Wall clock time and date at job start Mon Mar 30 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35660 * 117.00267 * 2 1 4 4 C 1.40618 * 119.70730 * 89.99869 * 3 2 1 5 5 S 1.76141 * 129.62051 * 0.04788 * 4 3 2 6 6 C 1.75220 * 92.24617 * 179.97438 * 5 4 3 7 7 C 1.31834 * 111.46909 * 0.02562 * 6 5 4 8 8 C 1.40074 * 120.77492 * 180.02562 * 4 3 2 9 9 C 1.40791 * 119.94046 * 0.07078 * 8 4 3 10 10 C 1.39728 * 120.60117 * 359.83838 * 9 8 4 11 11 C 1.40717 * 120.42127 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00123 * 205.12010 * 11 10 9 13 13 C 1.40089 * 119.99504 * 25.12185 * 11 10 9 14 14 N 1.30769 * 120.00315 * 17.62181 * 13 11 10 15 15 Si 1.86808 * 120.00017 * 197.61821 * 13 11 10 16 16 H 1.48498 * 109.46701 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47066 * 119.99953 * 15 13 11 18 18 H 1.48496 * 109.47321 * 240.00246 * 15 13 11 19 19 C 1.39116 * 119.71427 * 269.98456 * 3 2 1 20 20 C 1.43194 * 120.52512 * 359.97438 * 19 3 2 21 21 N 3.52300 * 95.73385 * 281.29406 * 2 1 3 22 22 H 1.09004 * 109.47158 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46985 * 299.99513 * 1 2 3 24 24 H 1.09004 * 109.47153 * 59.99684 * 1 2 3 25 25 H 1.08000 * 124.26990 * 179.97438 * 6 5 4 26 26 H 1.08003 * 122.53001 * 180.02562 * 7 6 5 27 27 H 1.08000 * 119.69473 * 180.02562 * 9 8 4 28 28 H 0.97005 * 120.00182 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 2.3613 1.8296 1.2214 5 16 2.0799 1.2751 2.8694 6 6 2.8126 2.7131 3.5517 7 6 3.2301 3.5354 2.6096 8 6 2.9967 3.0777 1.2475 9 6 3.3242 3.7248 0.0408 10 6 3.0242 3.1320 -1.1885 11 6 3.3538 3.7820 -2.3923 12 1 2.7988 3.5645 -3.2928 13 6 4.4018 4.7111 -2.4224 14 7 5.2859 4.7310 -1.4591 15 14 4.5364 5.9216 -3.8389 16 1 3.4206 5.6942 -4.7919 17 1 4.4631 7.3085 -3.3134 18 1 5.8322 5.7245 -4.5369 19 6 2.3583 1.8230 -1.2082 20 6 2.0364 1.1893 -2.4513 21 7 1.7810 0.6865 -3.4375 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.9092 2.9024 4.6106 26 1 3.7101 4.4771 2.8315 27 1 3.8144 4.6868 0.0655 28 1 6.0118 5.3741 -1.4802 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396209644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:52 Heat of formation + Delta-G solvation = 23.252562 kcal Electronic energy + Delta-G solvation = -16219.474008 eV Core-core repulsion = 13519.944325 eV Total energy + Delta-G solvation = -2699.529682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.01028 -37.06063 -35.64062 -34.72695 -32.84840 -29.60922 -28.82845 -26.52467 -25.94652 -22.94384 -21.62483 -20.19520 -18.27357 -17.37348 -16.79319 -15.72417 -15.45861 -15.01028 -14.88018 -14.00983 -13.52708 -13.02030 -12.95545 -12.78579 -12.25821 -12.20444 -11.84912 -11.64044 -11.58387 -11.50214 -11.34004 -10.94863 -10.46115 -10.33151 -10.09304 -9.85790 -9.47965 -9.38556 -8.49872 -7.61503 -7.22815 -6.94535 -4.76539 1.36693 2.21348 2.40362 2.66841 2.87004 2.89022 2.95025 2.99649 3.64222 3.78945 4.03770 4.17903 4.44747 5.08568 5.23122 5.39106 5.64272 5.67494 5.87950 5.93053 6.19941 6.35763 6.51202 6.54025 6.71117 6.78293 6.95137 7.27154 7.46236 7.57422 7.98356 8.11581 8.32734 8.37341 8.64883 9.67813 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.008456 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.413892 B = 3310.383936 C = 4574.808279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.342 6.342 3 C 0.205 3.795 4 C -0.253 4.253 5 S 0.019 5.981 6 C -0.197 4.197 7 C -0.114 4.114 8 C -0.024 4.024 9 C -0.140 4.140 10 C 0.151 3.849 11 C -0.424 4.424 12 H 0.089 0.911 13 C 0.075 3.925 14 N -0.761 5.761 15 Si 0.917 3.083 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.269 1.269 19 C -0.157 4.157 20 C 0.303 3.697 21 N -0.488 5.488 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.153 0.847 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 1.562 6.545 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.259 6.259 3 C 0.155 3.845 4 C -0.367 4.367 5 S 0.278 5.722 6 C -0.330 4.330 7 C -0.146 4.146 8 C -0.030 4.030 9 C -0.162 4.162 10 C 0.145 3.855 11 C -0.452 4.452 12 H 0.107 0.893 13 C -0.148 4.148 14 N -0.383 5.383 15 Si 0.740 3.260 16 H -0.179 1.179 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.164 4.164 20 C -0.008 4.008 21 N -0.166 5.166 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.170 0.830 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.660 -0.536 5.781 6.863 hybrid contribution 0.879 2.117 -0.647 2.382 sum -2.781 1.581 5.134 6.049 Atomic orbital electron populations 1.22886 0.79591 1.02392 1.00595 1.85892 1.19414 1.26178 1.94426 1.17536 0.94246 0.83607 0.89160 1.21890 1.19086 1.01400 0.94351 1.83557 1.67824 1.22859 0.97999 1.24819 1.06856 0.99089 1.02271 1.21068 1.01874 1.00402 0.91217 1.19107 0.97922 0.92697 0.93278 1.21147 1.05589 1.00996 0.88468 1.17984 0.87493 0.86565 0.93503 1.19697 1.12321 1.16995 0.96205 0.89281 1.26088 0.93960 0.96893 0.97877 1.69764 1.08452 1.29398 1.30674 0.86075 0.79825 0.79520 0.80592 1.17850 1.19005 1.19345 1.17099 1.18098 0.96489 0.84746 1.25310 0.91630 0.91518 0.92297 1.81015 1.13126 1.11144 1.11342 0.89507 0.93463 0.93901 0.82958 0.84819 0.84787 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.13 101.05 1.12 1.78 15 2 O -0.34 -7.05 9.76 -18.68 -0.18 -7.24 15 3 C 0.20 4.55 5.75 -38.36 -0.22 4.32 15 4 C -0.25 -5.39 6.43 -38.00 -0.24 -5.63 15 5 S 0.02 0.34 23.18 -107.50 -2.49 -2.15 15 6 C -0.20 -3.18 11.01 28.84 0.32 -2.86 15 7 C -0.11 -2.03 10.37 -38.55 -0.40 -2.43 15 8 C -0.02 -0.51 6.01 -105.32 -0.63 -1.14 15 9 C -0.14 -3.18 8.74 -38.06 -0.33 -3.52 15 10 C 0.15 3.62 5.71 -104.91 -0.60 3.02 15 11 C -0.42 -10.10 8.55 -37.95 -0.32 -10.43 15 12 H 0.09 2.14 7.38 -52.49 -0.39 1.75 15 13 C 0.07 1.65 5.13 -17.31 -0.09 1.56 15 14 N -0.76 -16.99 10.98 55.56 0.61 -16.38 15 15 Si 0.92 16.67 29.60 -169.99 -5.03 11.64 15 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 17 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 18 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 19 C -0.16 -3.68 5.94 -104.15 -0.62 -4.30 15 20 C 0.30 7.20 13.80 -22.48 -0.31 6.89 15 21 N -0.49 -11.71 18.54 41.84 0.78 -10.93 15 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 25 H 0.15 1.92 8.06 -52.49 -0.42 1.49 15 26 H 0.13 2.05 8.06 -52.48 -0.42 1.63 15 27 H 0.13 3.05 6.14 -52.49 -0.32 2.72 15 28 H 0.29 5.79 8.30 -40.82 -0.34 5.46 15 LS Contribution 274.30 15.07 4.13 4.13 Total: -1.00 -25.85 274.30 -6.47 -32.32 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -1.96 Total: 1.34 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.33 Total: -12.73 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 1.39 Total: -27.31 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.18 Total: -7.24 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.49 Total: -2.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.85 -6.47 -32.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.571 kcal (2) G-P(sol) polarization free energy of solvation -25.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds