Wall clock time and date at job start Mon Mar 30 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36173 * 116.99852 * 2 1 4 4 C 1.31911 * 122.60083 * 359.97253 * 3 2 1 5 5 S 1.75249 * 111.51434 * 180.02562 * 4 3 2 6 6 C 1.75978 * 92.29631 * 0.02562 * 5 4 3 7 7 C 1.40079 * 109.66667 * 359.97438 * 6 5 4 8 8 C 1.40382 * 119.22988 * 180.02562 * 7 6 5 9 9 C 1.40071 * 120.48287 * 359.97438 * 8 7 6 10 10 C 1.41325 * 119.96007 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99894 * 24.79723 * 10 9 8 12 12 C 1.39824 * 120.00251 * 204.80013 * 10 9 8 13 13 N 1.30911 * 119.99635 * 18.04201 * 12 10 9 14 14 Si 1.86797 * 119.99822 * 198.04877 * 12 10 9 15 15 H 1.48494 * 109.47485 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47003 * 120.00099 * 14 12 10 17 17 H 1.48501 * 109.47038 * 239.99322 * 14 12 10 18 18 C 1.40760 * 120.08187 * 0.02562 * 9 8 7 19 19 C 1.38303 * 119.79060 * 0.02562 * 18 9 8 20 20 C 1.43193 * 119.83480 * 179.97438 * 19 18 9 21 21 N 7.14032 * 129.45483 * 359.97438 * 2 1 3 22 22 H 1.09000 * 109.47077 * 300.00528 * 1 2 3 23 23 H 1.09009 * 109.46939 * 60.00006 * 1 2 3 24 24 H 1.08989 * 109.47544 * 179.97438 * 1 2 3 25 25 H 1.08005 * 124.24252 * 0.02854 * 4 3 2 26 26 H 1.07999 * 119.75995 * 179.97438 * 8 7 6 27 27 H 0.97000 * 119.99960 * 180.02562 * 13 12 10 28 28 H 1.07994 * 120.10706 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 1.3796 2.3511 -0.0005 5 16 2.4606 3.7304 -0.0011 6 6 3.8881 2.7013 -0.0014 7 6 3.4991 1.3556 -0.0004 8 6 4.4857 0.3569 0.0001 9 6 5.8438 0.6997 -0.0009 10 6 6.8277 -0.3148 -0.0009 11 1 6.5940 -1.2938 -0.3925 12 6 8.1038 -0.0511 0.5061 13 7 8.2970 0.9809 1.2881 14 14 9.5329 -1.1713 0.0676 15 1 9.0545 -2.2580 -0.8241 16 1 10.5826 -0.3849 -0.6288 17 1 10.0978 -1.7616 1.3076 18 6 6.2298 2.0533 -0.0018 19 6 5.2640 3.0432 -0.0013 20 6 5.6556 4.4206 -0.0017 21 7 5.9664 5.5132 -0.0025 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0275 -0.0005 25 1 0.3020 2.4234 -0.0006 26 1 4.1954 -0.6834 0.0012 27 1 9.1824 1.1641 1.6396 28 1 7.2768 2.3180 -0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:49 Heat of formation + Delta-G solvation = 11.442388 kcal Electronic energy + Delta-G solvation = -15878.285340 eV Core-core repulsion = 13178.243530 eV Total energy + Delta-G solvation = -2700.041810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75850 -39.39190 -37.48842 -36.12182 -34.14984 -32.22247 -30.09712 -28.37356 -27.37949 -24.42633 -23.77282 -21.55701 -20.38277 -18.54856 -17.95468 -17.54364 -16.88818 -16.61266 -16.58773 -15.87809 -15.23338 -15.04994 -14.78425 -14.11152 -13.90723 -13.78660 -13.72006 -13.33393 -13.14782 -12.78377 -12.59324 -12.36244 -12.28844 -12.05043 -11.82882 -11.43845 -11.43675 -10.91244 -10.00661 -9.35423 -8.78812 -8.34780 -6.37270 -0.05120 0.22547 0.81448 1.23373 1.27077 1.46570 1.60110 1.60673 1.62153 2.13301 2.22082 2.42440 2.65785 3.06487 3.49173 3.82806 4.32534 4.38020 4.46981 4.60670 4.67324 4.77770 4.87080 4.96103 5.19077 5.24133 5.31808 5.47473 5.80560 5.97172 6.34438 6.44747 6.47754 6.70965 6.79976 8.22706 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.007243 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.070100 B = 3864.616693 C = 5166.620591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.119 3.881 4 C -0.298 4.298 5 S 0.057 5.943 6 C -0.200 4.200 7 C -0.049 4.049 8 C -0.172 4.172 9 C 0.083 3.917 10 C -0.470 4.470 11 H 0.093 0.907 12 C 0.039 3.961 13 N -0.819 5.819 14 Si 0.983 3.017 15 H -0.252 1.252 16 H -0.267 1.267 17 H -0.268 1.268 18 C -0.070 4.070 19 C -0.007 4.007 20 C 0.282 3.718 21 N -0.462 5.462 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.193 0.807 26 H 0.115 0.885 27 H 0.294 0.706 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 -3.480 -1.888 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.237 6.237 3 C 0.062 3.938 4 C -0.431 4.431 5 S 0.314 5.686 6 C -0.316 4.316 7 C -0.055 4.055 8 C -0.195 4.195 9 C 0.079 3.921 10 C -0.499 4.499 11 H 0.111 0.889 12 C -0.178 4.178 13 N -0.444 5.444 14 Si 0.804 3.196 15 H -0.176 1.176 16 H -0.192 1.192 17 H -0.193 1.193 18 C -0.094 4.094 19 C -0.015 4.015 20 C -0.031 4.031 21 N -0.139 5.139 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.139 0.861 25 H 0.210 0.790 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.776 -0.345 -1.737 8.953 hybrid contribution 0.611 -2.007 0.090 2.100 sum -8.164 -2.351 -1.647 8.654 Atomic orbital electron populations 1.23371 0.76208 1.05653 1.02286 1.86068 1.23374 1.25343 1.88875 1.18610 0.90071 0.85318 0.99763 1.24638 1.04380 0.94380 1.19744 1.83458 0.93911 1.07805 1.83466 1.21793 0.95099 0.95967 1.18785 1.18354 0.90373 0.92545 1.04274 1.21042 0.91054 0.97237 1.10192 1.17535 0.92236 0.92245 0.90098 1.19882 0.95402 0.99130 1.35497 0.88873 1.26772 1.02461 0.96970 0.91565 1.69828 1.25941 1.26828 1.21797 0.85108 0.76584 0.78661 0.79234 1.17560 1.19166 1.19288 1.21504 0.97841 0.91947 0.98112 1.15179 0.91305 0.84451 1.10582 1.25986 0.92247 0.92766 0.92134 1.81057 1.09215 1.12127 1.11511 0.91754 0.91611 0.86055 0.78951 0.86691 0.89464 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.92 113.37 1.12 1.49 15 2 O -0.32 -10.29 10.56 -95.52 -1.01 -11.30 15 3 C 0.12 4.29 6.85 23.41 0.16 4.45 15 4 C -0.30 -9.31 9.92 66.97 0.66 -8.64 15 5 S 0.06 2.01 22.91 -56.49 -1.29 0.72 15 6 C -0.20 -8.57 6.37 23.59 0.15 -8.42 15 7 C -0.05 -2.09 6.03 -20.33 -0.12 -2.21 15 8 C -0.17 -7.84 9.79 23.24 0.23 -7.61 15 9 C 0.08 4.00 5.55 -21.46 -0.12 3.88 15 10 C -0.47 -22.24 9.02 23.41 0.21 -22.02 15 11 H 0.09 4.18 7.91 -2.91 -0.02 4.16 15 12 C 0.04 1.75 5.12 85.21 0.44 2.18 15 13 N -0.82 -38.64 10.97 21.81 0.24 -38.40 15 14 Si 0.98 34.17 29.60 68.60 2.03 36.20 15 15 H -0.25 -8.50 7.11 99.48 0.71 -7.79 15 16 H -0.27 -9.09 7.11 99.48 0.71 -8.39 15 17 H -0.27 -9.07 7.11 99.48 0.71 -8.37 15 18 C -0.07 -3.37 8.33 22.90 0.19 -3.18 15 19 C -0.01 -0.31 5.75 -21.15 -0.12 -0.43 15 20 C 0.28 12.45 15.04 88.33 1.33 13.77 15 21 N -0.46 -20.44 18.54 19.00 0.35 -20.08 15 22 H 0.06 1.09 7.83 -2.39 -0.02 1.07 15 23 H 0.07 1.09 7.83 -2.38 -0.02 1.07 15 24 H 0.12 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.19 4.43 6.88 -2.91 -0.02 4.41 15 26 H 0.12 4.99 8.06 -2.91 -0.02 4.97 15 27 H 0.29 12.59 8.30 -92.71 -0.77 11.82 15 28 H 0.13 6.31 6.16 -2.91 -0.02 6.29 15 Total: -1.00 -54.31 272.70 5.66 -48.65 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.21 Total: 10.95 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.13 Total: -26.74 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.59 Total: -58.49 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.01 Total: -11.30 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.29 Total: 0.72 kcal Total: -54.31 5.66 -48.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.092 kcal (2) G-P(sol) polarization free energy of solvation -54.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds