Wall clock time and date at job start Mon Mar 30 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39555 * 120.45282 * 358.27539 * 3 2 1 5 5 C 1.50706 * 119.53821 * 359.95780 * 4 3 2 6 6 O 1.42899 * 109.46651 * 179.97438 * 5 4 3 7 7 C 1.37310 * 120.91450 * 180.23417 * 4 3 2 8 8 C 1.39931 * 122.46092 * 359.47543 * 7 4 3 9 9 S 1.76215 * 130.12182 * 180.24063 * 8 7 4 10 10 C 1.75475 * 91.54637 * 180.26134 * 9 8 7 11 11 C 1.32719 * 110.67523 * 359.97438 * 10 9 8 12 12 C 1.39756 * 120.67668 * 0.52710 * 8 7 4 13 13 C 1.46239 * 120.45066 * 178.25492 * 3 2 1 14 14 C 1.39898 * 120.71169 * 0.02562 * 13 3 2 15 15 H 1.08008 * 119.99639 * 320.60080 * 14 13 3 16 16 C 1.40363 * 120.00337 * 140.60316 * 14 13 3 17 17 N 1.30621 * 119.99943 * 339.83371 * 16 14 13 18 18 Si 1.86796 * 119.99951 * 159.82626 * 16 14 13 19 19 H 1.48505 * 109.47045 * 90.00686 * 18 16 14 20 20 H 1.48502 * 109.47382 * 210.00049 * 18 16 14 21 21 H 1.48497 * 109.47533 * 330.00171 * 18 16 14 22 22 H 1.08998 * 109.47261 * 59.99754 * 5 4 3 23 23 H 1.08998 * 109.47302 * 300.00044 * 5 4 3 24 24 H 0.96701 * 114.00061 * 180.02562 * 6 5 4 25 25 H 1.07999 * 118.76411 * 179.74155 * 7 4 3 26 26 H 1.08007 * 124.66408 * 180.02562 * 10 9 8 27 27 H 1.08003 * 122.10330 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00247 * 182.03839 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2758 -1.2015 0.0362 5 6 2.5227 -2.5063 0.0764 6 8 3.4517 -3.5916 0.1084 7 6 4.6489 -1.2118 0.0414 8 6 5.4089 -0.0376 0.0003 9 16 7.1571 0.1838 -0.0075 10 6 6.9835 1.9291 -0.0605 11 6 5.7015 2.2725 -0.0706 12 6 4.7870 1.2133 -0.0373 13 6 3.3086 1.2611 -0.0384 14 6 2.6332 2.4857 -0.0752 15 1 1.7393 2.5917 -0.6720 16 6 3.1174 3.5767 0.6635 17 7 3.9293 3.3771 1.6670 18 14 2.6006 5.3138 0.2113 19 1 1.3683 5.6738 0.9577 20 1 3.6879 6.2616 0.5646 21 1 2.3348 5.3873 -1.2479 22 1 1.8955 -2.5913 -0.8109 23 1 1.8966 -2.5371 0.9681 24 1 3.0362 -4.4644 0.1348 25 1 5.1614 -2.1619 0.0741 26 1 7.8068 2.6280 -0.0826 27 1 5.3839 3.3042 -0.1023 28 1 4.2405 4.1284 2.1959 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:55 Heat of formation + Delta-G solvation = -3.570423 kcal Electronic energy + Delta-G solvation = -16261.654097 eV Core-core repulsion = 13560.961283 eV Total energy + Delta-G solvation = -2700.692814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09457 -38.02583 -37.21190 -35.81964 -35.30995 -31.96354 -30.94175 -27.65131 -26.50690 -24.39090 -22.88594 -21.55759 -19.42219 -18.82083 -17.97210 -17.71065 -16.85586 -16.36104 -15.91839 -15.60560 -14.97560 -14.66092 -14.47429 -14.32316 -13.87790 -13.60173 -13.50900 -13.33103 -13.18948 -12.96927 -12.66340 -12.20505 -12.04588 -11.83671 -11.68972 -11.35622 -11.06770 -10.80859 -9.97795 -9.02757 -8.99036 -8.35364 -6.61183 -0.00186 0.47829 0.94480 1.33569 1.36752 1.42203 1.50348 1.65153 2.03079 2.10458 2.40471 2.58012 3.33611 3.42773 3.56578 4.09039 4.37412 4.40065 4.51819 4.54147 4.77988 4.95247 4.99689 5.22016 5.25625 5.35031 5.78341 5.82446 5.89153 5.99744 6.16822 6.49103 6.61784 6.95837 6.98088 8.00137 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.010402 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.396377 B = 2691.273138 C = 4291.224297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.310 3.690 3 C -0.224 4.224 4 C 0.016 3.984 5 C 0.125 3.875 6 O -0.573 6.573 7 C -0.201 4.201 8 C -0.094 4.094 9 S 0.068 5.932 10 C -0.254 4.254 11 C -0.061 4.061 12 C -0.149 4.149 13 C 0.185 3.815 14 C -0.457 4.457 15 H 0.086 0.914 16 C 0.052 3.948 17 N -0.766 5.766 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.251 1.251 21 H -0.255 1.255 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.399 0.601 25 H 0.123 0.877 26 H 0.181 0.819 27 H 0.125 0.875 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -2.029 -1.522 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C 0.001 3.999 3 C -0.232 4.232 4 C 0.011 3.989 5 C 0.047 3.953 6 O -0.382 6.382 7 C -0.225 4.225 8 C -0.210 4.210 9 S 0.330 5.670 10 C -0.387 4.387 11 C -0.091 4.091 12 C -0.157 4.157 13 C 0.177 3.823 14 C -0.483 4.483 15 H 0.104 0.896 16 C -0.172 4.172 17 N -0.387 5.387 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.174 1.174 21 H -0.179 1.179 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.249 0.751 25 H 0.141 0.859 26 H 0.198 0.802 27 H 0.143 0.857 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.319 -2.340 -1.307 5.956 hybrid contribution -1.523 1.285 0.073 1.994 sum 3.796 -1.055 -1.235 4.129 Atomic orbital electron populations 1.81013 1.12677 1.10203 1.16384 1.25596 0.92431 0.91060 0.90769 1.16456 0.83317 0.93653 1.29798 1.19126 0.93254 0.91990 0.94568 1.20782 0.89871 0.84201 1.00442 1.86445 1.36328 1.17724 1.97684 1.19296 0.92188 0.95182 1.15793 1.22906 0.96912 0.97248 1.03939 1.83307 1.01577 1.03015 1.79064 1.25158 1.00069 0.97668 1.15767 1.19775 0.91628 0.99396 0.98257 1.19249 0.93318 0.91556 1.11618 1.19409 0.89040 0.90736 0.83104 1.19719 1.09872 0.94964 1.23777 0.89627 1.26729 0.92663 1.04948 0.92832 1.69742 1.21477 1.37098 1.10355 0.85351 0.79664 0.75506 0.80506 1.18931 1.17406 1.17854 0.91724 0.92123 0.75091 0.85888 0.80203 0.85695 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.55 18.54 19.00 0.35 -24.20 15 2 C 0.31 14.41 13.51 88.33 1.19 15.60 15 3 C -0.22 -10.48 5.94 -19.64 -0.12 -10.59 15 4 C 0.02 0.68 5.89 -19.76 -0.12 0.57 15 5 C 0.12 4.15 6.42 71.24 0.46 4.60 15 6 O -0.57 -16.48 12.04 -148.98 -1.79 -18.27 15 7 C -0.20 -8.55 9.32 22.46 0.21 -8.34 15 8 C -0.09 -4.10 6.48 23.05 0.15 -3.95 15 9 S 0.07 2.45 23.30 -56.49 -1.32 1.14 15 10 C -0.25 -9.16 11.11 66.65 0.74 -8.42 15 11 C -0.06 -2.60 8.26 21.52 0.18 -2.42 15 12 C -0.15 -6.99 5.52 -19.93 -0.11 -7.10 15 13 C 0.18 9.13 5.66 -18.23 -0.10 9.03 15 14 C -0.46 -22.18 8.22 23.19 0.19 -21.98 15 15 H 0.09 4.19 7.75 -2.91 -0.02 4.17 15 16 C 0.05 2.29 3.86 85.39 0.33 2.62 15 17 N -0.77 -34.46 10.81 21.90 0.24 -34.22 15 18 Si 0.97 33.38 29.61 68.60 2.03 35.41 15 19 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 20 H -0.25 -7.85 7.11 99.48 0.71 -7.15 15 21 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 22 H 0.06 2.01 8.13 -2.39 -0.02 1.99 15 23 H 0.06 1.94 8.13 -2.39 -0.02 1.92 15 24 H 0.40 6.68 9.12 -74.06 -0.68 6.00 15 25 H 0.12 4.92 6.85 -2.91 -0.02 4.90 15 26 H 0.18 5.17 8.06 -2.91 -0.02 5.15 15 27 H 0.13 5.27 6.07 -2.91 -0.02 5.25 15 28 H 0.31 12.13 8.29 -92.71 -0.77 11.36 15 Total: -1.00 -56.52 268.19 3.07 -53.45 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.55 Total: 17.08 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.00 Total: -30.39 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.59 Total: -58.42 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.79 Total: -18.27 kcal Atomic # 14 Polarization: 33.38 SS G_CDS: 2.03 Total: 35.41 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.32 Total: 1.14 kcal Total: -56.52 3.07 -53.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.882 kcal (2) G-P(sol) polarization free energy of solvation -56.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds