Wall clock time and date at job start Mon Mar 30 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35539 * 116.99795 * 2 1 4 4 C 1.41470 * 120.06814 * 90.00413 * 3 2 1 5 5 C 1.40912 * 119.83844 * 359.74296 * 4 3 2 6 6 H 1.07998 * 120.00230 * 25.77107 * 5 4 3 7 7 C 1.39891 * 119.99859 * 205.76618 * 5 4 3 8 8 N 1.30907 * 120.00064 * 17.96436 * 7 5 4 9 9 Si 1.86800 * 119.99987 * 197.95443 * 7 5 4 10 10 H 1.48500 * 109.47060 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46859 * 120.00463 * 9 7 5 12 12 H 1.48494 * 109.47626 * 240.00470 * 9 7 5 13 13 C 1.40122 * 120.32245 * 179.71969 * 4 3 2 14 14 C 1.38804 * 121.15872 * 0.02562 * 13 4 3 15 15 S 1.76128 * 130.32970 * 179.97438 * 14 13 4 16 16 C 1.75484 * 91.52078 * 180.02562 * 15 14 13 17 17 C 1.32715 * 110.76124 * 359.97438 * 16 15 14 18 18 C 1.39986 * 115.89152 * 0.02562 * 17 16 15 19 19 C 1.38721 * 120.07014 * 269.72436 * 3 2 1 20 20 C 1.43199 * 120.16797 * 0.29963 * 19 3 2 21 21 N 3.51640 * 95.81931 * 281.35940 * 2 1 3 22 22 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46487 * 299.99825 * 1 2 3 24 24 H 1.09004 * 109.47098 * 59.99601 * 1 2 3 25 25 H 0.96999 * 120.00221 * 179.97438 * 8 7 5 26 26 H 1.08005 * 119.41773 * 180.02562 * 13 4 3 27 27 H 1.08004 * 124.61845 * 180.02562 * 16 15 14 28 28 H 1.08001 * 122.05264 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 2.3662 1.8392 1.2243 5 6 2.0407 1.2121 2.4435 6 1 1.9450 0.1374 2.4893 7 6 1.8415 1.9817 3.5946 8 7 1.6073 3.2655 3.4912 9 14 1.9094 1.1774 5.2792 10 1 2.1876 -0.2730 5.1243 11 1 2.9883 1.8048 6.0841 12 1 0.6070 1.3612 5.9684 13 6 3.0076 3.0850 1.2305 14 6 3.3408 3.7272 0.0460 15 16 4.1371 5.2742 -0.2270 16 6 4.0365 5.0720 -1.9673 17 6 3.4468 3.9233 -2.2741 18 6 3.0398 3.1365 -1.1901 19 6 2.3651 1.8244 -1.2005 20 6 2.0419 1.1913 -2.4436 21 7 1.7856 0.6890 -3.4298 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.4689 3.7991 4.2893 26 1 3.2469 3.5538 2.1737 27 1 4.4050 5.7848 -2.6902 28 1 3.2905 3.6146 -3.2971 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:58 Heat of formation + Delta-G solvation = 16.122514 kcal Electronic energy + Delta-G solvation = -16294.011683 eV Core-core repulsion = 13594.172818 eV Total energy + Delta-G solvation = -2699.838864 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74898 -38.61791 -37.50300 -36.52744 -34.38449 -31.56900 -30.65350 -28.10338 -26.76746 -24.47313 -23.91708 -21.21784 -20.72292 -18.46823 -17.96652 -17.73486 -16.85776 -16.77163 -16.37661 -15.40843 -15.09186 -14.78808 -14.42385 -14.32111 -14.11258 -13.92085 -13.76306 -13.47777 -13.11570 -12.88470 -12.69786 -12.42368 -12.08913 -11.87984 -11.63031 -11.44572 -10.92996 -10.79670 -10.21745 -9.23085 -8.78989 -8.51086 -6.37095 -0.34105 0.34716 0.89364 1.32458 1.33245 1.45377 1.59292 1.65059 1.66835 2.05175 2.19998 2.61416 2.89802 3.02002 3.46526 4.12114 4.40555 4.41946 4.58177 4.63196 4.73049 4.80609 4.90808 5.03074 5.12097 5.25581 5.52586 5.66088 5.76514 5.86692 6.23792 6.43649 6.56218 6.68437 6.87042 8.15950 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.009247 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.039640 B = 3027.277711 C = 4464.552675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.342 6.342 3 C 0.077 3.923 4 C 0.077 3.923 5 C -0.441 4.441 6 H 0.092 0.908 7 C 0.039 3.961 8 N -0.797 5.797 9 Si 0.982 3.018 10 H -0.256 1.256 11 H -0.263 1.263 12 H -0.264 1.264 13 C -0.146 4.146 14 C -0.102 4.102 15 S 0.054 5.946 16 C -0.224 4.224 17 C -0.105 4.105 18 C -0.161 4.161 19 C -0.022 4.022 20 C 0.290 3.710 21 N -0.462 5.462 22 H 0.114 0.886 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.298 0.702 26 H 0.119 0.881 27 H 0.190 0.810 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 1.976 0.315 2.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.258 6.258 3 C 0.029 3.971 4 C 0.070 3.930 5 C -0.469 4.469 6 H 0.110 0.890 7 C -0.180 4.180 8 N -0.420 5.420 9 Si 0.803 3.197 10 H -0.179 1.179 11 H -0.188 1.188 12 H -0.189 1.189 13 C -0.173 4.173 14 C -0.217 4.217 15 S 0.315 5.685 16 C -0.357 4.357 17 C -0.135 4.135 18 C -0.170 4.170 19 C -0.029 4.029 20 C -0.023 4.023 21 N -0.139 5.139 22 H 0.132 0.868 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.208 0.792 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.991 2.421 -0.259 2.628 hybrid contribution -0.744 -0.902 0.147 1.179 sum 0.247 1.518 -0.112 1.542 Atomic orbital electron populations 1.23049 0.78536 1.03923 1.00164 1.85825 1.20791 1.24951 1.94272 1.18719 0.99783 0.87804 0.90805 1.17683 0.91442 0.91852 0.91991 1.19807 1.38825 0.95934 0.92343 0.88987 1.26786 0.91139 0.94986 1.05071 1.69851 1.29824 1.08189 1.34140 0.85120 0.79155 0.79816 0.75645 1.17944 1.18804 1.18898 1.20373 1.03870 0.97993 0.95048 1.22491 1.03953 0.98664 0.96593 1.83679 1.64115 1.18143 1.02597 1.25157 1.10168 1.02530 0.97841 1.19699 1.00603 0.94676 0.98484 1.18468 1.10909 0.94876 0.92745 1.17024 1.06407 0.93960 0.85504 1.25645 0.92300 0.91975 0.92361 1.81062 1.10963 1.10218 1.11665 0.86773 0.93346 0.94904 0.89106 0.86309 0.79238 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 11.13 113.37 1.26 2.56 15 2 O -0.34 -14.59 9.05 -88.44 -0.80 -15.39 15 3 C 0.08 3.51 5.72 23.18 0.13 3.65 15 4 C 0.08 3.70 5.55 -21.37 -0.12 3.58 15 5 C -0.44 -20.55 8.66 23.33 0.20 -20.35 15 6 H 0.09 4.22 7.63 -2.91 -0.02 4.19 15 7 C 0.04 1.70 5.09 85.23 0.43 2.13 15 8 N -0.80 -35.94 11.01 21.82 0.24 -35.70 15 9 Si 0.98 33.04 29.60 68.60 2.03 35.07 15 10 H -0.26 -8.56 7.11 99.48 0.71 -7.85 15 11 H -0.26 -8.63 7.11 99.48 0.71 -7.92 15 12 H -0.26 -8.55 7.11 99.48 0.71 -7.84 15 13 C -0.15 -6.93 8.64 22.86 0.20 -6.73 15 14 C -0.10 -4.44 6.45 22.90 0.15 -4.29 15 15 S 0.05 1.89 23.30 -56.49 -1.32 0.58 15 16 C -0.22 -7.02 11.10 66.65 0.74 -6.28 15 17 C -0.10 -3.75 9.76 21.52 0.21 -3.54 15 18 C -0.16 -6.82 6.02 -19.91 -0.12 -6.94 15 19 C -0.02 -0.98 5.95 -19.46 -0.12 -1.10 15 20 C 0.29 12.11 14.55 88.33 1.29 13.39 15 21 N -0.46 -19.19 18.54 19.00 0.35 -18.84 15 22 H 0.11 3.16 8.14 -2.39 -0.02 3.14 15 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.30 12.00 8.30 -92.71 -0.77 11.23 15 26 H 0.12 5.81 6.14 -2.91 -0.02 5.79 15 27 H 0.19 4.41 8.06 -2.91 -0.02 4.39 15 28 H 0.14 4.38 8.01 -2.91 -0.02 4.36 15 Total: -1.00 -51.87 274.02 5.97 -45.90 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.21 Total: 12.31 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.26 Total: -23.92 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.59 Total: -54.54 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.80 Total: -15.39 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.58 kcal Total: -51.87 5.97 -45.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.024 kcal (2) G-P(sol) polarization free energy of solvation -51.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds