Wall clock time and date at job start Mon Mar 30 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39547 * 119.63560 * 129.82717 * 3 2 1 5 5 C 1.39239 * 121.33587 * 180.02562 * 4 3 2 6 6 S 1.76097 * 130.45998 * 180.32386 * 5 4 3 7 7 C 1.75500 * 91.50326 * 180.02562 * 6 5 4 8 8 C 1.32834 * 110.67171 * 359.70111 * 7 6 5 9 9 C 1.50703 * 122.07241 * 180.24430 * 8 7 6 10 10 O 1.42900 * 109.47223 * 359.97438 * 9 8 7 11 11 C 1.39838 * 115.85363 * 0.22721 * 8 7 6 12 12 C 1.47946 * 129.01745 * 180.02562 * 11 8 7 13 13 C 1.40668 * 120.30490 * 0.02562 * 12 11 8 14 14 H 1.08008 * 119.99535 * 32.17019 * 13 12 11 15 15 C 1.39971 * 120.00566 * 212.16814 * 13 12 11 16 16 N 1.30848 * 120.00183 * 10.12985 * 15 13 12 17 17 Si 1.86799 * 120.00059 * 190.13156 * 15 13 12 18 18 H 1.48500 * 109.47163 * 59.99842 * 17 15 13 19 19 H 1.48502 * 109.46945 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47086 * 299.99864 * 17 15 13 21 21 C 1.39137 * 119.63834 * 309.83934 * 3 2 1 22 22 H 1.08004 * 119.33466 * 0.02562 * 4 3 2 23 23 H 1.08002 * 124.66749 * 179.97438 * 7 6 5 24 24 H 1.09010 * 109.46732 * 119.97952 * 9 8 7 25 25 H 1.08995 * 109.47714 * 239.97292 * 9 8 7 26 26 H 0.96695 * 113.99755 * 179.97438 * 10 9 8 27 27 H 0.96988 * 120.00425 * 180.02562 * 16 15 13 28 28 H 1.08003 * 120.00493 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2577 0.7778 -0.9315 5 6 4.6495 0.8045 -0.9636 6 16 5.7516 1.6901 -2.0133 7 6 7.1487 1.0043 -1.2024 8 6 6.7700 0.1880 -0.2254 9 6 7.7658 -0.5368 0.6430 10 8 9.0918 -0.1954 0.2341 11 6 5.3899 0.0433 -0.0523 12 6 4.6562 -0.7801 0.9339 13 6 5.3587 -1.5605 1.8699 14 1 6.3141 -1.2240 2.2449 15 6 4.8198 -2.7730 2.3154 16 7 3.7685 -3.2787 1.7229 17 14 5.6013 -3.6693 3.7560 18 1 5.5673 -2.7983 4.9583 19 1 4.8481 -4.9197 4.0285 20 1 7.0103 -4.0027 3.4261 21 6 3.2565 -0.7738 0.9286 22 1 2.7007 1.3706 -1.6420 23 1 8.1753 1.2200 -1.4593 24 1 7.6200 -0.2460 1.6834 25 1 7.6203 -1.6124 0.5427 26 1 9.7860 -0.6265 0.7511 27 1 3.3948 -4.1187 2.0318 28 1 2.7109 -1.3714 1.6439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211678.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:16 Heat of formation + Delta-G solvation = -3.169468 kcal Electronic energy + Delta-G solvation = -16133.132148 eV Core-core repulsion = 13432.456720 eV Total energy + Delta-G solvation = -2700.675428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29637 -38.27730 -37.28740 -36.06990 -35.13521 -31.89825 -30.48244 -28.03798 -26.91721 -24.49021 -23.09189 -20.85060 -19.99138 -18.78243 -18.00090 -17.21351 -16.75299 -16.21378 -15.98840 -15.80784 -14.97961 -14.87484 -14.76607 -14.38291 -13.82491 -13.66751 -13.44695 -13.35722 -13.11018 -12.89465 -12.64942 -12.22265 -11.92277 -11.77467 -11.62131 -11.28638 -11.19386 -10.85427 -9.94771 -9.15038 -8.75829 -8.46559 -6.39143 -0.26054 0.78421 0.88963 1.27500 1.33178 1.45438 1.54386 1.57109 1.70652 2.16395 2.21556 2.73022 3.12059 3.45698 3.49895 4.22870 4.39129 4.53723 4.67928 4.73736 4.79337 4.91152 5.08933 5.13482 5.22646 5.52145 5.74917 5.78893 5.85667 5.96161 6.35951 6.54405 6.69752 6.72351 7.03711 8.18698 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.011139 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.079050 B = 2513.113735 C = 4541.441019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.291 3.709 3 C 0.011 3.989 4 C -0.177 4.177 5 C -0.103 4.103 6 S 0.057 5.943 7 C -0.227 4.227 8 C -0.069 4.069 9 C 0.145 3.855 10 O -0.585 6.585 11 C -0.168 4.168 12 C 0.128 3.872 13 C -0.452 4.452 14 H 0.109 0.891 15 C 0.036 3.964 16 N -0.808 5.808 17 Si 0.982 3.018 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.248 1.248 21 C -0.153 4.153 22 H 0.121 0.879 23 H 0.173 0.827 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.399 0.601 27 H 0.295 0.705 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 1.346 1.015 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.023 4.023 3 C 0.005 3.995 4 C -0.205 4.205 5 C -0.218 4.218 6 S 0.321 5.679 7 C -0.361 4.361 8 C -0.080 4.080 9 C 0.065 3.935 10 O -0.393 6.393 11 C -0.175 4.175 12 C 0.123 3.877 13 C -0.479 4.479 14 H 0.127 0.873 15 C -0.182 4.182 16 N -0.431 5.431 17 Si 0.802 3.198 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.172 1.172 21 C -0.177 4.177 22 H 0.139 0.861 23 H 0.191 0.809 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.249 0.751 27 H 0.106 0.894 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.680 2.534 -0.665 7.175 hybrid contribution 0.653 -1.830 1.894 2.713 sum 7.333 0.704 1.229 7.468 Atomic orbital electron populations 1.81074 1.12677 1.10963 1.10455 1.26118 0.92957 0.91558 0.91661 1.15694 0.82793 1.01362 0.99657 1.19529 0.90786 1.06634 1.03552 1.22280 0.97098 1.02184 1.00285 1.83389 0.96074 1.50243 1.38193 1.24807 1.01699 1.06382 1.03163 1.18531 0.92572 0.98885 0.98045 1.20759 0.80099 0.97184 0.95446 1.86343 1.15839 1.73757 1.63392 1.19319 0.91892 1.06531 0.99789 1.18502 0.90891 0.88921 0.89393 1.20102 1.06395 1.02498 1.18871 0.87290 1.26889 0.94477 0.98061 0.98786 1.69818 1.19113 1.18143 1.36037 0.85206 0.79685 0.77413 0.77510 1.17993 1.20019 1.17175 1.20990 0.94181 1.01901 1.00663 0.86122 0.80935 0.91382 0.91874 0.75136 0.89379 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.47 18.54 19.00 0.35 -20.12 15 2 C 0.29 12.33 15.28 88.33 1.35 13.68 15 3 C 0.01 0.49 5.71 -21.50 -0.12 0.36 15 4 C -0.18 -7.33 9.70 22.83 0.22 -7.11 15 5 C -0.10 -4.33 6.47 22.92 0.15 -4.18 15 6 S 0.06 2.02 23.30 -56.49 -1.32 0.70 15 7 C -0.23 -8.15 10.34 66.64 0.69 -7.46 15 8 C -0.07 -2.69 5.81 -20.65 -0.12 -2.81 15 9 C 0.14 4.74 5.66 71.24 0.40 5.14 15 10 O -0.58 -16.00 12.46 -148.98 -1.86 -17.86 15 11 C -0.17 -7.35 6.02 -19.91 -0.12 -7.47 15 12 C 0.13 5.93 5.69 -19.69 -0.11 5.81 15 13 C -0.45 -19.52 7.72 23.28 0.18 -19.34 15 14 H 0.11 4.23 4.95 -2.91 -0.01 4.22 15 15 C 0.04 1.51 5.23 85.26 0.45 1.96 15 16 N -0.81 -36.55 11.04 21.83 0.24 -36.31 15 17 Si 0.98 31.26 29.57 68.60 2.03 33.29 15 18 H -0.26 -7.98 7.11 99.48 0.71 -7.27 15 19 H -0.28 -8.76 7.11 99.48 0.71 -8.05 15 20 H -0.25 -7.35 7.11 99.48 0.71 -6.65 15 21 C -0.15 -7.12 8.28 22.91 0.19 -6.93 15 22 H 0.12 4.45 8.06 -2.91 -0.02 4.43 15 23 H 0.17 5.57 7.41 -2.91 -0.02 5.55 15 24 H 0.07 2.14 6.57 -2.38 -0.02 2.13 15 25 H 0.06 2.14 7.58 -2.39 -0.02 2.12 15 26 H 0.40 6.53 9.12 -74.06 -0.68 5.85 15 27 H 0.30 12.23 8.30 -92.72 -0.77 11.46 15 28 H 0.12 5.65 6.44 -2.91 -0.02 5.63 15 Total: -1.00 -52.38 266.55 3.17 -49.21 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.56 Total: 19.42 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.15 Total: -28.34 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.59 Total: -56.42 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.86 Total: -17.86 kcal Atomic # 14 Polarization: 31.26 SS G_CDS: 2.03 Total: 33.29 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.32 Total: 0.70 kcal Total: -52.38 3.17 -49.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211678.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.041 kcal (2) G-P(sol) polarization free energy of solvation -52.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds