Wall clock time and date at job start Mon Mar 30 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39547 * 119.63560 * 129.82717 * 3 2 1 5 5 C 1.39239 * 121.33587 * 180.02562 * 4 3 2 6 6 S 1.76097 * 130.45998 * 180.32386 * 5 4 3 7 7 C 1.75500 * 91.50326 * 180.02562 * 6 5 4 8 8 C 1.32834 * 110.67171 * 359.70111 * 7 6 5 9 9 C 1.50703 * 122.07241 * 180.24430 * 8 7 6 10 10 O 1.42900 * 109.47223 * 359.97438 * 9 8 7 11 11 C 1.39838 * 115.85363 * 0.22721 * 8 7 6 12 12 C 1.47946 * 129.01745 * 180.02562 * 11 8 7 13 13 C 1.40668 * 120.30490 * 0.02562 * 12 11 8 14 14 H 1.08008 * 119.99535 * 32.17019 * 13 12 11 15 15 C 1.39971 * 120.00566 * 212.16814 * 13 12 11 16 16 N 1.30848 * 120.00183 * 10.12985 * 15 13 12 17 17 Si 1.86799 * 120.00059 * 190.13156 * 15 13 12 18 18 H 1.48500 * 109.47163 * 59.99842 * 17 15 13 19 19 H 1.48502 * 109.46945 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47086 * 299.99864 * 17 15 13 21 21 C 1.39137 * 119.63834 * 309.83934 * 3 2 1 22 22 H 1.08004 * 119.33466 * 0.02562 * 4 3 2 23 23 H 1.08002 * 124.66749 * 179.97438 * 7 6 5 24 24 H 1.09010 * 109.46732 * 119.97952 * 9 8 7 25 25 H 1.08995 * 109.47714 * 239.97292 * 9 8 7 26 26 H 0.96695 * 113.99755 * 179.97438 * 10 9 8 27 27 H 0.96988 * 120.00425 * 180.02562 * 16 15 13 28 28 H 1.08003 * 120.00493 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2577 0.7778 -0.9315 5 6 4.6495 0.8045 -0.9636 6 16 5.7516 1.6901 -2.0133 7 6 7.1487 1.0043 -1.2024 8 6 6.7700 0.1880 -0.2254 9 6 7.7658 -0.5368 0.6430 10 8 9.0918 -0.1954 0.2341 11 6 5.3899 0.0433 -0.0523 12 6 4.6562 -0.7801 0.9339 13 6 5.3587 -1.5605 1.8699 14 1 6.3141 -1.2240 2.2449 15 6 4.8198 -2.7730 2.3154 16 7 3.7685 -3.2787 1.7229 17 14 5.6013 -3.6693 3.7560 18 1 5.5673 -2.7983 4.9583 19 1 4.8481 -4.9197 4.0285 20 1 7.0103 -4.0027 3.4261 21 6 3.2565 -0.7738 0.9286 22 1 2.7007 1.3706 -1.6420 23 1 8.1753 1.2200 -1.4593 24 1 7.6200 -0.2460 1.6834 25 1 7.6203 -1.6124 0.5427 26 1 9.7860 -0.6265 0.7511 27 1 3.3948 -4.1187 2.0318 28 1 2.7109 -1.3714 1.6439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211678.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:16 Heat of formation + Delta-G solvation = 10.502418 kcal Electronic energy + Delta-G solvation = -16132.539290 eV Core-core repulsion = 13432.456720 eV Total energy + Delta-G solvation = -2700.082570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.71737 -36.80810 -35.74677 -34.51781 -33.57589 -30.26497 -28.88363 -26.55923 -25.35964 -22.87622 -21.46423 -19.27810 -18.41882 -17.37525 -16.44717 -15.72902 -15.28468 -14.68700 -14.47383 -14.38004 -13.46275 -13.25388 -13.19470 -12.78907 -12.24930 -12.02156 -11.94498 -11.83522 -11.59171 -11.43812 -11.12043 -10.82601 -10.34352 -10.28362 -10.14023 -9.72770 -9.71169 -9.43865 -8.35162 -7.52400 -7.18691 -6.91647 -4.74366 1.37463 2.41725 2.45047 2.80520 2.84647 2.86098 2.88620 2.98062 3.41073 3.60041 3.82942 4.34756 4.65519 4.82023 5.14352 5.72549 5.89440 5.99580 6.11064 6.17558 6.34343 6.53117 6.65870 6.71835 6.85207 7.07782 7.37391 7.41436 7.45796 7.62090 7.96005 8.04046 8.22623 8.32096 8.36915 9.73151 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.011139 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.079050 B = 2513.113735 C = 4541.441019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.281 3.719 3 C 0.014 3.986 4 C -0.177 4.177 5 C -0.076 4.076 6 S 0.012 5.988 7 C -0.233 4.233 8 C -0.044 4.044 9 C 0.135 3.865 10 O -0.580 6.580 11 C -0.156 4.156 12 C 0.151 3.849 13 C -0.436 4.436 14 H 0.095 0.905 15 C 0.071 3.929 16 N -0.773 5.773 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.261 1.261 21 C -0.131 4.131 22 H 0.104 0.896 23 H 0.156 0.844 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.375 0.625 27 H 0.291 0.709 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 1.076 0.969 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.032 4.032 3 C 0.008 3.992 4 C -0.205 4.205 5 C -0.191 4.191 6 S 0.275 5.725 7 C -0.366 4.366 8 C -0.055 4.055 9 C 0.056 3.944 10 O -0.385 6.385 11 C -0.163 4.163 12 C 0.145 3.855 13 C -0.464 4.464 14 H 0.113 0.887 15 C -0.151 4.151 16 N -0.395 5.395 17 Si 0.740 3.260 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.185 1.185 21 C -0.156 4.156 22 H 0.122 0.878 23 H 0.174 0.826 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.220 0.780 27 H 0.103 0.897 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.917 2.254 -0.703 5.454 hybrid contribution 1.120 -1.827 2.013 2.940 sum 6.037 0.427 1.310 6.192 Atomic orbital electron populations 1.81080 1.12545 1.10544 1.10037 1.26187 0.93115 0.91920 0.92024 1.15666 0.82773 1.01233 0.99510 1.19336 0.90547 1.06936 1.03681 1.21908 0.96443 1.01443 0.99327 1.83600 0.97542 1.51650 1.39717 1.24474 1.00654 1.07481 1.04023 1.18253 0.92638 0.97805 0.96839 1.20993 0.79555 0.98050 0.95851 1.86411 1.16140 1.73300 1.62613 1.19012 0.90698 1.06739 0.99884 1.18206 0.90646 0.88125 0.88494 1.19786 1.05698 1.02195 1.18691 0.88708 1.26073 0.94391 0.97684 0.96952 1.69743 1.17699 1.17516 1.34571 0.86183 0.80148 0.78862 0.80805 1.18291 1.19842 1.18496 1.21087 0.93830 1.00772 0.99895 0.87828 0.82630 0.91893 0.91267 0.77956 0.89725 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.03 18.54 41.84 0.78 -9.25 15 2 C 0.28 5.92 15.28 -22.47 -0.34 5.58 15 3 C 0.01 0.31 5.71 -107.15 -0.61 -0.30 15 4 C -0.18 -3.69 9.70 -38.72 -0.38 -4.06 15 5 C -0.08 -1.63 6.47 -38.58 -0.25 -1.88 15 6 S 0.01 0.22 23.30 -107.50 -2.50 -2.28 15 7 C -0.23 -4.45 10.34 28.87 0.30 -4.15 15 8 C -0.04 -0.89 5.81 -105.88 -0.62 -1.50 15 9 C 0.13 2.33 5.66 36.01 0.20 2.53 15 10 O -0.58 -8.74 12.46 -35.23 -0.44 -9.18 15 11 C -0.16 -3.45 6.02 -104.69 -0.63 -4.08 15 12 C 0.15 3.43 5.69 -104.35 -0.59 2.84 15 13 C -0.44 -9.42 7.72 -38.02 -0.29 -9.71 15 14 H 0.10 1.88 4.95 -52.48 -0.26 1.62 15 15 C 0.07 1.48 5.23 -17.32 -0.09 1.39 15 16 N -0.77 -17.15 11.04 55.55 0.61 -16.53 15 17 Si 0.92 15.62 29.57 -169.99 -5.03 10.59 15 18 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 19 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 20 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 21 C -0.13 -2.98 8.28 -38.60 -0.32 -3.30 15 22 H 0.10 1.97 8.06 -52.48 -0.42 1.54 15 23 H 0.16 2.76 7.41 -52.49 -0.39 2.37 15 24 H 0.06 1.04 6.57 -51.92 -0.34 0.70 15 25 H 0.07 1.22 7.58 -51.93 -0.39 0.82 15 26 H 0.37 3.66 9.12 45.56 0.42 4.07 15 27 H 0.29 5.92 8.30 -40.82 -0.34 5.58 15 28 H 0.13 3.04 6.44 -52.48 -0.34 2.70 15 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -25.01 266.55 -7.05 -32.05 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -0.86 Total: 7.24 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.62 Total: -16.65 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 1.39 Total: -25.79 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.44 Total: -9.18 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: -5.03 Total: 10.59 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.50 Total: -2.28 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -25.01 -7.05 -32.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211678.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.557 kcal (2) G-P(sol) polarization free energy of solvation -25.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds