Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35746 * 116.99747 * 2 1 4 4 C 1.38860 * 120.03838 * 359.97438 * 3 2 1 5 5 C 1.37590 * 120.33187 * 180.02562 * 4 3 2 6 6 C 1.39971 * 120.85526 * 359.97438 * 5 4 3 7 7 S 1.75837 * 130.02868 * 180.02562 * 6 5 4 8 8 C 1.69988 * 93.20343 * 179.97438 * 7 6 5 9 9 C 1.36614 * 111.86046 * 359.97438 * 8 7 6 10 10 C 1.40915 * 123.29689 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99751 * 154.09725 * 10 9 8 12 12 C 1.39696 * 119.99704 * 334.09110 * 10 9 8 13 13 N 1.31085 * 120.00310 * 350.48227 * 12 10 9 14 14 Si 1.86800 * 119.99708 * 170.48294 * 12 10 9 15 15 H 1.48503 * 109.47078 * 94.78258 * 14 12 10 16 16 H 1.48493 * 109.47349 * 214.78452 * 14 12 10 17 17 H 1.48507 * 109.47040 * 334.78685 * 14 12 10 18 18 C 1.39100 * 119.80491 * 0.02562 * 6 5 4 19 19 C 1.39557 * 120.04071 * 180.02562 * 3 2 1 20 20 C 1.43205 * 120.04660 * 0.02562 * 19 3 2 21 21 N 3.52053 * 165.72641 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47880 * 300.00244 * 1 2 3 24 24 H 1.08998 * 109.47113 * 60.00501 * 1 2 3 25 25 H 1.08000 * 119.83641 * 0.04433 * 4 3 2 26 26 H 1.07994 * 119.57203 * 179.72540 * 5 4 3 27 27 H 1.07999 * 124.06783 * 179.97438 * 8 7 6 28 28 H 0.96996 * 120.00210 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2896 2.3746 -0.0005 5 6 1.9079 3.6037 -0.0011 6 6 3.3040 3.7051 -0.0005 7 16 4.3345 5.1298 -0.0004 8 6 5.7654 4.2121 0.0011 9 6 5.5090 2.8702 0.0021 10 6 6.5208 1.8894 0.0039 11 1 6.3225 0.9099 0.4132 12 6 7.7802 2.1841 -0.5238 13 7 7.9688 3.2996 -1.1861 14 14 9.1957 0.9887 -0.2856 15 1 9.2951 0.0971 -1.4690 16 1 10.4629 1.7468 -0.1291 17 1 8.9542 0.1716 0.9308 18 6 4.0809 2.5513 0.0000 19 6 3.4388 1.2836 -0.0005 20 6 4.2206 0.0838 -0.0016 21 7 4.8408 -0.8680 -0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.2112 2.3157 -0.0002 26 1 1.3084 4.5019 -0.0060 27 1 6.7576 4.6386 0.0012 28 1 8.8433 3.5044 -1.5522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = 10.382203 kcal Electronic energy + Delta-G solvation = -16202.655737 eV Core-core repulsion = 13502.567954 eV Total energy + Delta-G solvation = -2700.087783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23774 -39.07432 -37.28716 -36.43018 -33.93175 -32.10912 -29.86790 -28.27661 -27.73208 -24.58971 -23.79579 -21.48194 -20.35337 -18.80313 -18.09910 -17.60766 -16.87392 -16.74353 -16.68735 -15.50787 -15.19947 -14.87896 -14.52014 -14.17699 -13.88801 -13.81855 -13.75954 -13.43140 -13.20456 -12.85624 -12.61643 -12.52237 -12.18711 -12.06048 -11.76909 -11.42967 -11.21329 -10.88618 -10.07885 -9.03762 -8.64624 -8.38196 -6.29145 -0.28599 0.26078 1.12649 1.17953 1.26116 1.38879 1.79370 1.86027 1.93921 2.03877 2.16685 2.29392 2.83291 3.12276 3.29927 3.89802 4.12455 4.35294 4.42377 4.51077 4.54990 4.82588 4.86061 4.99632 5.18392 5.21500 5.28791 5.54402 5.69548 5.93912 6.37386 6.44842 6.67526 6.80856 6.89853 8.36740 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.008675 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.319071 B = 3226.815288 C = 4539.665191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.336 6.336 3 C 0.177 3.823 4 C -0.188 4.188 5 C -0.002 4.002 6 C -0.194 4.194 7 S 0.103 5.897 8 C -0.350 4.350 9 C 0.039 3.961 10 C -0.472 4.472 11 H 0.065 0.935 12 C 0.034 3.966 13 N -0.830 5.830 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.255 1.255 17 H -0.271 1.271 18 C -0.019 4.019 19 C -0.076 4.076 20 C 0.295 3.705 21 N -0.481 5.481 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.190 0.810 26 H 0.174 0.826 27 H 0.138 0.862 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 1.923 1.582 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.249 6.249 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.025 4.025 6 C -0.309 4.309 7 S 0.366 5.634 8 C -0.486 4.486 9 C 0.030 3.970 10 C -0.506 4.506 11 H 0.084 0.916 12 C -0.179 4.179 13 N -0.458 5.458 14 Si 0.784 3.216 15 H -0.196 1.196 16 H -0.179 1.179 17 H -0.195 1.195 18 C -0.032 4.032 19 C -0.082 4.082 20 C -0.018 4.018 21 N -0.159 5.159 22 H 0.133 0.867 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.207 0.793 26 H 0.191 0.809 27 H 0.155 0.845 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.974 1.957 1.455 15.171 hybrid contribution 1.518 -1.714 -0.097 2.292 sum -13.455 0.243 1.358 13.526 Atomic orbital electron populations 1.23536 0.75053 1.05904 1.03584 1.86069 1.24756 1.26290 1.87830 1.18621 0.88736 0.86239 0.93881 1.21321 1.01763 0.89276 1.08547 1.20955 0.89771 0.99424 0.92351 1.22810 0.98486 0.96784 1.12844 1.81409 0.94617 1.06636 1.80737 1.24425 1.01145 0.96710 1.26327 1.17635 0.89475 0.93310 0.96626 1.19300 0.96258 0.98958 1.36084 0.91645 1.26347 1.01441 0.97385 0.92695 1.69891 1.24755 1.24125 1.27015 0.85493 0.78109 0.78810 0.79225 1.19590 1.17928 1.19531 1.19342 0.93889 0.91198 0.98761 1.15204 0.89402 0.85977 1.17666 1.25620 0.91786 0.92188 0.92221 1.80977 1.09508 1.13741 1.11624 0.86729 0.90150 0.90273 0.79266 0.80873 0.84491 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 15 2 O -0.34 -9.49 9.90 -90.71 -0.90 -10.38 15 3 C 0.18 5.59 6.67 22.74 0.15 5.74 15 4 C -0.19 -4.30 9.00 22.27 0.20 -4.10 15 5 C 0.00 -0.05 10.04 22.54 0.23 0.17 15 6 C -0.19 -7.34 6.43 22.90 0.15 -7.19 15 7 S 0.10 4.06 22.96 -56.49 -1.30 2.76 15 8 C -0.35 -18.08 9.49 67.44 0.64 -17.44 15 9 C 0.04 2.12 5.66 -20.90 -0.12 2.00 15 10 C -0.47 -27.28 8.37 23.28 0.19 -27.09 15 11 H 0.07 3.85 5.36 -2.91 -0.02 3.84 15 12 C 0.03 1.88 5.36 85.16 0.46 2.34 15 13 N -0.83 -45.86 10.93 21.79 0.24 -45.63 15 14 Si 0.96 43.80 29.57 68.60 2.03 45.83 15 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 18 C -0.02 -0.86 6.01 -20.01 -0.12 -0.98 15 19 C -0.08 -3.24 5.80 -20.76 -0.12 -3.36 15 20 C 0.29 14.14 12.33 88.33 1.09 15.22 15 21 N -0.48 -24.26 17.83 19.01 0.34 -23.93 15 22 H 0.11 1.26 8.14 -2.38 -0.02 1.24 15 23 H 0.08 0.81 7.66 -2.39 -0.02 0.79 15 24 H 0.08 0.82 7.66 -2.39 -0.02 0.80 15 25 H 0.19 2.26 6.28 -2.91 -0.02 2.24 15 26 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.14 7.68 6.46 -2.91 -0.02 7.66 15 28 H 0.28 14.30 8.30 -92.71 -0.77 13.53 15 Total: -1.00 -70.59 265.41 5.49 -65.10 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.22 Total: -0.37 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.86 Total: -33.38 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: 0.58 Total: -69.55 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.90 Total: -10.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.30 Total: 2.76 kcal Total: -70.59 5.49 -65.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.480 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds