Wall clock time and date at job start Mon Mar 30 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38318 * 119.82887 * 246.29088 * 3 2 1 5 5 C 1.40773 * 119.78851 * 179.97438 * 4 3 2 6 6 C 1.41348 * 119.95817 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00215 * 205.89698 * 6 5 4 8 8 C 1.39837 * 120.00172 * 25.89327 * 6 5 4 9 9 N 1.30906 * 119.99494 * 15.48032 * 8 6 5 10 10 Si 1.86800 * 120.00425 * 195.47680 * 8 6 5 11 11 H 1.48507 * 109.46938 * 94.96584 * 10 8 6 12 12 H 1.48493 * 109.47279 * 214.96935 * 10 8 6 13 13 H 1.48502 * 109.46985 * 334.97090 * 10 8 6 14 14 C 1.40020 * 120.08451 * 0.02562 * 5 4 3 15 15 C 1.50705 * 119.76547 * 180.27682 * 14 5 4 16 16 O 1.42902 * 109.46527 * 269.72438 * 15 14 5 17 17 C 1.40456 * 120.47828 * 359.97438 * 14 5 4 18 18 C 1.45661 * 129.05740 * 180.02562 * 17 14 5 19 19 C 1.31646 * 114.90804 * 179.97438 * 18 17 14 20 20 S 1.75255 * 111.50697 * 0.02562 * 19 18 17 21 21 C 1.40064 * 119.21519 * 0.02562 * 17 14 5 22 22 H 1.07996 * 120.10644 * 359.97438 * 4 3 2 23 23 H 0.97008 * 119.99670 * 180.02562 * 9 8 6 24 24 H 1.09003 * 109.46910 * 29.71611 * 15 14 5 25 25 H 1.08990 * 109.47727 * 149.72285 * 15 14 5 26 26 H 0.96709 * 113.99586 * 179.97438 * 16 15 14 27 27 H 1.08002 * 122.54515 * 0.02562 * 18 17 14 28 28 H 1.07998 * 124.24342 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2558 0.4834 1.0987 5 6 4.6635 0.4832 1.0980 6 6 5.3700 0.9762 2.2186 7 1 6.3687 1.3691 2.0973 8 6 4.7759 0.9553 3.4843 9 7 3.7137 0.2202 3.6966 10 14 5.4980 1.9761 4.8721 11 1 4.7882 3.2782 4.9498 12 1 5.3390 1.2481 6.1565 13 1 6.9408 2.2136 4.6129 14 6 5.3648 -0.0039 -0.0118 15 6 6.8718 -0.0066 -0.0023 16 8 7.3536 1.2250 -0.5437 17 6 4.6738 -0.4959 -1.1313 18 6 5.2071 -1.0411 -2.3723 19 6 4.2990 -1.4251 -3.2446 20 16 2.6753 -1.1596 -2.6408 21 6 3.2732 -0.4934 -1.1257 22 1 2.7146 0.8594 1.9543 23 1 3.3014 0.2060 4.5746 24 1 7.2285 -0.1175 1.0217 25 1 7.2375 -0.8368 -0.6064 26 1 8.3180 1.2933 -0.5682 27 1 6.2670 -1.1249 -2.5620 28 1 4.5261 -1.8503 -4.2111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212149.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:22 Heat of formation + Delta-G solvation = 9.030601 kcal Electronic energy + Delta-G solvation = -16180.091555 eV Core-core repulsion = 13479.945162 eV Total energy + Delta-G solvation = -2700.146393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74834 -36.20590 -35.64154 -35.06690 -33.06408 -31.01605 -28.77258 -26.17136 -25.16244 -22.67060 -21.21365 -20.05706 -18.30892 -16.89373 -16.67040 -15.91404 -15.49688 -14.89651 -14.25502 -13.59288 -13.45674 -13.37070 -13.12300 -12.69377 -12.40719 -12.22359 -11.90356 -11.69546 -11.49345 -11.30218 -11.09440 -10.92893 -10.40488 -10.30291 -10.02964 -9.74674 -9.41966 -9.21092 -8.49908 -7.61682 -7.18542 -6.94028 -4.68432 1.55243 1.93733 2.35677 2.78853 2.79963 2.94543 2.97653 3.16983 3.37604 3.71334 3.79056 4.36033 4.76464 5.01297 5.34397 5.48273 5.86223 5.91838 6.04420 6.18740 6.31782 6.41265 6.60343 6.75862 6.89133 7.01267 7.15998 7.26191 7.51573 7.76682 8.10015 8.21637 8.30289 8.42880 8.52096 9.83699 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.008432 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.736697 B = 3320.070804 C = 4564.389386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.275 3.725 3 C -0.001 4.001 4 C -0.054 4.054 5 C 0.120 3.880 6 C -0.436 4.436 7 H 0.093 0.907 8 C 0.071 3.929 9 N -0.787 5.787 10 Si 0.917 3.083 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.258 1.258 14 C -0.167 4.167 15 C 0.139 3.861 16 O -0.569 6.569 17 C -0.018 4.018 18 C -0.111 4.111 19 C -0.202 4.202 20 S 0.019 5.981 21 C -0.196 4.196 22 H 0.141 0.859 23 H 0.289 0.711 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.360 0.640 27 H 0.133 0.867 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -1.043 -3.826 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.038 4.038 3 C -0.009 4.009 4 C -0.078 4.078 5 C 0.116 3.884 6 C -0.465 4.465 7 H 0.111 0.889 8 C -0.148 4.148 9 N -0.412 5.412 10 Si 0.741 3.259 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.182 1.182 14 C -0.172 4.172 15 C 0.062 3.938 16 O -0.373 6.373 17 C -0.024 4.024 18 C -0.143 4.143 19 C -0.335 4.335 20 S 0.280 5.720 21 C -0.312 4.312 22 H 0.158 0.842 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.205 0.795 27 H 0.150 0.850 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.350 -1.306 -4.333 5.100 hybrid contribution 2.602 0.401 1.241 2.911 sum 4.952 -0.905 -3.092 5.908 Atomic orbital electron populations 1.81064 1.12308 1.10751 1.09307 1.26097 0.93067 0.92409 0.92278 1.15225 0.82777 1.07446 0.95476 1.21639 0.94826 0.96732 0.94580 1.17120 0.90615 0.88758 0.91905 1.19707 1.02293 1.33843 0.90663 0.88901 1.26062 0.94259 0.93673 1.00836 1.69767 1.17431 1.28928 1.25039 0.86124 0.80668 0.80150 0.78965 1.19006 1.20032 1.18197 1.19302 0.92559 1.09755 0.95630 1.20669 0.91825 0.84488 0.96821 1.86693 1.24622 1.39703 1.86253 1.18653 0.90641 0.99574 0.93561 1.20929 0.99627 1.00733 0.92972 1.24670 0.96021 1.09203 1.03651 1.83669 1.07741 1.68607 1.12027 1.21735 0.95622 1.15903 0.97978 0.84161 0.90015 0.92599 0.95114 0.79494 0.84972 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.29 18.54 41.84 0.78 -9.52 15 2 C 0.28 6.13 15.04 -22.47 -0.34 5.79 15 3 C 0.00 -0.03 5.75 -106.61 -0.61 -0.64 15 4 C -0.05 -1.27 8.32 -38.59 -0.32 -1.59 15 5 C 0.12 2.82 5.55 -107.09 -0.59 2.23 15 6 C -0.44 -10.00 8.07 -37.80 -0.31 -10.31 15 7 H 0.09 2.06 6.81 -52.49 -0.36 1.70 15 8 C 0.07 1.56 5.17 -17.35 -0.09 1.47 15 9 N -0.79 -18.01 10.89 55.54 0.60 -17.40 15 10 Si 0.92 16.65 29.59 -169.99 -5.03 11.62 15 11 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 12 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 13 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 14 C -0.17 -3.66 5.63 -103.12 -0.58 -4.24 15 15 C 0.14 2.55 6.35 36.01 0.23 2.78 15 16 O -0.57 -10.07 13.64 -35.23 -0.48 -10.55 15 17 C -0.02 -0.37 5.96 -105.42 -0.63 -1.00 15 18 C -0.11 -1.97 9.78 -38.49 -0.38 -2.35 15 19 C -0.20 -3.31 11.00 28.86 0.32 -3.00 15 20 S 0.02 0.36 22.92 -107.50 -2.46 -2.10 15 21 C -0.20 -4.25 6.37 -37.57 -0.24 -4.49 15 22 H 0.14 3.36 6.14 -52.49 -0.32 3.03 15 23 H 0.29 6.04 8.30 -40.82 -0.34 5.70 15 24 H 0.06 1.02 6.70 -51.93 -0.35 0.67 15 25 H 0.03 0.50 7.22 -51.93 -0.38 0.12 15 26 H 0.36 4.30 9.12 45.56 0.42 4.72 15 27 H 0.13 2.02 7.51 -52.49 -0.39 1.62 15 28 H 0.15 1.96 8.06 -52.49 -0.42 1.54 15 LS Contribution 269.74 15.07 4.06 4.06 Total: -1.00 -26.31 269.74 -7.01 -33.31 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.94 Total: 5.92 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -3.54 Total: -15.34 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 1.38 Total: -26.92 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.48 Total: -10.55 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.46 Total: -2.10 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.31 -7.01 -33.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212149.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.345 kcal (2) G-P(sol) polarization free energy of solvation -26.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds