Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39243 * 120.00370 * 299.84437 * 3 2 1 5 5 C 1.38160 * 120.01321 * 179.97438 * 4 3 2 6 6 C 1.37706 * 120.48489 * 0.06412 * 5 4 3 7 7 C 1.40510 * 120.66318 * 359.91958 * 6 5 4 8 8 C 1.46702 * 129.48701 * 180.02562 * 7 6 5 9 9 C 1.40781 * 123.29874 * 359.73179 * 8 7 6 10 10 H 1.07996 * 120.00694 * 143.12576 * 9 8 7 11 11 C 1.39755 * 119.99854 * 323.12758 * 9 8 7 12 12 N 1.31051 * 119.99742 * 339.34946 * 11 9 8 13 13 Si 1.86797 * 120.00097 * 159.34610 * 11 9 8 14 14 H 1.48498 * 109.46856 * 90.00045 * 13 11 9 15 15 H 1.48509 * 109.47047 * 209.99880 * 13 11 9 16 16 H 1.48498 * 109.47304 * 329.99957 * 13 11 9 17 17 C 1.36404 * 113.40712 * 179.97438 * 8 7 6 18 18 C 1.50696 * 124.01911 * 179.97438 * 17 8 7 19 19 O 1.42903 * 109.46841 * 89.17132 * 18 17 8 20 20 S 1.69984 * 111.95544 * 0.02562 * 17 8 7 21 21 C 1.39296 * 119.31883 * 0.05666 * 7 6 5 22 22 H 1.08005 * 119.98846 * 359.97438 * 4 3 2 23 23 H 1.08003 * 119.75502 * 180.02562 * 5 4 3 24 24 H 1.07995 * 119.66725 * 179.97438 * 6 5 4 25 25 H 0.96998 * 119.99969 * 177.39679 * 12 11 9 26 26 H 1.09000 * 109.47043 * 209.16547 * 18 17 8 27 27 H 1.08989 * 109.47741 * 329.17160 * 18 17 8 28 28 H 0.96697 * 114.00069 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2645 -0.5991 1.0459 5 6 4.6461 -0.5991 1.0458 6 6 5.3447 -0.0076 0.0170 7 6 4.6666 0.6043 -1.0507 8 6 5.2080 1.2832 -2.2331 9 6 6.5868 1.4303 -2.4762 10 1 6.9678 1.3623 -3.4845 11 6 7.4628 1.6643 -1.4127 12 7 7.0066 2.1430 -0.2813 13 14 9.2838 1.2946 -1.6039 14 1 9.9821 2.4997 -2.1189 15 1 9.8536 0.9181 -0.2852 16 1 9.4635 0.1722 -2.5595 17 6 4.2446 1.7625 -3.0714 18 6 4.5333 2.4991 -4.3540 19 8 4.6458 1.5616 -5.4266 20 16 2.6796 1.4313 -2.4963 21 6 3.2737 0.6095 -1.0607 22 1 2.7246 -1.0644 1.8574 23 1 5.1822 -1.0659 1.8590 24 1 6.4245 -0.0149 0.0305 25 1 7.6079 2.2699 0.4692 26 1 3.7214 3.1954 -4.5637 27 1 5.4681 3.0505 -4.2539 28 1 4.8313 1.9665 -6.2850 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212165.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = 10.057760 kcal Electronic energy + Delta-G solvation = -16184.448166 eV Core-core repulsion = 13484.346314 eV Total energy + Delta-G solvation = -2700.101852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88330 -36.54700 -35.88320 -34.63171 -32.72923 -30.48892 -29.42407 -26.95327 -24.68216 -22.73825 -21.86201 -19.58053 -18.40701 -16.60587 -16.52824 -15.98424 -15.35872 -14.79237 -14.57616 -14.13190 -13.65605 -13.22379 -13.03633 -12.60921 -12.49683 -12.34276 -12.13516 -11.71102 -11.45292 -11.26661 -10.89462 -10.82779 -10.67360 -10.21883 -9.90790 -9.69402 -9.18939 -9.07104 -8.59875 -7.58575 -7.07266 -6.66598 -4.55559 1.31017 1.77603 2.58103 2.77889 2.98622 3.03621 3.08638 3.19873 3.50422 3.73818 3.84593 4.42352 4.46699 4.91465 5.35663 5.41782 5.61631 5.91360 5.98215 6.04402 6.24939 6.35363 6.52806 6.67673 6.86954 6.91511 7.03834 7.14730 7.50636 7.75819 7.91933 8.18798 8.38964 8.46154 8.67895 9.99582 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.009588 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.912588 B = 2919.724539 C = 4234.852504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.270 3.730 3 C -0.036 4.036 4 C -0.057 4.057 5 C -0.163 4.163 6 C 0.002 3.998 7 C -0.046 4.046 8 C 0.144 3.856 9 C -0.447 4.447 10 H 0.088 0.912 11 C 0.081 3.919 12 N -0.791 5.791 13 Si 0.900 3.100 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.259 1.259 17 C -0.390 4.390 18 C 0.186 3.814 19 O -0.574 6.574 20 S 0.074 5.926 21 C -0.097 4.097 22 H 0.124 0.876 23 H 0.124 0.876 24 H 0.129 0.871 25 H 0.284 0.716 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -1.688 0.740 2.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.044 4.044 3 C -0.046 4.046 4 C -0.080 4.080 5 C -0.184 4.184 6 C -0.018 4.018 7 C -0.055 4.055 8 C 0.135 3.865 9 C -0.479 4.479 10 H 0.106 0.894 11 C -0.138 4.138 12 N -0.416 5.416 13 Si 0.723 3.277 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.182 1.182 17 C -0.506 4.506 18 C 0.108 3.892 19 O -0.378 6.378 20 S 0.339 5.661 21 C -0.216 4.216 22 H 0.142 0.858 23 H 0.142 0.858 24 H 0.147 0.853 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.671 -1.598 0.777 2.439 hybrid contribution 2.901 0.084 0.140 2.906 sum 1.230 -1.514 0.917 2.155 Atomic orbital electron populations 1.81123 1.12080 1.10181 1.08772 1.25832 0.92764 0.92836 0.92954 1.15207 0.83342 1.08142 0.97892 1.20797 0.94397 0.97098 0.95692 1.20723 0.93295 1.04308 1.00095 1.21293 1.00454 0.89916 0.90153 1.19406 0.90126 0.99000 0.97010 1.17210 0.93718 0.88442 0.87132 1.18981 0.90156 1.43698 0.95077 0.89388 1.25871 1.01409 0.92032 0.94479 1.69983 1.38585 1.29603 1.03456 0.86439 0.81959 0.80219 0.79042 1.19349 1.19844 1.18228 1.22488 0.94581 1.26172 1.07396 1.19809 0.97988 0.88461 0.82918 1.86710 1.94898 1.37767 1.18456 1.81986 1.09506 1.60169 1.14426 1.22675 0.97271 1.02934 0.98693 0.85772 0.85822 0.85300 0.90492 0.95651 0.92743 0.79726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.78 18.54 41.84 0.78 -8.01 15 2 C 0.27 5.14 15.05 -22.47 -0.34 4.80 15 3 C -0.04 -0.68 5.77 -106.47 -0.61 -1.29 15 4 C -0.06 -0.93 9.73 -39.24 -0.38 -1.31 15 5 C -0.16 -2.69 9.99 -39.80 -0.40 -3.09 15 6 C 0.00 0.05 8.43 -38.92 -0.33 -0.28 15 7 C -0.05 -1.05 5.56 -105.23 -0.58 -1.63 15 8 C 0.14 3.56 5.40 -106.18 -0.57 2.98 15 9 C -0.45 -10.84 8.16 -38.05 -0.31 -11.15 15 10 H 0.09 2.14 7.86 -52.49 -0.41 1.73 15 11 C 0.08 1.81 4.08 -17.32 -0.07 1.74 15 12 N -0.79 -18.11 10.74 55.54 0.60 -17.52 15 13 Si 0.90 16.89 29.61 -169.99 -5.03 11.86 15 14 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 15 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 17 C -0.39 -9.22 5.93 -34.97 -0.21 -9.43 15 18 C 0.19 3.86 7.08 36.00 0.25 4.11 15 19 O -0.57 -11.34 13.64 -35.23 -0.48 -11.82 15 20 S 0.07 1.63 22.57 -107.50 -2.43 -0.80 15 21 C -0.10 -2.12 6.31 -38.06 -0.24 -2.36 15 22 H 0.12 1.60 8.06 -52.48 -0.42 1.17 15 23 H 0.12 1.63 8.06 -52.48 -0.42 1.20 15 24 H 0.13 2.62 5.98 -52.49 -0.31 2.30 15 25 H 0.28 5.92 8.30 -40.82 -0.34 5.58 15 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 27 H 0.05 1.12 7.57 -51.94 -0.39 0.73 15 28 H 0.36 4.93 9.12 45.56 0.42 5.35 15 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -27.33 270.99 -7.38 -34.72 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -1.11 Total: 4.39 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.79 Total: -16.90 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 1.37 Total: -25.53 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.48 Total: -11.82 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.43 Total: -0.80 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.33 -7.38 -34.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212165.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.774 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds