Wall clock time and date at job start Mon Mar 30 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35741 * 116.99939 * 2 1 4 4 C 1.37629 * 119.62126 * 359.97438 * 3 2 1 5 5 C 1.40394 * 120.32731 * 180.02562 * 4 3 2 6 6 C 1.40223 * 120.18589 * 180.25140 * 5 4 3 7 7 H 1.07996 * 120.00308 * 153.99674 * 6 5 4 8 8 C 1.40222 * 119.99974 * 333.99521 * 6 5 4 9 9 N 1.30688 * 119.99963 * 342.72937 * 8 6 5 10 10 Si 1.86801 * 120.00013 * 162.72275 * 8 6 5 11 11 H 1.48493 * 109.47212 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46882 * 120.00314 * 10 8 6 13 13 H 1.48506 * 109.47019 * 240.00122 * 10 8 6 14 14 C 1.48031 * 119.63164 * 359.97154 * 5 4 3 15 15 C 1.40073 * 129.05863 * 179.97438 * 14 5 4 16 16 C 1.32700 * 115.81545 * 180.02562 * 15 14 5 17 17 S 1.75524 * 110.61559 * 359.97438 * 16 15 14 18 18 C 1.39431 * 118.25180 * 0.02562 * 14 5 4 19 19 C 1.40326 * 119.61983 * 179.97438 * 3 2 1 20 20 C 1.43199 * 119.49814 * 359.95533 * 19 3 2 21 21 N 3.50135 * 165.08386 * 179.87412 * 2 1 3 22 22 H 1.08996 * 109.47139 * 300.00300 * 1 2 3 23 23 H 1.08995 * 109.46606 * 60.00755 * 1 2 3 24 24 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.83763 * 0.03767 * 4 3 2 26 26 H 0.96996 * 119.99916 * 180.02562 * 9 8 6 27 27 H 1.08002 * 122.09622 * 0.04661 * 15 14 5 28 28 H 1.07998 * 124.69143 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2881 2.3587 -0.0005 5 6 1.9100 3.6174 -0.0011 6 6 1.1356 4.7864 0.0037 7 1 1.5398 5.7002 0.4135 8 6 -0.1635 4.7690 -0.5237 9 7 -0.5362 3.7945 -1.3107 10 14 -1.3615 6.1386 -0.1012 11 1 -0.6994 7.1145 0.8012 12 1 -1.7866 6.8261 -1.3469 13 1 -2.5509 5.5639 0.5776 14 6 3.3878 3.7036 -0.0004 15 6 4.2056 4.8408 -0.0013 16 6 5.5128 4.6126 -0.0009 17 16 5.8390 2.8879 0.0013 18 6 4.1182 2.5159 0.0001 19 6 3.4471 1.2736 0.0005 20 6 4.2084 0.0608 0.0021 21 7 4.8124 -0.9013 0.0020 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2101 2.2920 -0.0003 26 1 -1.4348 3.7827 -1.6758 27 1 3.7978 5.8409 -0.0019 28 1 6.2711 5.3816 -0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210447.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:37 Heat of formation + Delta-G solvation = 6.793792 kcal Electronic energy + Delta-G solvation = -16247.798194 eV Core-core repulsion = 13547.554806 eV Total energy + Delta-G solvation = -2700.243388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78692 -38.85863 -37.30919 -36.33018 -34.55826 -32.06521 -29.54668 -28.57994 -27.29477 -24.38106 -23.45214 -21.18502 -20.18108 -19.42990 -17.90723 -17.48208 -16.76316 -16.64430 -16.53438 -15.32141 -15.23852 -14.73387 -14.51695 -14.31689 -13.86191 -13.73684 -13.50102 -13.39164 -12.92253 -12.89253 -12.59083 -12.47513 -12.28187 -12.08975 -11.68463 -11.42020 -11.33602 -10.80052 -10.09655 -9.03642 -8.85401 -8.51949 -6.59925 0.23721 0.35939 0.79267 1.34251 1.41594 1.46380 1.61269 1.74417 1.95879 2.13854 2.23194 2.57835 2.72162 3.47767 3.49972 4.27315 4.41290 4.47603 4.61769 4.71797 4.73813 4.85693 4.95150 4.99505 5.03641 5.34837 5.51952 5.77784 5.83813 5.91251 6.23503 6.44527 6.55371 6.73340 6.91641 7.96842 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.009019 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.850003 B = 3103.657265 C = 4534.288946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.343 6.343 3 C 0.218 3.782 4 C -0.300 4.300 5 C 0.158 3.842 6 C -0.407 4.407 7 H 0.108 0.892 8 C 0.038 3.962 9 N -0.766 5.766 10 Si 0.992 3.008 11 H -0.249 1.249 12 H -0.264 1.264 13 H -0.261 1.261 14 C -0.208 4.208 15 C -0.076 4.076 16 C -0.250 4.250 17 S 0.041 5.959 18 C -0.036 4.036 19 C -0.226 4.226 20 C 0.298 3.702 21 N -0.520 5.520 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.120 0.880 25 H 0.141 0.859 26 H 0.306 0.694 27 H 0.151 0.849 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 6.243 1.482 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.256 6.256 3 C 0.168 3.832 4 C -0.322 4.322 5 C 0.151 3.849 6 C -0.432 4.432 7 H 0.126 0.874 8 C -0.186 4.186 9 N -0.386 5.386 10 Si 0.810 3.190 11 H -0.172 1.172 12 H -0.188 1.188 13 H -0.185 1.185 14 C -0.216 4.216 15 C -0.104 4.104 16 C -0.383 4.383 17 S 0.303 5.697 18 C -0.154 4.154 19 C -0.239 4.239 20 C -0.011 4.011 21 N -0.201 5.201 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.138 0.862 25 H 0.158 0.842 26 H 0.118 0.882 27 H 0.168 0.832 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.552 3.681 1.315 4.206 hybrid contribution -2.144 1.370 -0.106 2.547 sum -3.696 5.051 1.209 6.375 Atomic orbital electron populations 1.23182 0.76665 1.04542 1.02016 1.85902 1.23433 1.28002 1.88241 1.18429 0.89342 0.84501 0.90922 1.20939 0.99848 0.90271 1.21115 1.18582 0.88378 0.93495 0.84422 1.20262 0.97348 0.97393 1.28214 0.87377 1.27110 0.99980 0.99784 0.91691 1.69773 1.21213 1.30362 1.17302 0.84971 0.77023 0.77309 0.79658 1.17170 1.18807 1.18497 1.19405 0.94126 0.91274 1.16749 1.19845 0.92180 0.98968 0.99443 1.25071 0.99622 0.96841 1.16786 1.83753 1.02801 1.03891 1.79302 1.22153 0.96326 0.95015 1.01931 1.13830 0.88205 0.84926 1.36923 1.25810 0.91975 0.92493 0.90822 1.80976 1.10672 1.11357 1.17074 0.92397 0.92486 0.86232 0.84157 0.88212 0.83171 0.79331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.80 113.37 1.11 2.09 15 2 O -0.34 -14.66 9.85 -90.65 -0.89 -15.55 15 3 C 0.22 10.17 6.66 22.63 0.15 10.32 15 4 C -0.30 -13.76 7.60 22.65 0.17 -13.59 15 5 C 0.16 7.26 5.74 -19.67 -0.11 7.15 15 6 C -0.41 -17.07 8.79 23.23 0.20 -16.87 15 7 H 0.11 4.15 7.51 -2.91 -0.02 4.13 15 8 C 0.04 1.47 5.13 85.35 0.44 1.91 15 9 N -0.77 -30.96 10.99 21.87 0.24 -30.72 15 10 Si 0.99 28.37 29.60 68.60 2.03 30.40 15 11 H -0.25 -6.94 7.11 99.48 0.71 -6.23 15 12 H -0.26 -7.38 7.11 99.48 0.71 -6.67 15 13 H -0.26 -7.26 7.11 99.48 0.71 -6.55 15 14 C -0.21 -9.25 6.02 -19.95 -0.12 -9.37 15 15 C -0.08 -2.81 9.74 21.54 0.21 -2.60 15 16 C -0.25 -8.36 11.12 66.65 0.74 -7.62 15 17 S 0.04 1.59 22.98 -56.49 -1.30 0.29 15 18 C -0.04 -1.65 6.33 23.28 0.15 -1.50 15 19 C -0.23 -10.86 5.80 -20.80 -0.12 -10.98 15 20 C 0.30 14.48 14.49 88.33 1.28 15.76 15 21 N -0.52 -25.57 18.54 19.00 0.35 -25.22 15 22 H 0.06 1.77 7.63 -2.39 -0.02 1.75 15 23 H 0.06 1.87 7.63 -2.39 -0.02 1.85 15 24 H 0.12 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.14 6.18 4.31 -2.91 -0.01 6.17 15 26 H 0.31 10.74 8.29 -92.71 -0.77 9.97 15 27 H 0.15 4.87 7.71 -2.91 -0.02 4.85 15 28 H 0.19 4.76 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -54.90 269.76 5.75 -49.15 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.22 Total: 16.94 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.10 Total: -25.29 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.59 Total: -55.94 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.89 Total: -15.55 kcal Atomic # 14 Polarization: 28.37 SS G_CDS: 2.03 Total: 30.40 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.30 Total: 0.29 kcal Total: -54.90 5.75 -49.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210447.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.945 kcal (2) G-P(sol) polarization free energy of solvation -54.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds