Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.38880 * 123.26808 * 304.96276 * 3 2 1 5 5 C 1.39155 * 124.64870 * 0.02562 * 4 3 2 6 6 H 1.08000 * 119.99419 * 359.72540 * 5 4 3 7 7 C 1.40629 * 120.00025 * 179.44487 * 5 4 3 8 8 N 1.30487 * 120.00198 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00113 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47048 * 120.00073 * 9 7 5 12 12 H 1.48501 * 109.47100 * 240.00522 * 9 7 5 13 13 S 1.75201 * 110.70343 * 179.74229 * 4 3 2 14 14 C 1.75841 * 92.73432 * 0.26566 * 13 4 3 15 15 C 1.39936 * 129.76944 * 180.02562 * 14 13 4 16 16 C 1.37566 * 120.35160 * 179.97438 * 15 14 13 17 17 C 1.38912 * 120.22619 * 0.02562 * 16 15 14 18 18 C 1.36055 * 120.48081 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.74466 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47250 * 0.02562 * 19 18 17 21 21 C 1.39850 * 110.73427 * 0.02562 * 14 13 4 22 22 H 0.96995 * 120.00179 * 179.97438 * 8 7 5 23 23 H 1.07999 * 119.82726 * 359.92960 * 15 14 13 24 24 H 1.07995 * 119.89150 * 179.97438 * 16 15 14 25 25 H 1.08005 * 119.75735 * 180.02562 * 17 16 15 26 26 H 1.09006 * 109.47310 * 120.00349 * 19 18 17 27 27 H 1.09002 * 109.47524 * 240.00392 * 19 18 17 28 28 H 0.96698 * 114.00054 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3301 -0.6644 0.9516 5 6 2.8073 -1.4040 2.0081 6 1 1.7376 -1.4864 2.1322 7 6 3.6717 -2.0490 2.9105 8 7 4.9641 -1.9536 2.7576 9 14 2.9699 -3.0424 4.3283 10 1 1.4865 -2.9945 4.2797 11 1 3.4231 -4.4521 4.2170 12 1 3.4421 -2.4706 5.6149 13 16 5.0401 -0.4513 0.6351 14 6 4.7394 0.5455 -0.7820 15 6 5.6461 1.1544 -1.6568 16 6 5.1923 1.9021 -2.7187 17 6 3.8286 2.0593 -2.9311 18 6 2.9280 1.4768 -2.0939 19 6 1.4524 1.6588 -2.3396 20 8 1.2591 2.4731 -3.4979 21 6 3.3661 0.7028 -0.9944 22 1 5.5603 -2.3981 3.3802 23 1 6.7078 1.0374 -1.4971 24 1 5.8986 2.3691 -3.3890 25 1 3.4806 2.6476 -3.7674 26 1 0.9877 0.6856 -2.4984 27 1 0.9969 2.1421 -1.4752 28 1 0.3307 2.6320 -3.7165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211618.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = -15.638386 kcal Electronic energy + Delta-G solvation = -16041.521027 eV Core-core repulsion = 13340.304906 eV Total energy + Delta-G solvation = -2701.216120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.73428 -36.24095 -35.79323 -34.74423 -33.02276 -30.78985 -29.42399 -26.35256 -25.08815 -22.82600 -20.95772 -20.63641 -18.20913 -17.01472 -16.34472 -15.98817 -15.46076 -14.52510 -14.39830 -14.18369 -13.52343 -13.30890 -12.87456 -12.81684 -12.15682 -11.97204 -11.87514 -11.79446 -11.58774 -11.37557 -11.14225 -10.68762 -10.56138 -10.25086 -10.01332 -9.93421 -9.49468 -9.38526 -8.36517 -7.72445 -7.54549 -6.56497 -5.13198 1.87797 2.23180 2.51952 2.69249 2.79224 2.94046 2.96488 3.33787 3.50212 4.06497 4.16160 4.43347 4.64697 5.03134 5.53369 5.70321 5.72558 5.88702 5.97897 6.00924 6.19005 6.29646 6.49409 6.72338 6.86449 7.03879 7.24099 7.27865 7.40089 7.53038 7.75245 7.88946 7.96383 8.01391 8.96517 9.24087 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.007515 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.022499 B = 3725.222789 C = 4788.086969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C 0.323 3.677 3 C -0.306 4.306 4 C 0.081 3.919 5 C -0.350 4.350 6 H 0.105 0.895 7 C 0.055 3.945 8 N -0.747 5.747 9 Si 0.941 3.059 10 H -0.251 1.251 11 H -0.262 1.262 12 H -0.262 1.262 13 S 0.165 5.835 14 C -0.241 4.241 15 C -0.060 4.060 16 C -0.177 4.177 17 C -0.084 4.084 18 C -0.118 4.118 19 C 0.128 3.872 20 O -0.573 6.573 21 C 0.046 3.954 22 H 0.310 0.690 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 0.838 -1.162 3.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.217 5.217 2 C 0.015 3.985 3 C -0.318 4.318 4 C -0.041 4.041 5 C -0.383 4.383 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.371 5.371 9 Si 0.762 3.238 10 H -0.174 1.174 11 H -0.187 1.187 12 H -0.187 1.187 13 S 0.426 5.574 14 C -0.355 4.355 15 C -0.082 4.082 16 C -0.198 4.198 17 C -0.104 4.104 18 C -0.120 4.120 19 C 0.051 3.949 20 O -0.377 6.377 21 C 0.038 3.962 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.137 0.863 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.286 0.272 -0.376 3.318 hybrid contribution -1.608 0.088 -0.109 1.615 sum 1.677 0.360 -0.485 1.782 Atomic orbital electron populations 1.81039 1.12275 1.15696 1.12696 1.25062 0.91823 0.90653 0.90985 1.15321 0.84149 1.24647 1.07639 1.21288 0.95381 0.93426 0.94043 1.19585 0.96397 1.18728 1.03633 0.87684 1.26533 0.94376 0.96009 1.00244 1.68474 1.04150 1.30885 1.33609 0.85638 0.81070 0.78877 0.78172 1.17441 1.18660 1.18651 1.84839 1.03563 1.49711 1.19308 1.23502 0.95863 1.09914 1.06214 1.20316 0.97389 0.96623 0.93875 1.20633 0.95184 1.04126 0.99833 1.20214 0.92443 0.99051 0.98725 1.19062 0.93457 1.02385 0.97077 1.20820 0.94252 0.93223 0.86633 1.86397 1.30476 1.73096 1.47775 1.18279 0.91470 0.94072 0.92401 0.87620 0.87314 0.87214 0.86347 0.93181 0.93185 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -12.93 18.54 41.84 0.78 -12.15 15 2 C 0.32 7.78 11.84 -22.47 -0.27 7.52 15 3 C -0.31 -7.37 5.95 -104.82 -0.62 -8.00 15 4 C 0.08 1.94 6.13 -39.00 -0.24 1.70 15 5 C -0.35 -8.00 8.92 -38.34 -0.34 -8.34 15 6 H 0.11 2.42 7.37 -52.49 -0.39 2.03 15 7 C 0.05 1.11 5.51 -17.22 -0.09 1.02 15 8 N -0.75 -15.23 10.54 55.58 0.59 -14.64 15 9 Si 0.94 15.42 29.57 -169.99 -5.03 10.39 15 10 H -0.25 -4.26 7.11 56.52 0.40 -3.86 15 11 H -0.26 -4.18 7.11 56.52 0.40 -3.78 15 12 H -0.26 -4.17 7.11 56.52 0.40 -3.77 15 13 S 0.17 3.62 20.00 -107.50 -2.15 1.47 15 14 C -0.24 -5.28 6.43 -38.34 -0.25 -5.53 15 15 C -0.06 -1.15 10.07 -39.19 -0.39 -1.54 15 16 C -0.18 -3.24 10.03 -39.58 -0.40 -3.64 15 17 C -0.08 -1.65 9.30 -40.12 -0.37 -2.03 15 18 C -0.12 -2.53 5.91 -104.19 -0.62 -3.15 15 19 C 0.13 2.51 5.84 36.00 0.21 2.72 15 20 O -0.57 -9.63 12.08 -35.23 -0.43 -10.05 15 21 C 0.05 1.07 5.98 -105.16 -0.63 0.44 15 22 H 0.31 5.49 8.29 -40.82 -0.34 5.15 15 23 H 0.11 1.81 8.06 -52.49 -0.42 1.39 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.12 2.17 6.91 -52.48 -0.36 1.81 15 26 H 0.05 1.02 7.51 -51.93 -0.39 0.63 15 27 H 0.05 1.02 7.54 -51.93 -0.39 0.63 15 28 H 0.37 4.40 9.12 45.56 0.42 4.81 15 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -26.19 266.81 -7.33 -33.52 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.10 Total: 6.28 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -4.01 Total: -18.83 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 1.36 Total: -26.80 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.43 Total: -10.05 kcal Atomic # 14 Polarization: 15.42 SS G_CDS: -5.03 Total: 10.39 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.15 Total: 1.47 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.19 -7.33 -33.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211618.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.880 kcal (2) G-P(sol) polarization free energy of solvation -26.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds