Wall clock time and date at job start Mon Mar 30 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35172 * 117.00362 * 2 1 4 4 S 1.75193 * 124.60539 * 4.21027 * 3 2 1 5 5 C 1.75909 * 92.72307 * 180.18674 * 4 3 2 6 6 C 1.39745 * 129.64267 * 179.79994 * 5 4 3 7 7 C 1.37894 * 120.84914 * 180.02562 * 6 5 4 8 8 C 1.38157 * 120.32058 * 0.02562 * 7 6 5 9 9 C 1.38993 * 120.06350 * 359.93053 * 8 7 6 10 10 C 1.43196 * 119.95654 * 180.02562 * 9 8 7 11 11 N 6.00784 * 162.34405 * 349.93327 * 2 1 3 12 12 C 1.39218 * 110.61807 * 359.82778 * 5 4 3 13 13 C 1.37692 * 124.61432 * 184.06516 * 3 2 1 14 14 C 1.40772 * 123.22158 * 0.02562 * 13 3 2 15 15 H 1.08008 * 119.99501 * 139.55151 * 14 13 3 16 16 C 1.39543 * 120.00642 * 319.27362 * 14 13 3 17 17 N 1.31248 * 120.00394 * 160.17902 * 16 14 13 18 18 Si 1.86806 * 119.99919 * 340.18765 * 16 14 13 19 19 H 1.48496 * 109.47120 * 94.78901 * 18 16 14 20 20 H 1.48491 * 109.47090 * 214.79357 * 18 16 14 21 21 H 1.48504 * 109.46767 * 334.79394 * 18 16 14 22 22 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46924 * 299.99805 * 1 2 3 24 24 H 1.09002 * 109.47293 * 59.99846 * 1 2 3 25 25 H 1.08002 * 119.58032 * 0.02562 * 6 5 4 26 26 H 1.07998 * 119.84013 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.96307 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00137 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0427 1.2043 0.0000 4 16 1.2132 2.7438 0.1059 5 6 2.7166 3.6541 0.0319 6 6 2.9245 5.0358 0.0580 7 6 4.1977 5.5607 -0.0123 8 6 5.2926 4.7240 -0.1105 9 6 5.1155 3.3457 -0.1376 10 6 6.2521 2.4805 -0.2389 11 7 7.1538 1.7941 -0.3185 12 6 3.8065 2.7935 -0.0662 13 6 3.4050 1.3880 -0.0803 14 6 4.3225 0.3244 -0.1733 15 1 5.1740 0.4020 -0.8331 16 6 4.1350 -0.8278 0.5913 17 7 4.7260 -1.9477 0.2464 18 14 3.0426 -0.7762 2.1058 19 1 1.6717 -1.2165 1.7425 20 1 3.5944 -1.6818 3.1452 21 1 2.9933 0.6111 2.6335 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.0771 5.7011 0.1341 26 1 4.3395 6.6311 0.0088 27 1 6.2872 5.1414 -0.1655 28 1 4.5960 -2.7485 0.7781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:56 Heat of formation + Delta-G solvation = 20.744208 kcal Electronic energy + Delta-G solvation = -16527.543699 eV Core-core repulsion = 13827.905246 eV Total energy + Delta-G solvation = -2699.638453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57331 -39.45654 -37.28587 -36.16595 -34.33299 -32.16888 -30.42254 -28.27497 -27.14445 -24.26184 -24.03572 -21.53780 -20.33671 -19.24622 -18.22530 -17.18442 -16.96976 -16.55473 -16.34138 -15.93239 -15.25143 -15.00866 -14.87786 -14.52012 -13.93394 -13.89491 -13.71437 -13.40779 -13.17282 -12.87881 -12.73885 -12.55715 -12.05010 -12.01716 -11.83689 -11.31374 -11.10280 -10.86546 -10.21628 -8.92759 -8.74328 -8.56173 -6.29843 -0.29762 0.17401 0.69992 1.07321 1.18348 1.31235 1.41274 1.65472 1.89077 2.07515 2.23496 2.77740 2.87328 3.13175 3.19139 4.07582 4.13855 4.26859 4.30973 4.36738 4.51199 4.62011 4.78376 4.98882 5.10535 5.37971 5.43405 5.50539 5.54527 5.94146 6.25417 6.39184 6.68176 6.73913 6.94361 8.35617 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.012068 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.154245 B = 2319.555747 C = 3511.345775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.297 6.297 3 C -0.135 4.135 4 S 0.058 5.942 5 C -0.154 4.154 6 C -0.044 4.044 7 C -0.104 4.104 8 C -0.053 4.053 9 C -0.028 4.028 10 C 0.280 3.720 11 N -0.475 5.475 12 C -0.033 4.033 13 C -0.003 4.003 14 C -0.462 4.462 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.873 5.873 18 Si 0.957 3.043 19 H -0.229 1.229 20 H -0.295 1.295 21 H -0.268 1.268 22 H 0.110 0.890 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.166 0.834 26 H 0.190 0.810 27 H 0.164 0.836 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 15.970 1.938 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.212 6.212 3 C -0.293 4.293 4 S 0.318 5.682 5 C -0.269 4.269 6 C -0.068 4.068 7 C -0.124 4.124 8 C -0.076 4.076 9 C -0.034 4.034 10 C -0.033 4.033 11 N -0.151 5.151 12 C -0.044 4.044 13 C -0.013 4.013 14 C -0.495 4.495 15 H 0.070 0.930 16 C -0.154 4.154 17 N -0.504 5.504 18 Si 0.782 3.218 19 H -0.154 1.154 20 H -0.223 1.223 21 H -0.193 1.193 22 H 0.129 0.871 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.184 0.816 26 H 0.207 0.793 27 H 0.182 0.818 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.510 14.765 1.923 17.667 hybrid contribution 0.915 -1.366 0.319 1.674 sum -8.596 13.399 2.242 16.076 Atomic orbital electron populations 1.23237 0.78226 1.04813 1.01839 1.85895 1.21216 1.23657 1.90481 1.23122 0.93740 0.87817 1.24647 1.82811 1.06595 0.95514 1.83325 1.22416 0.95178 0.98343 1.10963 1.21176 0.99866 0.90039 0.95711 1.21352 0.89629 1.01794 0.99611 1.21380 1.02217 0.88489 0.95465 1.16175 0.85135 0.92263 1.09779 1.25984 0.92477 0.92297 0.92575 1.81090 1.15035 1.08438 1.10562 1.19232 0.92722 0.92371 1.00113 1.17321 0.90150 0.91761 1.02083 1.18517 1.09094 0.98487 1.23424 0.93012 1.26520 0.94999 0.93318 1.00549 1.69963 1.41317 1.00959 1.38115 0.85541 0.80746 0.78573 0.76931 1.15368 1.22274 1.19263 0.87141 0.92413 0.91745 0.81643 0.79308 0.81817 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 9.96 113.37 1.13 1.61 15 2 O -0.30 -13.62 6.12 -84.51 -0.52 -14.14 15 3 C -0.14 -6.24 5.70 67.69 0.39 -5.86 15 4 S 0.06 2.01 21.85 -56.49 -1.23 0.78 15 5 C -0.15 -5.19 6.40 22.87 0.15 -5.05 15 6 C -0.04 -0.98 10.05 22.55 0.23 -0.75 15 7 C -0.10 -1.84 10.01 22.17 0.22 -1.62 15 8 C -0.05 -1.28 9.71 22.43 0.22 -1.06 15 9 C -0.03 -1.07 5.79 -20.86 -0.12 -1.19 15 10 C 0.28 12.66 12.76 88.33 1.13 13.78 15 11 N -0.47 -23.85 18.05 19.00 0.34 -23.50 15 12 C -0.03 -1.42 5.99 -19.98 -0.12 -1.54 15 13 C 0.00 -0.16 4.84 -20.73 -0.10 -0.26 15 14 C -0.46 -27.67 8.27 23.20 0.19 -27.48 15 15 H 0.05 3.41 6.35 -2.91 -0.02 3.40 15 16 C 0.06 3.40 5.14 85.09 0.44 3.83 15 17 N -0.87 -54.14 13.95 21.78 0.30 -53.84 15 18 Si 0.96 47.69 24.63 68.60 1.69 49.38 15 19 H -0.23 -10.50 5.83 99.48 0.58 -9.92 15 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 15 21 H -0.27 -13.40 7.11 99.48 0.71 -12.69 15 22 H 0.11 3.08 8.14 -2.38 -0.02 3.06 15 23 H 0.06 1.68 7.94 -2.39 -0.02 1.66 15 24 H 0.06 1.85 8.09 -2.39 -0.02 1.84 15 25 H 0.17 2.35 8.06 -2.91 -0.02 2.32 15 26 H 0.19 1.39 8.06 -2.91 -0.02 1.37 15 27 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 28 H 0.28 16.03 8.30 -92.71 -0.77 15.26 15 Total: -1.00 -76.72 262.28 5.41 -71.31 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: 1.08 Total: -4.40 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.74 Total: -25.58 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: 0.65 Total: -77.34 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.52 Total: -14.14 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.69 Total: 49.38 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.23 Total: 0.78 kcal Total: -76.72 5.41 -71.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.054 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds