Wall clock time and date at job start Mon Mar 30 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35172 * 117.00362 * 2 1 4 4 S 1.75193 * 124.60539 * 4.21027 * 3 2 1 5 5 C 1.75909 * 92.72307 * 180.18674 * 4 3 2 6 6 C 1.39745 * 129.64267 * 179.79994 * 5 4 3 7 7 C 1.37894 * 120.84914 * 180.02562 * 6 5 4 8 8 C 1.38157 * 120.32058 * 0.02562 * 7 6 5 9 9 C 1.38993 * 120.06350 * 359.93053 * 8 7 6 10 10 C 1.43196 * 119.95654 * 180.02562 * 9 8 7 11 11 N 6.00784 * 162.34405 * 349.93327 * 2 1 3 12 12 C 1.39218 * 110.61807 * 359.82778 * 5 4 3 13 13 C 1.37692 * 124.61432 * 184.06516 * 3 2 1 14 14 C 1.40772 * 123.22158 * 0.02562 * 13 3 2 15 15 H 1.08008 * 119.99501 * 139.55151 * 14 13 3 16 16 C 1.39543 * 120.00642 * 319.27362 * 14 13 3 17 17 N 1.31248 * 120.00394 * 160.17902 * 16 14 13 18 18 Si 1.86806 * 119.99919 * 340.18765 * 16 14 13 19 19 H 1.48496 * 109.47120 * 94.78901 * 18 16 14 20 20 H 1.48491 * 109.47090 * 214.79357 * 18 16 14 21 21 H 1.48504 * 109.46767 * 334.79394 * 18 16 14 22 22 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99805 * 1 2 3 24 24 H 1.09002 * 109.47293 * 59.99846 * 1 2 3 25 25 H 1.08002 * 119.58032 * 0.02562 * 6 5 4 26 26 H 1.07998 * 119.84013 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.96307 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00137 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0427 1.2043 0.0000 4 16 1.2132 2.7438 0.1059 5 6 2.7166 3.6541 0.0319 6 6 2.9245 5.0358 0.0580 7 6 4.1977 5.5607 -0.0123 8 6 5.2926 4.7240 -0.1105 9 6 5.1155 3.3457 -0.1376 10 6 6.2521 2.4805 -0.2389 11 7 7.1538 1.7941 -0.3185 12 6 3.8065 2.7935 -0.0662 13 6 3.4050 1.3880 -0.0803 14 6 4.3225 0.3244 -0.1733 15 1 5.1740 0.4020 -0.8331 16 6 4.1350 -0.8278 0.5913 17 7 4.7260 -1.9477 0.2464 18 14 3.0426 -0.7762 2.1058 19 1 1.6717 -1.2165 1.7425 20 1 3.5944 -1.6818 3.1452 21 1 2.9933 0.6111 2.6335 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.0771 5.7011 0.1341 26 1 4.3395 6.6311 0.0088 27 1 6.2872 5.1414 -0.1655 28 1 4.5960 -2.7485 0.7781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:56 Heat of formation + Delta-G solvation = 41.195233 kcal Electronic energy + Delta-G solvation = -16526.656876 eV Core-core repulsion = 13827.905246 eV Total energy + Delta-G solvation = -2698.751630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13914 -37.77462 -35.61963 -34.48273 -32.53826 -30.81580 -28.89078 -26.67822 -25.50205 -22.80202 -22.58353 -19.85023 -18.84021 -17.37965 -16.67844 -15.64866 -15.44462 -15.06679 -14.70501 -14.36192 -13.60218 -13.53543 -13.29593 -12.78052 -12.45774 -12.26027 -12.04508 -11.83911 -11.60588 -11.30741 -11.15457 -11.01895 -10.47528 -10.35050 -10.04878 -9.70948 -9.50675 -8.97991 -8.71387 -7.47198 -6.92605 -6.73309 -4.31372 1.10927 1.49530 2.21672 2.75378 3.03610 3.24624 3.36019 3.42087 3.53420 3.63984 4.17822 4.40744 4.46120 4.59336 5.05326 5.18810 5.35960 5.48213 5.64112 5.69088 5.79182 5.92720 6.00812 6.27310 6.50476 6.65094 6.68660 7.11957 7.31417 7.38958 8.12677 8.29064 8.33372 8.58065 8.90582 10.27739 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.012068 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.154245 B = 2319.555747 C = 3511.345775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.262 6.262 3 C -0.150 4.150 4 S -0.002 6.002 5 C -0.135 4.135 6 C -0.062 4.062 7 C -0.130 4.130 8 C -0.080 4.080 9 C 0.007 3.993 10 C 0.267 3.733 11 N -0.419 5.419 12 C 0.004 3.996 13 C 0.035 3.965 14 C -0.428 4.428 15 H 0.094 0.906 16 C 0.100 3.900 17 N -0.812 5.812 18 Si 0.911 3.089 19 H -0.248 1.248 20 H -0.297 1.297 21 H -0.261 1.261 22 H 0.089 0.911 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 11.121 1.236 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.177 6.177 3 C -0.307 4.307 4 S 0.258 5.742 5 C -0.250 4.250 6 C -0.086 4.086 7 C -0.151 4.151 8 C -0.104 4.104 9 C 0.002 3.998 10 C -0.048 4.048 11 N -0.094 5.094 12 C -0.007 4.007 13 C 0.026 3.974 14 C -0.460 4.460 15 H 0.112 0.888 16 C -0.118 4.118 17 N -0.438 5.438 18 Si 0.738 3.262 19 H -0.173 1.173 20 H -0.225 1.225 21 H -0.185 1.185 22 H 0.107 0.893 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.689 9.892 1.225 12.004 hybrid contribution 0.232 -0.255 0.640 0.727 sum -6.458 9.636 1.865 11.749 Atomic orbital electron populations 1.22839 0.81216 1.02652 1.00248 1.85931 1.17993 1.22923 1.90872 1.22499 0.92802 0.85516 1.29925 1.83180 1.07693 0.99580 1.83776 1.22063 0.96453 0.96633 1.09843 1.20568 0.97414 0.91818 0.98799 1.20656 0.91479 0.99338 1.03618 1.20834 0.99420 0.90774 0.99342 1.15832 0.86888 0.90521 1.06518 1.25330 0.92528 0.92878 0.94095 1.81119 1.12861 1.07297 1.08143 1.19304 0.90717 0.93606 0.97102 1.16990 0.89541 0.90249 1.00658 1.18651 1.08741 0.96532 1.22093 0.88803 1.25860 0.93746 0.93648 0.98593 1.69888 1.37511 1.00198 1.36176 0.86218 0.81151 0.79270 0.79547 1.17314 1.22493 1.18477 0.89294 0.94074 0.93506 0.85966 0.85198 0.85270 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.96 101.05 1.01 1.49 15 2 O -0.26 -6.09 6.12 -17.21 -0.11 -6.19 15 3 C -0.15 -3.50 5.70 30.53 0.17 -3.33 15 4 S 0.00 -0.03 21.85 -107.50 -2.35 -2.38 15 5 C -0.13 -2.52 6.40 -38.65 -0.25 -2.77 15 6 C -0.06 -0.89 10.05 -39.14 -0.39 -1.28 15 7 C -0.13 -1.65 10.01 -39.74 -0.40 -2.05 15 8 C -0.08 -1.16 9.71 -39.33 -0.38 -1.54 15 9 C 0.01 0.14 5.79 -106.15 -0.61 -0.47 15 10 C 0.27 5.75 12.76 -22.47 -0.29 5.47 15 11 N -0.42 -9.80 18.05 41.84 0.76 -9.05 15 12 C 0.00 0.09 5.99 -104.81 -0.63 -0.54 15 13 C 0.04 0.88 4.84 -105.95 -0.51 0.37 15 14 C -0.43 -11.96 8.27 -38.14 -0.32 -12.28 15 15 H 0.09 2.80 6.35 -52.48 -0.33 2.47 15 16 C 0.10 2.78 5.14 -17.31 -0.09 2.69 15 17 N -0.81 -23.23 13.95 55.53 0.77 -22.46 15 18 Si 0.91 22.36 24.63 -169.99 -4.19 18.18 15 19 H -0.25 -5.79 5.83 56.52 0.33 -5.46 15 20 H -0.30 -7.11 7.11 56.52 0.40 -6.71 15 21 H -0.26 -6.51 7.11 56.52 0.40 -6.11 15 22 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.04 0.67 7.94 -51.93 -0.41 0.26 15 24 H 0.05 0.74 8.09 -51.93 -0.42 0.32 15 25 H 0.12 1.41 8.06 -52.49 -0.42 0.98 15 26 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.28 7.36 8.30 -40.82 -0.34 7.02 15 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -30.78 262.28 -5.91 -36.69 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -2.06 Total: -4.50 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.69 Total: -14.24 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 1.53 Total: -31.50 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.11 Total: -6.19 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.19 Total: 18.18 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.35 Total: -2.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.78 -5.91 -36.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.883 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds