105.34 -0.64 -1.43 15 8 C -0.16 -3.64 9.79 -38.09 -0.37 -4.02 15 9 C 0.10 2.39 5.55 -107.08 -0.59 1.79 15 10 C -0.44 -10.24 9.02 -37.82 -0.34 -10.58 15 11 H 0.09 1.97 7.91 -52.49 -0.41 1.56 15 12 C 0.07 1.61 5.12 -17.35 -0.09 1.53 15 13 N -0.79 -18.17 10.97 55.54 0.61 -17.56 15 14 Si 0.91 16.68 29.60 -169.99 -5.03 11.65 15 15 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 16 H -0.27 -4.90 7.11 56.52 0.40 -4.49 15 17 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 18 C -0.06 -1.30 8.33 -38.61 -0.32 -1.62 15 19 C 0.00 -0.06 5.75 -106.60 -0.61 -0.67 15 20 C 0.28 6.05 15.04 -22.48 -0.34 5.72 15 21 N -0.46 -10.14 18.54 41.84 0.78 -9.37 15 22 H 0.05 0.53 7.83 -51.93 -0.41 0.13 15 23 H 0.05 0.52 7.83 -51.92 -0.41 0.12 15 24 H 0.10 0.85 8.14 -51.94 -0.42 0.43 15 25 H 0.15 2.14 6.88 -52.48 -0.36 1.78 15 26 H 0.11 2.37 8.06 -52.49 -0.42 1.95 15 27 H 0.29 6.05 8.30 -40.82 -0.34 5.71 15 28 H 0.14 3.28 6.16 -52.49 -0.32 2.96 15 LS Contribution 272.70 15.07 4.11 4.11 Total: -1.00 -25.29 272.70 -6.63 -31.91 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.89 Total: 1.37 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.52 Total: -15.01 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 1.38 Total: -26.93 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.21 Total: -5.38 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.46 Total: -1.73 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.29 -6.63 -31.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.503 kcal (2) G-P(sol) polarization free energy of solvation -25.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds