Wall clock time and date at job start Mon Mar 30 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35741 * 116.99939 * 2 1 4 4 C 1.37629 * 119.62126 * 359.97438 * 3 2 1 5 5 C 1.40394 * 120.32731 * 180.02562 * 4 3 2 6 6 C 1.40223 * 120.18589 * 180.25140 * 5 4 3 7 7 H 1.07996 * 120.00308 * 153.99674 * 6 5 4 8 8 C 1.40222 * 119.99974 * 333.99521 * 6 5 4 9 9 N 1.30688 * 119.99963 * 342.72937 * 8 6 5 10 10 Si 1.86801 * 120.00013 * 162.72275 * 8 6 5 11 11 H 1.48493 * 109.47212 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46882 * 120.00314 * 10 8 6 13 13 H 1.48506 * 109.47019 * 240.00122 * 10 8 6 14 14 C 1.48031 * 119.63164 * 359.97154 * 5 4 3 15 15 C 1.40073 * 129.05863 * 179.97438 * 14 5 4 16 16 C 1.32700 * 115.81545 * 180.02562 * 15 14 5 17 17 S 1.75524 * 110.61559 * 359.97438 * 16 15 14 18 18 C 1.39431 * 118.25180 * 0.02562 * 14 5 4 19 19 C 1.40326 * 119.61983 * 179.97438 * 3 2 1 20 20 C 1.43199 * 119.49814 * 359.95533 * 19 3 2 21 21 N 3.50135 * 165.08386 * 179.87412 * 2 1 3 22 22 H 1.08996 * 109.47139 * 300.00300 * 1 2 3 23 23 H 1.08995 * 109.46606 * 60.00755 * 1 2 3 24 24 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.83763 * 0.03767 * 4 3 2 26 26 H 0.96996 * 119.99916 * 180.02562 * 9 8 6 27 27 H 1.08002 * 122.09622 * 0.04661 * 15 14 5 28 28 H 1.07998 * 124.69143 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2881 2.3587 -0.0005 5 6 1.9100 3.6174 -0.0011 6 6 1.1356 4.7864 0.0037 7 1 1.5398 5.7002 0.4135 8 6 -0.1635 4.7690 -0.5237 9 7 -0.5362 3.7945 -1.3107 10 14 -1.3615 6.1386 -0.1012 11 1 -0.6994 7.1145 0.8012 12 1 -1.7866 6.8261 -1.3469 13 1 -2.5509 5.5639 0.5776 14 6 3.3878 3.7036 -0.0004 15 6 4.2056 4.8408 -0.0013 16 6 5.5128 4.6126 -0.0009 17 16 5.8390 2.8879 0.0013 18 6 4.1182 2.5159 0.0001 19 6 3.4471 1.2736 0.0005 20 6 4.2084 0.0608 0.0021 21 7 4.8124 -0.9013 0.0020 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2101 2.2920 -0.0003 26 1 -1.4348 3.7827 -1.6758 27 1 3.7978 5.8409 -0.0019 28 1 6.2711 5.3816 -0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210447.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:37 Heat of formation + Delta-G solvation = 19.227038 kcal Electronic energy + Delta-G solvation = -16247.259048 eV Core-core repulsion = 13547.554806 eV Total energy + Delta-G solvation = -2699.704242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.18404 -37.28707 -35.50800 -34.75266 -32.95994 -30.41498 -27.98297 -27.06778 -25.73978 -22.77445 -21.85491 -19.59269 -18.58661 -17.78128 -16.31365 -15.93382 -15.31209 -15.05360 -15.01800 -13.79519 -13.67551 -13.06199 -13.02342 -12.74275 -12.22974 -12.05491 -11.90022 -11.84884 -11.52100 -11.26835 -11.10017 -11.00149 -10.84068 -10.66090 -10.15447 -9.87262 -9.79390 -9.22604 -8.46149 -7.49173 -7.24134 -6.90226 -4.94713 1.81374 2.03988 2.38239 2.72822 2.76452 2.82077 2.87849 3.33553 3.47623 3.78778 3.83836 4.07226 4.43385 5.15915 5.24310 5.65909 5.73428 5.77490 5.98457 6.19805 6.27278 6.42098 6.51150 6.54266 6.66316 6.91047 7.12335 7.37268 7.42042 7.57182 7.84143 8.06481 8.19559 8.40478 8.68902 9.46068 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.009019 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.850003 B = 3103.657265 C = 4534.288946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.225 3.775 4 C -0.287 4.287 5 C 0.187 3.813 6 C -0.401 4.401 7 H 0.097 0.903 8 C 0.071 3.929 9 N -0.744 5.744 10 Si 0.920 3.080 11 H -0.252 1.252 12 H -0.267 1.267 13 H -0.265 1.265 14 C -0.195 4.195 15 C -0.057 4.057 16 C -0.276 4.276 17 S 0.035 5.965 18 C -0.009 4.009 19 C -0.194 4.194 20 C 0.293 3.707 21 N -0.499 5.499 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.139 0.861 26 H 0.294 0.706 27 H 0.130 0.870 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 4.184 1.327 5.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C 0.175 3.825 4 C -0.309 4.309 5 C 0.181 3.819 6 C -0.426 4.426 7 H 0.115 0.885 8 C -0.155 4.155 9 N -0.365 5.365 10 Si 0.742 3.258 11 H -0.176 1.176 12 H -0.192 1.192 13 H -0.190 1.190 14 C -0.202 4.202 15 C -0.086 4.086 16 C -0.409 4.409 17 S 0.296 5.704 18 C -0.128 4.128 19 C -0.207 4.207 20 C -0.017 4.017 21 N -0.179 5.179 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.156 0.844 26 H 0.105 0.895 27 H 0.147 0.853 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.856 1.648 1.165 2.192 hybrid contribution -2.314 1.924 -0.016 3.010 sum -3.170 3.572 1.148 4.912 Atomic orbital electron populations 1.22923 0.78919 1.02266 1.01994 1.85929 1.21075 1.28446 1.88380 1.18320 0.89261 0.83921 0.90980 1.20897 0.99792 0.90143 1.20085 1.18209 0.87566 0.92768 0.83403 1.19899 0.96462 0.97440 1.28833 0.88527 1.26284 0.99113 0.97664 0.92406 1.69762 1.20131 1.29178 1.17412 0.86024 0.79440 0.80356 0.79940 1.17557 1.19201 1.18950 1.19033 0.93905 0.90309 1.16984 1.19664 0.91876 0.98808 0.98264 1.24605 0.99252 0.97227 1.19816 1.83805 1.04493 1.02293 1.79783 1.21888 0.94705 0.95020 1.01150 1.13608 0.87677 0.84736 1.34709 1.25633 0.92292 0.92514 0.91278 1.81009 1.10129 1.11011 1.15722 0.92989 0.92020 0.89622 0.84362 0.89455 0.85263 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.80 101.05 0.99 1.55 15 2 O -0.33 -6.83 9.85 -18.93 -0.19 -7.01 15 3 C 0.23 5.10 6.66 -39.02 -0.26 4.84 15 4 C -0.29 -6.47 7.60 -38.99 -0.30 -6.77 15 5 C 0.19 4.28 5.74 -104.32 -0.60 3.68 15 6 C -0.40 -8.58 8.79 -38.09 -0.33 -8.92 15 7 H 0.10 1.94 7.51 -52.49 -0.39 1.54 15 8 C 0.07 1.41 5.13 -17.29 -0.09 1.32 15 9 N -0.74 -15.35 10.99 55.56 0.61 -14.74 15 10 Si 0.92 14.77 29.60 -169.99 -5.03 9.73 15 11 H -0.25 -4.04 7.11 56.52 0.40 -3.64 15 12 H -0.27 -4.28 7.11 56.52 0.40 -3.88 15 13 H -0.26 -4.21 7.11 56.52 0.40 -3.81 15 14 C -0.20 -4.35 6.02 -104.75 -0.63 -4.98 15 15 C -0.06 -1.11 9.74 -40.78 -0.40 -1.50 15 16 C -0.28 -4.97 11.12 28.85 0.32 -4.65 15 17 S 0.03 0.69 22.98 -107.50 -2.47 -1.78 15 18 C -0.01 -0.21 6.33 -38.01 -0.24 -0.45 15 19 C -0.19 -4.54 5.80 -106.06 -0.62 -5.16 15 20 C 0.29 6.94 14.49 -22.48 -0.33 6.61 15 21 N -0.50 -12.02 18.54 41.83 0.78 -11.24 15 22 H 0.05 0.80 7.63 -51.93 -0.40 0.40 15 23 H 0.06 1.01 7.63 -51.93 -0.40 0.61 15 24 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.14 3.00 4.31 -52.48 -0.23 2.78 15 26 H 0.29 5.34 8.29 -40.82 -0.34 5.00 15 27 H 0.13 2.26 7.71 -52.49 -0.40 1.85 15 28 H 0.15 2.22 8.06 -52.49 -0.42 1.80 15 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -25.55 269.76 -6.51 -32.05 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -1.80 Total: 3.35 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.48 Total: -14.43 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 1.39 Total: -25.98 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.19 Total: -7.01 kcal Atomic # 14 Polarization: 14.77 SS G_CDS: -5.03 Total: 9.73 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.47 Total: -1.78 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.55 -6.51 -32.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210447.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.282 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds