Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.47526 * 120.12622 * 64.45642 * 3 2 1 5 5 C 1.39935 * 128.94737 * 0.02562 * 4 3 2 6 6 C 1.32770 * 115.89258 * 180.02562 * 5 4 3 7 7 S 1.75487 * 110.75533 * 359.97438 * 6 5 4 8 8 C 1.40316 * 118.52188 * 180.02562 * 4 3 2 9 9 C 1.38768 * 120.26538 * 359.73560 * 8 4 3 10 10 C 1.40264 * 121.01177 * 0.54448 * 9 8 4 11 11 C 1.41102 * 119.80372 * 179.71419 * 10 9 8 12 12 H 1.07991 * 120.00189 * 152.58275 * 11 10 9 13 13 C 1.39853 * 119.99570 * 332.57995 * 11 10 9 14 14 N 1.30898 * 120.00356 * 343.61647 * 13 11 10 15 15 Si 1.86797 * 119.99963 * 163.61670 * 13 11 10 16 16 H 1.48505 * 109.47256 * 89.99821 * 15 13 11 17 17 H 1.48503 * 109.47508 * 209.99779 * 15 13 11 18 18 H 1.48498 * 109.47146 * 330.00030 * 15 13 11 19 19 C 1.37976 * 120.12204 * 244.46653 * 3 2 1 20 20 C 1.50700 * 119.97745 * 359.97438 * 19 3 2 21 21 O 1.42900 * 109.46627 * 269.97228 * 20 19 3 22 22 H 1.08003 * 122.05509 * 359.97438 * 5 4 3 23 23 H 1.07995 * 124.62420 * 179.97438 * 6 5 4 24 24 H 1.08002 * 119.49712 * 180.27842 * 9 8 4 25 25 H 0.96999 * 120.00153 * 180.02562 * 14 13 11 26 26 H 1.08996 * 109.46870 * 29.96864 * 20 19 3 27 27 H 1.09003 * 109.47112 * 149.97602 * 20 19 3 28 28 H 0.96705 * 113.99987 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3087 -0.5492 -1.1513 5 6 2.8092 -1.1126 -2.3308 6 6 3.7179 -1.5303 -3.2040 7 16 5.3399 -1.2414 -2.5997 8 6 4.7113 -0.5322 -1.1156 9 6 5.3766 -0.0023 -0.0191 10 6 4.6682 0.5142 1.0757 11 6 5.3707 1.0414 2.1801 12 1 4.9179 1.8069 2.7926 13 6 6.6534 0.5725 2.4813 14 7 7.0778 -0.5520 1.9628 15 14 7.7612 1.5510 3.6235 16 1 7.5409 1.1101 5.0244 17 1 9.1807 1.3243 3.2507 18 1 7.4427 2.9965 3.5037 19 6 3.2602 0.5154 1.0769 20 6 2.5087 1.0787 2.2554 21 8 2.2718 2.4724 2.0471 22 1 1.7495 -1.2029 -2.5189 23 1 3.4900 -1.9857 -4.1563 24 1 6.4565 0.0086 -0.0067 25 1 7.9673 -0.8774 2.1720 26 1 1.5559 0.5599 2.3604 27 1 3.0988 0.9419 3.1617 28 1 1.7908 2.9016 2.7679 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212863.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = -2.412065 kcal Electronic energy + Delta-G solvation = -16198.073844 eV Core-core repulsion = 13497.431260 eV Total energy + Delta-G solvation = -2700.642584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41065 -37.85073 -37.50411 -36.57558 -34.73536 -32.12130 -31.00857 -27.81334 -26.39326 -24.37962 -23.41441 -20.89008 -20.28943 -18.46266 -18.29157 -17.48146 -16.85514 -16.69389 -16.01944 -15.21164 -15.06701 -14.99788 -14.27505 -14.14212 -14.03552 -13.92013 -13.73398 -13.49172 -13.12758 -12.81283 -12.58260 -12.36659 -11.97393 -11.83946 -11.63007 -11.31056 -10.90017 -10.85881 -10.25317 -9.19947 -8.74822 -8.52069 -6.36706 -0.28636 0.42486 0.90354 1.32729 1.36099 1.46484 1.58787 1.64054 1.68997 2.07806 2.21633 2.70480 3.01949 3.33402 3.72652 4.00418 4.32012 4.35779 4.41311 4.61837 4.81060 4.90840 5.09820 5.16552 5.18438 5.34046 5.64134 5.77764 5.79653 5.94047 6.41152 6.43932 6.73286 6.74831 6.98391 8.21197 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.009230 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.093945 B = 3032.996357 C = 4514.246454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.289 3.711 3 C 0.017 3.983 4 C -0.176 4.176 5 C -0.103 4.103 6 C -0.227 4.227 7 S 0.044 5.956 8 C -0.099 4.099 9 C -0.153 4.153 10 C 0.104 3.896 11 C -0.450 4.450 12 H 0.098 0.902 13 C 0.038 3.962 14 N -0.803 5.803 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.257 1.257 19 C -0.110 4.110 20 C 0.133 3.867 21 O -0.579 6.579 22 H 0.135 0.865 23 H 0.189 0.811 24 H 0.114 0.886 25 H 0.295 0.705 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 0.707 -0.338 0.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.025 4.025 3 C 0.011 3.989 4 C -0.185 4.185 5 C -0.133 4.133 6 C -0.361 4.361 7 S 0.305 5.695 8 C -0.214 4.214 9 C -0.179 4.179 10 C 0.098 3.902 11 C -0.478 4.478 12 H 0.116 0.884 13 C -0.181 4.181 14 N -0.427 5.427 15 Si 0.802 3.198 16 H -0.183 1.183 17 H -0.194 1.194 18 H -0.180 1.180 19 C -0.114 4.114 20 C 0.055 3.945 21 O -0.387 6.387 22 H 0.153 0.847 23 H 0.206 0.794 24 H 0.131 0.869 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.174 0.080 -1.558 1.569 hybrid contribution -0.657 0.461 1.421 1.632 sum -0.482 0.540 -0.136 0.737 Atomic orbital electron populations 1.81082 1.12114 1.11010 1.09487 1.25751 0.92611 0.92040 0.92068 1.16607 0.82746 1.04329 0.95227 1.18633 0.91496 1.11938 0.96404 1.19733 1.00495 1.00254 0.92785 1.25141 0.94069 1.11523 1.05322 1.83662 1.08900 1.64964 1.11945 1.22512 0.95770 1.03917 0.99203 1.20516 0.99266 1.06437 0.91727 1.17340 0.89726 0.90490 0.92652 1.19912 0.99708 1.18456 1.09748 0.88448 1.26795 0.99081 0.94597 0.97601 1.69860 1.19528 1.16812 1.36460 0.85180 0.76922 0.79510 0.78195 1.18338 1.19409 1.18036 1.19947 0.93924 1.02484 0.95075 1.20748 0.96475 0.81592 0.95644 1.86560 1.80355 1.22206 1.49622 0.84691 0.79351 0.86861 0.89355 0.93969 0.90827 0.75826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.61 18.54 19.00 0.35 -18.25 15 2 C 0.29 11.76 13.45 88.33 1.19 12.95 15 3 C 0.02 0.73 5.93 -19.64 -0.12 0.62 15 4 C -0.18 -7.61 6.02 -19.91 -0.12 -7.73 15 5 C -0.10 -3.79 9.76 21.51 0.21 -3.58 15 6 C -0.23 -7.42 11.11 66.64 0.74 -6.68 15 7 S 0.04 1.63 23.29 -56.49 -1.32 0.32 15 8 C -0.10 -4.44 6.46 22.90 0.15 -4.29 15 9 C -0.15 -7.42 8.63 22.89 0.20 -7.22 15 10 C 0.10 5.00 5.53 -21.46 -0.12 4.88 15 11 C -0.45 -20.69 8.03 23.36 0.19 -20.51 15 12 H 0.10 4.24 6.87 -2.92 -0.02 4.22 15 13 C 0.04 1.64 5.12 85.22 0.44 2.08 15 14 N -0.80 -36.96 11.03 21.81 0.24 -36.72 15 15 Si 0.98 33.14 29.59 68.60 2.03 35.17 15 16 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 17 H -0.27 -8.88 7.11 99.48 0.71 -8.17 15 18 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 19 C -0.11 -4.86 5.58 -19.30 -0.11 -4.97 15 20 C 0.13 4.92 6.11 71.24 0.44 5.36 15 21 O -0.58 -20.33 13.64 -148.98 -2.03 -22.36 15 22 H 0.14 4.49 8.01 -2.91 -0.02 4.46 15 23 H 0.19 4.62 8.06 -2.91 -0.02 4.59 15 24 H 0.11 5.71 6.22 -2.91 -0.02 5.69 15 25 H 0.30 12.27 8.30 -92.71 -0.77 11.50 15 26 H 0.04 1.47 7.04 -2.39 -0.02 1.45 15 27 H 0.07 2.61 6.75 -2.39 -0.02 2.60 15 28 H 0.39 9.06 9.12 -74.05 -0.68 8.39 15 Total: -1.00 -54.68 269.52 2.91 -51.77 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.56 Total: 19.18 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.08 Total: -29.10 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.59 Total: -54.97 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -2.03 Total: -22.36 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.32 kcal Total: -54.68 2.91 -51.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212863.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.358 kcal (2) G-P(sol) polarization free energy of solvation -54.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds