Wall clock time and date at job start Mon Mar 30 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38318 * 119.82887 * 246.29088 * 3 2 1 5 5 C 1.40773 * 119.78851 * 179.97438 * 4 3 2 6 6 C 1.41348 * 119.95817 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00215 * 205.89698 * 6 5 4 8 8 C 1.39837 * 120.00172 * 25.89327 * 6 5 4 9 9 N 1.30906 * 119.99494 * 15.48032 * 8 6 5 10 10 Si 1.86800 * 120.00425 * 195.47680 * 8 6 5 11 11 H 1.48507 * 109.46938 * 94.96584 * 10 8 6 12 12 H 1.48493 * 109.47279 * 214.96935 * 10 8 6 13 13 H 1.48502 * 109.46985 * 334.97090 * 10 8 6 14 14 C 1.40020 * 120.08451 * 0.02562 * 5 4 3 15 15 C 1.50705 * 119.76547 * 180.27682 * 14 5 4 16 16 O 1.42902 * 109.46527 * 269.72438 * 15 14 5 17 17 C 1.40456 * 120.47828 * 359.97438 * 14 5 4 18 18 C 1.45661 * 129.05740 * 180.02562 * 17 14 5 19 19 C 1.31646 * 114.90804 * 179.97438 * 18 17 14 20 20 S 1.75255 * 111.50697 * 0.02562 * 19 18 17 21 21 C 1.40064 * 119.21519 * 0.02562 * 17 14 5 22 22 H 1.07996 * 120.10644 * 359.97438 * 4 3 2 23 23 H 0.97008 * 119.99670 * 180.02562 * 9 8 6 24 24 H 1.09003 * 109.46910 * 29.71611 * 15 14 5 25 25 H 1.08990 * 109.47727 * 149.72285 * 15 14 5 26 26 H 0.96709 * 113.99586 * 179.97438 * 16 15 14 27 27 H 1.08002 * 122.54515 * 0.02562 * 18 17 14 28 28 H 1.07998 * 124.24342 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2558 0.4834 1.0987 5 6 4.6635 0.4832 1.0980 6 6 5.3700 0.9762 2.2186 7 1 6.3687 1.3691 2.0973 8 6 4.7759 0.9553 3.4843 9 7 3.7137 0.2202 3.6966 10 14 5.4980 1.9761 4.8721 11 1 4.7882 3.2782 4.9498 12 1 5.3390 1.2481 6.1565 13 1 6.9408 2.2136 4.6129 14 6 5.3648 -0.0039 -0.0118 15 6 6.8718 -0.0066 -0.0023 16 8 7.3536 1.2250 -0.5437 17 6 4.6738 -0.4959 -1.1313 18 6 5.2071 -1.0411 -2.3723 19 6 4.2990 -1.4251 -3.2446 20 16 2.6753 -1.1596 -2.6408 21 6 3.2732 -0.4934 -1.1257 22 1 2.7146 0.8594 1.9543 23 1 3.3014 0.2060 4.5746 24 1 7.2285 -0.1175 1.0217 25 1 7.2375 -0.8368 -0.6064 26 1 8.3180 1.2933 -0.5682 27 1 6.2670 -1.1249 -2.5620 28 1 4.5261 -1.8503 -4.2111 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212149.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:21 Heat of formation + Delta-G solvation = -6.424256 kcal Electronic energy + Delta-G solvation = -16180.761727 eV Core-core repulsion = 13479.945162 eV Total energy + Delta-G solvation = -2700.816566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35897 -37.86330 -37.12570 -36.65812 -34.67465 -32.65626 -30.34824 -27.77943 -26.78009 -24.20375 -22.83396 -21.59571 -19.90500 -18.55024 -18.04245 -17.45810 -17.06325 -16.46607 -15.83943 -15.14324 -15.09961 -14.84326 -14.67682 -14.28921 -13.95666 -13.85487 -13.60539 -13.25862 -12.98580 -12.79767 -12.64194 -12.47934 -11.95293 -11.81530 -11.56399 -11.30173 -11.04354 -10.59308 -10.10240 -9.23732 -8.80766 -8.51869 -6.39243 -0.07487 0.32445 0.87817 1.28952 1.29975 1.44825 1.57287 1.58939 1.66345 2.12554 2.20392 2.67259 3.02193 3.42081 4.00243 4.06252 4.39672 4.49417 4.58209 4.70649 4.86824 4.93249 5.07849 5.19363 5.26993 5.38752 5.47064 5.67593 5.88997 6.08872 6.35331 6.47653 6.74699 6.81768 7.20841 8.22570 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.008432 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.736697 B = 3320.070804 C = 4564.389386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.281 3.719 3 C -0.010 4.010 4 C -0.077 4.077 5 C 0.094 3.906 6 C -0.459 4.459 7 H 0.095 0.905 8 C 0.037 3.963 9 N -0.820 5.820 10 Si 0.982 3.018 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.251 1.251 14 C -0.176 4.176 15 C 0.145 3.855 16 O -0.585 6.585 17 C -0.031 4.031 18 C -0.123 4.123 19 C -0.176 4.176 20 S 0.019 5.981 21 C -0.219 4.219 22 H 0.125 0.875 23 H 0.293 0.707 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.387 0.613 27 H 0.164 0.836 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -1.446 -5.234 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.033 4.033 3 C -0.018 4.018 4 C -0.100 4.100 5 C 0.090 3.910 6 C -0.487 4.487 7 H 0.113 0.887 8 C -0.179 4.179 9 N -0.446 5.446 10 Si 0.803 3.197 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.174 1.174 14 C -0.181 4.181 15 C 0.068 3.932 16 O -0.393 6.393 17 C -0.038 4.038 18 C -0.154 4.154 19 C -0.309 4.309 20 S 0.279 5.721 21 C -0.335 4.335 22 H 0.143 0.857 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.236 0.764 27 H 0.181 0.819 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.132 -1.712 -5.757 7.290 hybrid contribution 2.065 0.472 1.512 2.602 sum 6.197 -1.241 -4.245 7.613 Atomic orbital electron populations 1.81041 1.12384 1.11176 1.09709 1.26143 0.93075 0.92125 0.91946 1.15324 0.82753 1.07772 0.95954 1.21526 0.95258 0.98506 0.94753 1.17454 0.90815 0.89624 0.93098 1.19865 1.02635 1.34980 0.91245 0.88695 1.26802 0.94357 0.94076 1.02693 1.69827 1.18722 1.30229 1.25804 0.85157 0.80121 0.78285 0.76148 1.19208 1.19563 1.17382 1.19802 0.94763 1.08346 0.95209 1.20577 0.89686 0.85624 0.97333 1.86605 1.27299 1.39332 1.86045 1.19132 0.90579 0.99259 0.94787 1.21115 1.01466 1.01194 0.91616 1.25156 0.93834 1.07124 1.04802 1.83679 1.09787 1.68292 1.10344 1.22081 0.96488 1.16009 0.98968 0.85717 0.89602 0.93015 0.92354 0.76447 0.81909 0.78393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.27 18.54 19.00 0.35 -20.92 15 2 C 0.28 12.79 15.04 88.33 1.33 14.12 15 3 C -0.01 -0.46 5.75 -21.15 -0.12 -0.58 15 4 C -0.08 -3.76 8.32 22.91 0.19 -3.57 15 5 C 0.09 4.54 5.55 -21.46 -0.12 4.42 15 6 C -0.46 -21.45 8.07 23.42 0.19 -21.26 15 7 H 0.10 4.25 6.81 -2.91 -0.02 4.23 15 8 C 0.04 1.66 5.17 85.22 0.44 2.10 15 9 N -0.82 -38.85 10.89 21.81 0.24 -38.61 15 10 Si 0.98 34.27 29.59 68.60 2.03 36.30 15 11 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 12 H -0.27 -9.16 7.11 99.48 0.71 -8.46 15 13 H -0.25 -8.34 7.11 99.48 0.71 -7.63 15 14 C -0.18 -7.65 5.63 -18.89 -0.11 -7.75 15 15 C 0.14 5.07 6.35 71.24 0.45 5.52 15 16 O -0.59 -19.43 13.64 -148.98 -2.03 -21.46 15 17 C -0.03 -1.25 5.96 -20.38 -0.12 -1.37 15 18 C -0.12 -3.95 9.78 23.54 0.23 -3.72 15 19 C -0.18 -5.05 11.00 67.18 0.74 -4.32 15 20 S 0.02 0.69 22.92 -56.49 -1.29 -0.61 15 21 C -0.22 -9.44 6.37 23.57 0.15 -9.29 15 22 H 0.13 6.35 6.14 -2.91 -0.02 6.34 15 23 H 0.29 12.67 8.30 -92.70 -0.77 11.90 15 24 H 0.05 1.84 6.70 -2.39 -0.02 1.82 15 25 H 0.06 1.71 7.22 -2.39 -0.02 1.69 15 26 H 0.39 8.13 9.12 -74.05 -0.68 7.46 15 27 H 0.16 4.18 7.51 -2.91 -0.02 4.16 15 28 H 0.20 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -57.36 269.74 3.10 -54.26 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.56 Total: 16.75 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.25 Total: -25.71 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.59 Total: -59.53 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -2.03 Total: -21.46 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.29 Total: -0.61 kcal Total: -57.36 3.10 -54.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212149.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.835 kcal (2) G-P(sol) polarization free energy of solvation -57.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds