Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35746 * 116.99747 * 2 1 4 4 C 1.38860 * 120.03838 * 359.97438 * 3 2 1 5 5 C 1.37590 * 120.33187 * 180.02562 * 4 3 2 6 6 C 1.39971 * 120.85526 * 359.97438 * 5 4 3 7 7 S 1.75837 * 130.02868 * 180.02562 * 6 5 4 8 8 C 1.69988 * 93.20343 * 179.97438 * 7 6 5 9 9 C 1.36614 * 111.86046 * 359.97438 * 8 7 6 10 10 C 1.40915 * 123.29689 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99751 * 154.09725 * 10 9 8 12 12 C 1.39696 * 119.99704 * 334.09110 * 10 9 8 13 13 N 1.31085 * 120.00310 * 350.48227 * 12 10 9 14 14 Si 1.86800 * 119.99708 * 170.48294 * 12 10 9 15 15 H 1.48503 * 109.47078 * 94.78258 * 14 12 10 16 16 H 1.48493 * 109.47349 * 214.78452 * 14 12 10 17 17 H 1.48507 * 109.47040 * 334.78685 * 14 12 10 18 18 C 1.39100 * 119.80491 * 0.02562 * 6 5 4 19 19 C 1.39557 * 120.04071 * 180.02562 * 3 2 1 20 20 C 1.43205 * 120.04660 * 0.02562 * 19 3 2 21 21 N 3.52053 * 165.72641 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47880 * 300.00244 * 1 2 3 24 24 H 1.08998 * 109.47113 * 60.00501 * 1 2 3 25 25 H 1.08000 * 119.83641 * 0.04433 * 4 3 2 26 26 H 1.07994 * 119.57203 * 179.72540 * 5 4 3 27 27 H 1.07999 * 124.06783 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00210 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2896 2.3746 -0.0005 5 6 1.9079 3.6037 -0.0011 6 6 3.3040 3.7051 -0.0005 7 16 4.3345 5.1298 -0.0004 8 6 5.7654 4.2121 0.0011 9 6 5.5090 2.8702 0.0021 10 6 6.5208 1.8894 0.0039 11 1 6.3225 0.9099 0.4132 12 6 7.7802 2.1841 -0.5238 13 7 7.9688 3.2996 -1.1861 14 14 9.1957 0.9887 -0.2856 15 1 9.2951 0.0971 -1.4690 16 1 10.4629 1.7468 -0.1291 17 1 8.9542 0.1716 0.9308 18 6 4.0809 2.5513 0.0000 19 6 3.4388 1.2836 -0.0005 20 6 4.2206 0.0838 -0.0016 21 7 4.8408 -0.8680 -0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.2112 2.3157 -0.0002 26 1 1.3084 4.5019 -0.0060 27 1 6.7576 4.6386 0.0012 28 1 8.8433 3.5044 -1.5522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = 28.147868 kcal Electronic energy + Delta-G solvation = -16201.885360 eV Core-core repulsion = 13502.567954 eV Total energy + Delta-G solvation = -2699.317406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.90465 -37.66183 -35.54685 -34.71453 -32.19047 -30.69617 -28.26399 -27.24038 -25.99426 -23.06375 -22.28467 -19.85087 -18.82235 -17.28917 -16.46398 -16.07909 -15.62997 -15.42511 -15.00659 -13.99607 -13.78022 -13.33795 -12.99768 -12.66949 -12.18375 -12.16178 -12.08903 -11.86525 -11.58815 -11.30524 -11.22894 -11.01511 -10.70874 -10.36193 -10.17089 -9.81575 -9.46496 -9.12771 -8.54412 -7.46525 -6.78645 -6.66002 -4.34362 1.20920 1.69254 2.65938 2.99087 3.12235 3.20610 3.40771 3.45517 3.56958 3.69355 3.82227 4.03030 4.50553 4.65762 5.00780 5.17626 5.20188 5.23299 5.40176 5.51664 5.74583 5.85165 6.25418 6.41786 6.51242 6.76389 6.97899 7.20069 7.52700 7.60500 7.87527 8.38186 8.39396 8.71851 8.85725 10.28083 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.008675 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.319071 B = 3226.815288 C = 4539.665191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.154 3.846 4 C -0.214 4.214 5 C -0.022 4.022 6 C -0.180 4.180 7 S 0.053 5.947 8 C -0.327 4.327 9 C 0.068 3.932 10 C -0.437 4.437 11 H 0.080 0.920 12 C 0.072 3.928 13 N -0.802 5.802 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.261 1.261 18 C 0.016 3.984 19 C -0.033 4.033 20 C 0.289 3.711 21 N -0.440 5.440 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.133 0.867 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 1.155 1.527 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.103 3.897 4 C -0.235 4.235 5 C -0.046 4.046 6 C -0.296 4.296 7 S 0.317 5.683 8 C -0.463 4.463 9 C 0.059 3.941 10 C -0.470 4.470 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.429 5.429 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.185 1.185 18 C 0.002 3.998 19 C -0.039 4.039 20 C -0.026 4.026 21 N -0.117 5.117 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.143 0.857 27 H 0.181 0.819 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.086 1.183 1.399 11.237 hybrid contribution 0.645 -1.461 -0.104 1.600 sum -10.441 -0.278 1.295 10.525 Atomic orbital electron populations 1.23035 0.78578 1.03638 1.01373 1.86060 1.21191 1.26857 1.88650 1.18475 0.90017 0.84390 0.96798 1.20719 0.99348 0.91318 1.12096 1.20368 0.91680 0.96946 0.95568 1.22511 0.96631 0.98302 1.12110 1.81933 0.97604 1.07903 1.80887 1.24445 0.99637 0.95738 1.26492 1.17261 0.87457 0.93017 0.96365 1.19144 0.94633 0.98889 1.34311 0.90153 1.25698 0.99767 0.95926 0.92986 1.69835 1.24004 1.23009 1.26055 0.86277 0.79848 0.80610 0.80056 1.19565 1.20082 1.18463 1.19445 0.95012 0.89321 0.96003 1.14956 0.87502 0.87406 1.14033 1.25036 0.92250 0.91981 0.93284 1.81028 1.08671 1.12310 1.09650 0.88581 0.92580 0.92569 0.84926 0.85691 0.81891 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 15 2 O -0.31 -4.95 9.90 -18.95 -0.19 -5.14 15 3 C 0.15 2.68 6.67 -38.86 -0.26 2.42 15 4 C -0.21 -3.09 9.00 -39.59 -0.36 -3.44 15 5 C -0.02 -0.34 10.04 -39.17 -0.39 -0.74 15 6 C -0.18 -3.60 6.43 -38.61 -0.25 -3.85 15 7 S 0.05 1.08 22.96 -107.50 -2.47 -1.39 15 8 C -0.33 -8.12 9.49 30.15 0.29 -7.84 15 9 C 0.07 1.76 5.66 -106.22 -0.60 1.16 15 10 C -0.44 -11.88 8.37 -38.02 -0.32 -12.19 15 11 H 0.08 2.21 5.36 -52.49 -0.28 1.93 15 12 C 0.07 1.89 5.36 -17.33 -0.09 1.79 15 13 N -0.80 -21.13 10.93 55.54 0.61 -20.53 15 14 Si 0.91 20.39 29.57 -169.99 -5.03 15.36 15 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 17 H -0.26 -5.94 7.11 56.52 0.40 -5.54 15 18 C 0.02 0.37 6.01 -104.84 -0.63 -0.26 15 19 C -0.03 -0.70 5.80 -106.00 -0.62 -1.32 15 20 C 0.29 6.66 12.33 -22.47 -0.28 6.39 15 21 N -0.44 -10.59 17.83 41.84 0.75 -9.84 15 22 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 0.47 7.66 -51.93 -0.40 0.07 15 24 H 0.06 0.47 7.66 -51.93 -0.40 0.08 15 25 H 0.13 1.39 6.28 -52.49 -0.33 1.06 15 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.16 4.31 6.46 -52.49 -0.34 3.97 15 28 H 0.28 6.72 8.30 -40.82 -0.34 6.39 15 LS Contribution 265.41 15.07 4.00 4.00 Total: -1.00 -29.37 265.41 -6.57 -35.94 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -1.72 Total: -1.80 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.51 Total: -16.61 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 1.35 Total: -30.37 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.19 Total: -5.14 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.47 Total: -1.39 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.37 -6.57 -35.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.085 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds