Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.47526 * 120.12622 * 64.45642 * 3 2 1 5 5 C 1.39935 * 128.94737 * 0.02562 * 4 3 2 6 6 C 1.32770 * 115.89258 * 180.02562 * 5 4 3 7 7 S 1.75487 * 110.75533 * 359.97438 * 6 5 4 8 8 C 1.40316 * 118.52188 * 180.02562 * 4 3 2 9 9 C 1.38768 * 120.26538 * 359.73560 * 8 4 3 10 10 C 1.40264 * 121.01177 * 0.54448 * 9 8 4 11 11 C 1.41102 * 119.80372 * 179.71419 * 10 9 8 12 12 H 1.07991 * 120.00189 * 152.58275 * 11 10 9 13 13 C 1.39853 * 119.99570 * 332.57995 * 11 10 9 14 14 N 1.30898 * 120.00356 * 343.61647 * 13 11 10 15 15 Si 1.86797 * 119.99963 * 163.61670 * 13 11 10 16 16 H 1.48505 * 109.47256 * 89.99821 * 15 13 11 17 17 H 1.48503 * 109.47508 * 209.99779 * 15 13 11 18 18 H 1.48498 * 109.47146 * 330.00030 * 15 13 11 19 19 C 1.37976 * 120.12204 * 244.46653 * 3 2 1 20 20 C 1.50700 * 119.97745 * 359.97438 * 19 3 2 21 21 O 1.42900 * 109.46627 * 269.97228 * 20 19 3 22 22 H 1.08003 * 122.05509 * 359.97438 * 5 4 3 23 23 H 1.07995 * 124.62420 * 179.97438 * 6 5 4 24 24 H 1.08002 * 119.49712 * 180.27842 * 9 8 4 25 25 H 0.96999 * 120.00153 * 180.02562 * 14 13 11 26 26 H 1.08996 * 109.46870 * 29.96864 * 20 19 3 27 27 H 1.09003 * 109.47112 * 149.97602 * 20 19 3 28 28 H 0.96705 * 113.99987 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3087 -0.5492 -1.1513 5 6 2.8092 -1.1126 -2.3308 6 6 3.7179 -1.5303 -3.2040 7 16 5.3399 -1.2414 -2.5997 8 6 4.7113 -0.5322 -1.1156 9 6 5.3766 -0.0023 -0.0191 10 6 4.6682 0.5142 1.0757 11 6 5.3707 1.0414 2.1801 12 1 4.9179 1.8069 2.7926 13 6 6.6534 0.5725 2.4813 14 7 7.0778 -0.5520 1.9628 15 14 7.7612 1.5510 3.6235 16 1 7.5409 1.1101 5.0244 17 1 9.1807 1.3243 3.2507 18 1 7.4427 2.9965 3.5037 19 6 3.2602 0.5154 1.0769 20 6 2.5087 1.0787 2.2554 21 8 2.2718 2.4724 2.0471 22 1 1.7495 -1.2029 -2.5189 23 1 3.4900 -1.9857 -4.1563 24 1 6.4565 0.0086 -0.0067 25 1 7.9673 -0.8774 2.1720 26 1 1.5559 0.5599 2.3604 27 1 3.0988 0.9419 3.1617 28 1 1.7908 2.9016 2.7679 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212863.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = 12.307323 kcal Electronic energy + Delta-G solvation = -16197.435563 eV Core-core repulsion = 13497.431260 eV Total energy + Delta-G solvation = -2700.004304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.78958 -36.36191 -35.85354 -35.01498 -33.13401 -30.48021 -29.38749 -26.21586 -24.79916 -22.75000 -21.81802 -19.27348 -18.70162 -16.89451 -16.81769 -15.86226 -15.26880 -15.12301 -14.46431 -13.75978 -13.51959 -13.35901 -12.72455 -12.54214 -12.42731 -12.30377 -12.17952 -11.92750 -11.57692 -11.32423 -11.02863 -10.88042 -10.38978 -10.29822 -10.05935 -9.71833 -9.43000 -9.29263 -8.61538 -7.55782 -7.14508 -6.92140 -4.67495 1.32688 2.09269 2.48959 2.79804 2.87823 2.91591 2.96625 3.23150 3.29556 3.66759 3.75813 4.32948 4.68067 4.87210 5.28673 5.48475 5.77105 5.83996 5.94956 6.04950 6.40424 6.51765 6.68949 6.74300 6.82435 6.97643 7.25025 7.38979 7.47781 7.65637 8.07406 8.09513 8.14807 8.40450 8.42073 9.78545 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.009230 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.093945 B = 3032.996357 C = 4514.246454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.280 3.720 3 C 0.031 3.969 4 C -0.170 4.170 5 C -0.080 4.080 6 C -0.253 4.253 7 S 0.022 5.978 8 C -0.071 4.071 9 C -0.133 4.133 10 C 0.129 3.871 11 C -0.427 4.427 12 H 0.094 0.906 13 C 0.071 3.929 14 N -0.770 5.770 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.256 1.256 19 C -0.100 4.100 20 C 0.125 3.875 21 O -0.564 6.564 22 H 0.119 0.881 23 H 0.149 0.851 24 H 0.129 0.871 25 H 0.290 0.710 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 0.702 0.097 0.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.033 4.033 3 C 0.025 3.975 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.387 4.387 7 S 0.283 5.717 8 C -0.186 4.186 9 C -0.159 4.159 10 C 0.122 3.878 11 C -0.455 4.455 12 H 0.112 0.888 13 C -0.151 4.151 14 N -0.393 5.393 15 Si 0.738 3.262 16 H -0.191 1.191 17 H -0.197 1.197 18 H -0.180 1.180 19 C -0.104 4.104 20 C 0.048 3.952 21 O -0.368 6.368 22 H 0.136 0.864 23 H 0.167 0.833 24 H 0.147 0.853 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.532 0.068 -1.135 1.255 hybrid contribution -0.712 0.521 1.436 1.685 sum -0.180 0.589 0.302 0.686 Atomic orbital electron populations 1.81081 1.12302 1.10839 1.09355 1.25966 0.92966 0.92200 0.92193 1.16486 0.82304 1.03802 0.94915 1.18248 0.91516 1.12398 0.95592 1.19589 0.99230 0.99074 0.93164 1.24620 0.95344 1.14097 1.04613 1.83746 1.08148 1.65935 1.13877 1.22218 0.95001 1.03367 0.98025 1.20573 0.99887 1.04807 0.90678 1.17037 0.88786 0.89780 0.92165 1.19721 0.98637 1.17774 1.09370 0.88837 1.26052 0.98358 0.94167 0.96498 1.69812 1.18873 1.15539 1.35066 0.86173 0.78863 0.81227 0.79944 1.19124 1.19704 1.17958 1.19589 0.94004 1.02787 0.94049 1.20861 0.96429 0.81130 0.96778 1.86634 1.79712 1.22627 1.47859 0.86365 0.83324 0.85334 0.89921 0.94864 0.91405 0.78706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.59 18.54 41.84 0.78 -8.82 15 2 C 0.28 5.83 13.45 -22.47 -0.30 5.53 15 3 C 0.03 0.67 5.93 -104.28 -0.62 0.06 15 4 C -0.17 -3.70 6.02 -104.69 -0.63 -4.33 15 5 C -0.08 -1.56 9.76 -40.82 -0.40 -1.96 15 6 C -0.25 -4.53 11.11 28.86 0.32 -4.21 15 7 S 0.02 0.42 23.29 -107.50 -2.50 -2.08 15 8 C -0.07 -1.58 6.46 -38.60 -0.25 -1.83 15 9 C -0.13 -3.12 8.63 -38.62 -0.33 -3.46 15 10 C 0.13 3.02 5.53 -107.08 -0.59 2.42 15 11 C -0.43 -9.62 8.03 -37.89 -0.30 -9.92 15 12 H 0.09 2.01 6.87 -52.49 -0.36 1.65 15 13 C 0.07 1.52 5.12 -17.35 -0.09 1.43 15 14 N -0.77 -17.31 11.03 55.54 0.61 -16.69 15 15 Si 0.91 16.20 29.59 -169.99 -5.03 11.17 15 16 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 17 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 18 H -0.26 -4.56 7.11 56.52 0.40 -4.15 15 19 C -0.10 -2.19 5.58 -103.75 -0.58 -2.77 15 20 C 0.13 2.35 6.11 36.01 0.22 2.57 15 21 O -0.56 -10.16 13.64 -35.23 -0.48 -10.64 15 22 H 0.12 2.11 8.01 -52.48 -0.42 1.69 15 23 H 0.15 2.19 8.06 -52.49 -0.42 1.76 15 24 H 0.13 3.10 6.22 -52.49 -0.33 2.77 15 25 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 26 H 0.03 0.59 7.04 -51.93 -0.37 0.23 15 27 H 0.07 1.21 6.75 -51.93 -0.35 0.86 15 28 H 0.37 4.54 9.12 45.56 0.42 4.95 15 LS Contribution 269.52 15.07 4.06 4.06 Total: -1.00 -25.70 269.52 -7.09 -32.78 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -0.97 Total: 6.69 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.56 Total: -16.47 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 1.39 Total: -25.51 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.48 Total: -10.64 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.50 Total: -2.08 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -25.70 -7.09 -32.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212863.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.091 kcal (2) G-P(sol) polarization free energy of solvation -25.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds