Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39554 * 120.44747 * 217.36044 * 3 2 1 5 5 C 1.37311 * 120.91569 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.76981 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47085 * 359.97438 * 6 5 4 8 8 C 1.39924 * 122.46307 * 359.97438 * 5 4 3 9 9 S 1.76226 * 130.12940 * 180.02562 * 8 5 4 10 10 C 1.75477 * 91.54768 * 179.97438 * 9 8 5 11 11 C 1.32729 * 110.67282 * 0.02562 * 10 9 8 12 12 C 1.39753 * 120.67452 * 0.02562 * 8 5 4 13 13 C 1.46231 * 120.45430 * 37.34153 * 3 2 1 14 14 C 1.39897 * 120.71663 * 0.04466 * 13 3 2 15 15 H 1.07999 * 119.99890 * 39.61372 * 14 13 3 16 16 C 1.40362 * 120.00081 * 219.61787 * 14 13 3 17 17 N 1.30626 * 120.00132 * 19.85756 * 16 14 13 18 18 Si 1.86799 * 119.99824 * 199.86197 * 16 14 13 19 19 H 1.48498 * 109.47217 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47531 * 120.00008 * 18 16 14 21 21 H 1.48503 * 109.47142 * 239.99492 * 18 16 14 22 22 H 1.08003 * 119.54156 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.47311 * 119.98241 * 6 5 4 24 24 H 1.09001 * 109.47134 * 239.97696 * 6 5 4 25 25 H 0.96701 * 114.00736 * 179.97438 * 7 6 5 26 26 H 1.07996 * 124.66157 * 179.97438 * 10 9 8 27 27 H 1.08000 * 122.09540 * 180.02562 * 11 10 9 28 28 H 0.97000 * 119.99687 * 183.28375 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2747 0.9572 0.7301 5 6 4.6477 0.9664 0.7373 6 6 5.3618 2.0210 1.5429 7 8 4.4010 2.8621 2.1844 8 6 5.4088 0.0326 0.0255 9 16 7.1573 -0.1430 -0.1074 10 6 6.9851 -1.5319 -1.1659 11 6 5.7033 -1.8052 -1.3756 12 6 4.7880 -0.9627 -0.7341 13 6 3.3095 -1.0012 -0.7646 14 6 2.6354 -1.9753 -1.5088 15 1 1.7441 -1.7133 -2.0594 16 6 3.1174 -3.2932 -1.5396 17 7 3.9298 -3.7136 -0.6071 18 14 2.5971 -4.4460 -2.9143 19 1 1.6785 -3.7326 -3.8375 20 1 3.7976 -4.8988 -3.6618 21 1 1.9010 -5.6235 -2.3360 22 1 2.7342 1.7001 1.2979 23 1 5.9861 1.5416 2.2969 24 1 5.9868 2.6218 0.8822 25 1 4.7904 3.5653 2.7220 26 1 7.8089 -2.0873 -1.5893 27 1 5.3866 -2.6265 -2.0013 28 1 4.3004 -4.6088 -0.6541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396213540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = 10.988045 kcal Electronic energy + Delta-G solvation = -16242.319394 eV Core-core repulsion = 13542.257883 eV Total energy + Delta-G solvation = -2700.061512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.44697 -36.51824 -35.49780 -34.20162 -33.67382 -30.75118 -28.60520 -26.85171 -24.01780 -23.17847 -21.49890 -19.55186 -18.22719 -17.11319 -16.30004 -16.08000 -15.35944 -14.83089 -14.48216 -14.01030 -13.65006 -13.08614 -12.80732 -12.66860 -12.15428 -12.01801 -11.77957 -11.62637 -11.51824 -11.37920 -11.06215 -10.68993 -10.64082 -10.29935 -10.17638 -9.75553 -9.58653 -9.28589 -8.25268 -7.45352 -7.42822 -6.76191 -4.87916 1.70086 2.11500 2.46305 2.83514 2.84826 2.88973 2.91809 3.28059 3.59595 3.90930 4.07082 4.34144 4.69510 5.13420 5.31658 5.67116 5.77952 5.97401 5.99627 6.11650 6.38584 6.46957 6.59059 6.72488 6.92839 7.05576 7.36805 7.47715 7.48858 7.65484 7.89984 8.02307 8.18946 8.31708 8.81618 9.58495 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.009747 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.819732 B = 2872.097722 C = 4289.628115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.305 3.695 3 C -0.200 4.200 4 C 0.032 3.968 5 C -0.209 4.209 6 C 0.140 3.860 7 O -0.569 6.569 8 C -0.053 4.053 9 S 0.013 5.987 10 C -0.269 4.269 11 C -0.033 4.033 12 C -0.132 4.132 13 C 0.208 3.792 14 C -0.427 4.427 15 H 0.097 0.903 16 C 0.078 3.922 17 N -0.741 5.741 18 Si 0.908 3.092 19 H -0.253 1.253 20 H -0.263 1.263 21 H -0.267 1.267 22 H 0.119 0.881 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.371 0.629 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 2.587 -0.091 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.005 4.005 3 C -0.208 4.208 4 C 0.009 3.991 5 C -0.216 4.216 6 C 0.063 3.937 7 O -0.373 6.373 8 C -0.169 4.169 9 S 0.275 5.725 10 C -0.402 4.402 11 C -0.062 4.062 12 C -0.140 4.140 13 C 0.200 3.800 14 C -0.453 4.453 15 H 0.115 0.885 16 C -0.147 4.147 17 N -0.362 5.362 18 Si 0.730 3.270 19 H -0.176 1.176 20 H -0.188 1.188 21 H -0.192 1.192 22 H 0.137 0.863 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.217 0.783 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.942 2.644 0.260 7.433 hybrid contribution -0.279 -1.176 -0.786 1.441 sum 6.663 1.468 -0.525 6.843 Atomic orbital electron populations 1.81018 1.12578 1.11976 1.13038 1.25528 0.92423 0.91149 0.91354 1.16649 0.83560 1.07891 1.12742 1.20110 0.92377 0.93791 0.92822 1.17766 0.92591 1.01551 1.09663 1.20623 0.89383 0.90133 0.93605 1.86485 1.36213 1.46654 1.67933 1.22158 0.94353 0.99352 1.01059 1.83451 1.04406 1.31973 1.52715 1.24653 0.99926 1.04896 1.10729 1.19759 0.90902 0.97694 0.97806 1.18878 0.93266 0.97674 1.04198 1.19200 0.88111 0.87920 0.84763 1.19683 1.09874 0.92588 1.23187 0.88489 1.26106 0.93411 0.99298 0.95926 1.69756 1.20121 1.19327 1.26965 0.86218 0.80278 0.79624 0.80888 1.17567 1.18766 1.19203 0.86342 0.94183 0.94213 0.78322 0.83527 0.85348 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.33 18.54 41.84 0.78 -11.56 15 2 C 0.31 7.26 14.49 -22.48 -0.33 6.94 15 3 C -0.20 -4.68 5.94 -104.27 -0.62 -5.30 15 4 C 0.03 0.70 9.00 -39.43 -0.35 0.34 15 5 C -0.21 -4.30 5.90 -104.33 -0.62 -4.92 15 6 C 0.14 2.32 7.00 36.01 0.25 2.57 15 7 O -0.57 -8.70 11.98 -35.23 -0.42 -9.12 15 8 C -0.05 -1.13 6.30 -38.38 -0.24 -1.37 15 9 S 0.01 0.24 22.91 -107.50 -2.46 -2.22 15 10 C -0.27 -5.02 11.11 28.85 0.32 -4.69 15 11 C -0.03 -0.69 8.26 -40.82 -0.34 -1.02 15 12 C -0.13 -3.03 5.52 -104.71 -0.58 -3.61 15 13 C 0.21 5.00 5.66 -102.10 -0.58 4.43 15 14 C -0.43 -10.10 8.21 -38.16 -0.31 -10.41 15 15 H 0.10 2.30 7.76 -52.49 -0.41 1.89 15 16 C 0.08 1.71 3.87 -17.27 -0.07 1.64 15 17 N -0.74 -16.59 10.80 55.57 0.60 -15.99 15 18 Si 0.91 16.41 29.61 -169.99 -5.03 11.38 15 19 H -0.25 -4.64 7.11 56.52 0.40 -4.24 15 20 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 21 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 22 H 0.12 2.43 6.83 -52.48 -0.36 2.07 15 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.37 3.56 9.12 45.56 0.42 3.98 15 26 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 27 H 0.13 2.68 6.07 -52.49 -0.32 2.36 15 28 H 0.29 5.89 8.29 -40.82 -0.34 5.55 15 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -26.55 268.83 -7.02 -33.57 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -1.07 Total: 5.30 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -3.46 Total: -15.41 kcal Atomic # 7 Polarization: -28.92 SS G_CDS: 1.38 Total: -27.55 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.42 Total: -9.12 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.46 Total: -2.22 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.55 -7.02 -33.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.556 kcal (2) G-P(sol) polarization free energy of solvation -26.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds