Wall clock time and date at job start Mon Mar 30 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39827 * 119.47980 * 185.55076 * 3 2 1 5 5 C 1.35994 * 121.05715 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.75626 * 179.97438 * 5 4 3 7 7 O 1.42910 * 109.46888 * 1.74419 * 6 5 4 8 8 C 1.40667 * 120.49196 * 0.23201 * 5 4 3 9 9 C 1.40176 * 120.25372 * 179.74857 * 8 5 4 10 10 H 1.08005 * 120.00053 * 39.85478 * 9 8 5 11 11 C 1.40278 * 119.99653 * 219.85304 * 9 8 5 12 12 N 1.30653 * 120.00118 * 19.65829 * 11 9 8 13 13 Si 1.86804 * 119.99650 * 199.65776 * 11 9 8 14 14 H 1.48493 * 109.47346 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47079 * 120.00362 * 13 11 9 16 16 H 1.48504 * 109.47066 * 239.99847 * 13 11 9 17 17 C 1.47930 * 119.48429 * 359.52787 * 8 5 4 18 18 C 1.40018 * 129.25860 * 180.19529 * 17 8 5 19 19 C 1.32718 * 115.79946 * 180.27712 * 18 17 8 20 20 S 1.75526 * 110.63818 * 359.97438 * 19 18 17 21 21 C 1.39540 * 118.04314 * 0.48266 * 17 8 5 22 22 H 1.07998 * 119.47781 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.47376 * 241.74264 * 6 5 4 24 24 H 1.08997 * 109.47468 * 121.73989 * 6 5 4 25 25 H 0.96696 * 113.99676 * 179.97438 * 7 6 5 26 26 H 0.97004 * 119.99803 * 174.39226 * 12 11 9 27 27 H 1.07995 * 122.10107 * 0.25197 * 18 17 8 28 28 H 1.08003 * 124.68130 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2556 1.2125 0.1177 5 6 4.6150 1.2504 0.1208 6 6 5.3260 2.5729 0.2488 7 8 4.3633 3.6194 0.3918 8 6 5.3624 0.0648 0.0001 9 6 6.7634 0.1103 -0.0014 10 1 7.2826 0.7828 0.6654 11 6 7.4910 -0.7178 -0.8690 12 7 6.9101 -1.2350 -1.9188 13 14 9.2904 -1.0811 -0.5232 14 1 9.7072 -0.3807 0.7181 15 1 9.4759 -2.5444 -0.3514 16 1 10.1186 -0.6074 -1.6612 17 6 4.6583 -1.2306 -0.1203 18 6 5.1901 -2.5198 -0.2458 19 6 4.3042 -3.5033 -0.3414 20 16 2.6681 -2.8705 -0.2790 21 6 3.2630 -1.2215 -0.1193 22 1 2.6982 2.1332 0.2077 23 1 5.9260 2.7507 -0.6437 24 1 5.9744 2.5536 1.1246 25 1 4.7509 4.5009 0.4799 26 1 7.4316 -1.7403 -2.5620 27 1 6.2544 -2.7023 -0.2640 28 1 4.5552 -4.5489 -0.4427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211580.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:33 Heat of formation + Delta-G solvation = -4.376686 kcal Electronic energy + Delta-G solvation = -16288.041950 eV Core-core repulsion = 13587.314173 eV Total energy + Delta-G solvation = -2700.727776 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25657 -37.70836 -37.50375 -35.76005 -35.45651 -32.46269 -30.31083 -27.77802 -26.56653 -23.88512 -23.77684 -20.40393 -19.78381 -19.25785 -18.23799 -17.41760 -16.47125 -16.14157 -15.66470 -15.60115 -15.26658 -14.78795 -14.68500 -14.23401 -13.88267 -13.67975 -13.50198 -13.28992 -12.99471 -12.89150 -12.52642 -12.26507 -12.02883 -11.85268 -11.69533 -11.24179 -10.95253 -10.82405 -9.92224 -9.06607 -8.93041 -8.41099 -6.52616 0.14850 0.36974 0.87945 1.32619 1.40522 1.47732 1.61008 1.72137 1.87744 2.15688 2.30304 2.72449 3.40571 3.42829 3.60706 4.28424 4.44190 4.57300 4.70158 4.84305 4.88200 4.95956 5.05463 5.14569 5.36307 5.47349 5.75408 5.82733 5.86832 6.07706 6.27771 6.59496 6.66101 6.79430 7.16351 8.07381 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.010047 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.912801 B = 2786.257351 C = 4269.564357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.290 3.710 3 C -0.190 4.190 4 C 0.021 3.979 5 C -0.231 4.231 6 C 0.156 3.844 7 O -0.590 6.590 8 C 0.163 3.837 9 C -0.436 4.436 10 H 0.114 0.886 11 C 0.048 3.952 12 N -0.771 5.771 13 Si 0.976 3.024 14 H -0.248 1.248 15 H -0.265 1.265 16 H -0.265 1.265 17 C -0.159 4.159 18 C -0.048 4.048 19 C -0.259 4.259 20 S 0.026 5.974 21 C -0.063 4.063 22 H 0.123 0.877 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.395 0.605 26 H 0.303 0.697 27 H 0.131 0.869 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.887 1.027 1.829 8.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.019 4.019 3 C -0.201 4.201 4 C -0.002 4.002 5 C -0.234 4.234 6 C 0.079 3.921 7 O -0.398 6.398 8 C 0.157 3.843 9 C -0.462 4.462 10 H 0.132 0.868 11 C -0.176 4.176 12 N -0.391 5.391 13 Si 0.795 3.205 14 H -0.171 1.171 15 H -0.189 1.189 16 H -0.189 1.189 17 C -0.167 4.167 18 C -0.076 4.076 19 C -0.392 4.392 20 S 0.287 5.713 21 C -0.181 4.181 22 H 0.140 0.860 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.245 0.755 26 H 0.115 0.885 27 H 0.148 0.852 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.343 -0.435 1.515 4.620 hybrid contribution 2.561 0.732 -0.167 2.669 sum 6.904 0.297 1.347 7.041 Atomic orbital electron populations 1.81034 1.12695 1.09314 1.16212 1.26077 0.92888 0.91946 0.90982 1.14716 0.82671 0.92932 1.29828 1.20037 0.94312 0.94247 0.91558 1.19290 0.92872 0.94340 1.16896 1.20385 0.88640 0.83497 0.99550 1.86381 1.37269 1.19413 1.96756 1.18525 0.93380 0.88060 0.84326 1.20088 0.91036 1.18044 1.17023 0.86804 1.26861 1.05676 0.91590 0.93489 1.69779 1.41067 1.21294 1.07000 0.85215 0.75425 0.79497 0.80321 1.17052 1.18925 1.18922 1.19206 0.90044 0.94468 1.12963 1.19759 1.00107 0.90664 0.97120 1.25036 0.93583 1.03319 1.17269 1.83631 1.10032 0.98267 1.79349 1.22527 0.96761 0.95286 1.03496 0.85963 0.93031 0.92364 0.75503 0.88541 0.85163 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.93 18.54 19.00 0.35 -23.58 15 2 C 0.29 13.34 15.01 88.33 1.33 14.67 15 3 C -0.19 -8.71 5.78 -20.95 -0.12 -8.83 15 4 C 0.02 0.91 8.94 22.13 0.20 1.11 15 5 C -0.23 -9.74 5.88 -19.79 -0.12 -9.86 15 6 C 0.16 5.25 6.38 71.23 0.45 5.70 15 7 O -0.59 -17.82 12.07 -148.98 -1.80 -19.62 15 8 C 0.16 7.31 5.49 -19.65 -0.11 7.20 15 9 C -0.44 -17.82 8.08 23.24 0.19 -17.63 15 10 H 0.11 4.20 7.35 -2.91 -0.02 4.18 15 11 C 0.05 1.83 3.86 85.36 0.33 2.16 15 12 N -0.77 -32.18 10.83 21.88 0.24 -31.94 15 13 Si 0.98 28.83 29.61 68.60 2.03 30.86 15 14 H -0.25 -7.05 7.11 99.48 0.71 -6.34 15 15 H -0.26 -7.79 7.11 99.48 0.71 -7.08 15 16 H -0.26 -7.65 7.11 99.48 0.71 -6.94 15 17 C -0.16 -7.32 5.50 -19.96 -0.11 -7.43 15 18 C -0.05 -2.01 8.26 21.53 0.18 -1.83 15 19 C -0.26 -9.88 11.11 66.65 0.74 -9.14 15 20 S 0.03 1.07 22.98 -56.49 -1.30 -0.23 15 21 C -0.06 -2.90 6.33 23.29 0.15 -2.75 15 22 H 0.12 5.06 6.89 -2.91 -0.02 5.04 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.06 1.77 7.76 -2.39 -0.02 1.75 15 25 H 0.40 7.25 9.12 -74.06 -0.68 6.57 15 26 H 0.30 11.31 8.30 -92.70 -0.77 10.54 15 27 H 0.13 5.33 6.12 -2.91 -0.02 5.31 15 28 H 0.18 5.49 8.06 -2.91 -0.02 5.47 15 Total: -1.00 -54.13 267.73 3.19 -50.95 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.56 Total: 20.18 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 3.11 Total: -26.61 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.59 Total: -55.52 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.80 Total: -19.62 kcal Atomic # 14 Polarization: 28.83 SS G_CDS: 2.03 Total: 30.86 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.30 Total: -0.23 kcal Total: -54.13 3.19 -50.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211580.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.570 kcal (2) G-P(sol) polarization free energy of solvation -54.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds