Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39554 * 120.44747 * 217.36044 * 3 2 1 5 5 C 1.37311 * 120.91569 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.76981 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47085 * 359.97438 * 6 5 4 8 8 C 1.39924 * 122.46307 * 359.97438 * 5 4 3 9 9 S 1.76226 * 130.12940 * 180.02562 * 8 5 4 10 10 C 1.75477 * 91.54768 * 179.97438 * 9 8 5 11 11 C 1.32729 * 110.67282 * 0.02562 * 10 9 8 12 12 C 1.39753 * 120.67452 * 0.02562 * 8 5 4 13 13 C 1.46231 * 120.45430 * 37.34153 * 3 2 1 14 14 C 1.39897 * 120.71663 * 0.04466 * 13 3 2 15 15 H 1.07999 * 119.99890 * 39.61372 * 14 13 3 16 16 C 1.40362 * 120.00081 * 219.61787 * 14 13 3 17 17 N 1.30626 * 120.00132 * 19.85756 * 16 14 13 18 18 Si 1.86799 * 119.99824 * 199.86197 * 16 14 13 19 19 H 1.48498 * 109.47217 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47531 * 120.00008 * 18 16 14 21 21 H 1.48503 * 109.47142 * 239.99492 * 18 16 14 22 22 H 1.08003 * 119.54156 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.47311 * 119.98241 * 6 5 4 24 24 H 1.09001 * 109.47134 * 239.97696 * 6 5 4 25 25 H 0.96701 * 114.00736 * 179.97438 * 7 6 5 26 26 H 1.07996 * 124.66157 * 179.97438 * 10 9 8 27 27 H 1.08000 * 122.09540 * 180.02562 * 11 10 9 28 28 H 0.97000 * 119.99687 * 183.28375 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2747 0.9572 0.7301 5 6 4.6477 0.9664 0.7373 6 6 5.3618 2.0210 1.5429 7 8 4.4010 2.8621 2.1844 8 6 5.4088 0.0326 0.0255 9 16 7.1573 -0.1430 -0.1074 10 6 6.9851 -1.5319 -1.1659 11 6 5.7033 -1.8052 -1.3756 12 6 4.7880 -0.9627 -0.7341 13 6 3.3095 -1.0012 -0.7646 14 6 2.6354 -1.9753 -1.5088 15 1 1.7441 -1.7133 -2.0594 16 6 3.1174 -3.2932 -1.5396 17 7 3.9298 -3.7136 -0.6071 18 14 2.5971 -4.4460 -2.9143 19 1 1.6785 -3.7326 -3.8375 20 1 3.7976 -4.8988 -3.6618 21 1 1.9010 -5.6235 -2.3360 22 1 2.7342 1.7001 1.2979 23 1 5.9861 1.5416 2.2969 24 1 5.9868 2.6218 0.8822 25 1 4.7904 3.5653 2.7220 26 1 7.8089 -2.0873 -1.5893 27 1 5.3866 -2.6265 -2.0013 28 1 4.3004 -4.6088 -0.6541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -4.551276 kcal Electronic energy + Delta-G solvation = -16242.993230 eV Core-core repulsion = 13542.257883 eV Total energy + Delta-G solvation = -2700.735347 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04717 -37.82427 -37.31958 -35.81637 -35.28608 -32.37704 -30.25170 -28.38949 -25.54894 -24.81442 -23.14357 -21.10702 -19.85854 -18.59200 -17.78861 -17.70215 -16.86510 -16.40629 -15.76357 -15.58542 -15.12555 -14.66586 -14.53961 -14.32509 -13.86022 -13.65278 -13.41756 -13.26378 -13.07276 -13.00091 -12.56303 -12.26837 -12.10479 -11.84485 -11.63792 -11.32520 -11.06618 -10.80860 -9.84114 -9.08381 -9.05111 -8.32585 -6.60276 0.05518 0.43715 0.92624 1.32299 1.35967 1.40995 1.49651 1.65064 2.03840 2.10981 2.38600 2.58283 3.39749 3.55159 3.57703 4.23386 4.34295 4.52848 4.60642 4.72805 4.75760 4.88023 4.95998 5.11541 5.30963 5.43216 5.75924 5.80629 5.88683 6.02091 6.16599 6.49464 6.60504 6.95806 7.09132 7.99484 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.009747 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.819732 B = 2872.097722 C = 4289.628115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.309 3.691 3 C -0.228 4.228 4 C 0.021 3.979 5 C -0.207 4.207 6 C 0.145 3.855 7 O -0.584 6.584 8 C -0.084 4.084 9 S 0.082 5.918 10 C -0.254 4.254 11 C -0.062 4.062 12 C -0.148 4.148 13 C 0.184 3.816 14 C -0.457 4.457 15 H 0.082 0.918 16 C 0.053 3.947 17 N -0.765 5.765 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.244 1.244 21 H -0.265 1.265 22 H 0.124 0.876 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.397 0.603 26 H 0.181 0.819 27 H 0.124 0.876 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 2.568 -0.085 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C 0.001 3.999 3 C -0.236 4.236 4 C -0.003 4.003 5 C -0.214 4.214 6 C 0.067 3.933 7 O -0.392 6.392 8 C -0.201 4.201 9 S 0.345 5.655 10 C -0.387 4.387 11 C -0.091 4.091 12 C -0.156 4.156 13 C 0.176 3.824 14 C -0.483 4.483 15 H 0.100 0.900 16 C -0.171 4.171 17 N -0.387 5.387 18 Si 0.789 3.211 19 H -0.186 1.186 20 H -0.168 1.168 21 H -0.190 1.190 22 H 0.142 0.858 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.247 0.753 26 H 0.198 0.802 27 H 0.142 0.858 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.529 2.661 0.297 9.898 hybrid contribution -0.897 -1.091 -0.723 1.587 sum 8.632 1.570 -0.425 8.784 Atomic orbital electron populations 1.80979 1.12986 1.12911 1.14115 1.25778 0.92695 0.90600 0.90826 1.16880 0.83278 1.09296 1.14149 1.20213 0.93184 0.93810 0.93060 1.18275 0.92445 1.01874 1.08774 1.20555 0.89084 0.89714 0.93921 1.86424 1.36694 1.47580 1.68500 1.22541 0.97045 0.99330 1.01181 1.83157 1.00654 1.30522 1.51215 1.25178 0.99968 1.04530 1.09033 1.19759 0.91657 0.98396 0.99302 1.19152 0.93057 0.98610 1.04756 1.19512 0.89326 0.88355 0.85206 1.19755 1.10151 0.93950 1.24431 0.90046 1.26689 0.93166 0.99667 0.97557 1.69748 1.20702 1.20262 1.27941 0.85323 0.80274 0.77422 0.78075 1.18615 1.16754 1.18955 0.85803 0.92747 0.92353 0.75288 0.80186 0.85823 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.75 18.54 19.00 0.35 -26.40 15 2 C 0.31 15.37 14.49 88.33 1.28 16.65 15 3 C -0.23 -11.04 5.94 -19.64 -0.12 -11.16 15 4 C 0.02 0.90 9.00 22.37 0.20 1.10 15 5 C -0.21 -8.31 5.90 -19.67 -0.12 -8.43 15 6 C 0.14 4.40 7.00 71.24 0.50 4.90 15 7 O -0.58 -16.46 11.98 -148.98 -1.78 -18.24 15 8 C -0.08 -3.49 6.30 23.04 0.15 -3.34 15 9 S 0.08 2.70 22.91 -56.49 -1.29 1.40 15 10 C -0.25 -8.68 11.11 66.65 0.74 -7.94 15 11 C -0.06 -2.55 8.26 21.52 0.18 -2.37 15 12 C -0.15 -6.75 5.52 -19.92 -0.11 -6.86 15 13 C 0.18 9.13 5.66 -18.23 -0.10 9.03 15 14 C -0.46 -22.47 8.21 23.19 0.19 -22.27 15 15 H 0.08 4.10 7.76 -2.91 -0.02 4.08 15 16 C 0.05 2.34 3.87 85.39 0.33 2.67 15 17 N -0.77 -34.38 10.80 21.90 0.24 -34.14 15 18 Si 0.97 33.70 29.61 68.60 2.03 35.73 15 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 20 H -0.24 -7.68 7.11 99.48 0.71 -6.97 15 21 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 22 H 0.12 5.13 6.83 -2.91 -0.02 5.11 15 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.40 6.40 9.12 -74.06 -0.68 5.73 15 26 H 0.18 4.86 8.06 -2.91 -0.02 4.83 15 27 H 0.12 5.11 6.07 -2.91 -0.02 5.09 15 28 H 0.31 12.05 8.29 -92.71 -0.77 11.28 15 Total: -1.00 -57.76 268.83 3.21 -54.54 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.55 Total: 15.14 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.12 Total: -28.03 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.59 Total: -60.54 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.78 Total: -18.24 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 2.03 Total: 35.73 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.29 Total: 1.40 kcal Total: -57.76 3.21 -54.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.990 kcal (2) G-P(sol) polarization free energy of solvation -57.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds