Wall clock time and date at job start Mon Mar 30 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39179 * 119.64029 * 59.55678 * 3 2 1 5 5 C 1.39940 * 119.98361 * 180.28666 * 4 3 2 6 6 C 1.40678 * 120.29405 * 179.70783 * 5 4 3 7 7 H 1.08003 * 119.99924 * 150.02378 * 6 5 4 8 8 C 1.39976 * 119.99915 * 330.02373 * 6 5 4 9 9 N 1.30842 * 119.99932 * 161.73666 * 8 6 5 10 10 Si 1.86800 * 120.00175 * 341.73946 * 8 6 5 11 11 H 1.48498 * 109.47072 * 95.39613 * 10 8 6 12 12 H 1.48497 * 109.46882 * 215.39700 * 10 8 6 13 13 H 1.48502 * 109.46956 * 335.39812 * 10 8 6 14 14 C 1.47973 * 119.40933 * 359.68159 * 5 4 3 15 15 C 1.39844 * 129.01881 * 180.02562 * 14 5 4 16 16 C 1.32834 * 115.85129 * 179.97438 * 15 14 5 17 17 S 1.75503 * 110.66616 * 0.02562 * 16 15 14 18 18 C 1.39903 * 118.31341 * 0.02562 * 14 5 4 19 19 C 1.39276 * 120.23519 * 0.02562 * 18 14 5 20 20 C 1.50697 * 119.33431 * 180.02562 * 19 18 14 21 21 O 1.42899 * 109.47413 * 89.99621 * 20 19 18 22 22 H 1.07996 * 120.00829 * 359.97438 * 4 3 2 23 23 H 0.97002 * 120.00609 * 180.02562 * 9 8 6 24 24 H 1.07996 * 122.07613 * 0.02562 * 15 14 5 25 25 H 1.07999 * 124.66573 * 179.97438 * 16 15 14 26 26 H 1.09003 * 109.46976 * 329.99848 * 20 19 18 27 27 H 1.09000 * 109.47116 * 210.00259 * 20 19 18 28 28 H 0.96699 * 113.99712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2566 -0.6120 -1.0429 5 6 4.6560 -0.6208 -1.0471 6 6 5.3585 -1.2435 -2.0948 7 1 6.3320 -0.8767 -2.3850 8 6 4.7960 -2.3385 -2.7610 9 7 5.2508 -2.6940 -3.9352 10 14 3.3959 -3.2921 -1.9738 11 1 2.0991 -2.7781 -2.4831 12 1 3.5254 -4.7319 -2.3133 13 1 3.4502 -3.1242 -0.4993 14 6 5.3900 0.0311 0.0601 15 6 6.7701 0.1417 0.2566 16 6 7.1490 0.7892 1.3528 17 16 5.7518 1.3341 2.2645 18 6 4.6498 0.6378 1.0805 19 6 3.2576 0.6204 1.0425 20 6 2.4805 1.2807 2.1520 21 8 2.2391 2.6485 1.8161 22 1 2.7111 -1.0848 -1.8461 23 1 4.8607 -3.4526 -4.3971 24 1 7.4837 -0.2729 -0.4400 25 1 8.1756 0.9566 1.6435 26 1 3.0540 1.2296 3.0776 27 1 1.5290 0.7659 2.2854 28 1 1.7419 3.1363 2.4868 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214320.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:01 Heat of formation + Delta-G solvation = 11.910731 kcal Electronic energy + Delta-G solvation = -16240.879714 eV Core-core repulsion = 13540.858213 eV Total energy + Delta-G solvation = -2700.021501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.89595 -36.60164 -35.97960 -34.61516 -33.79159 -31.33905 -28.98690 -27.09642 -23.88350 -23.58905 -21.33552 -20.11123 -18.56567 -17.06890 -16.84647 -16.39344 -15.26468 -15.11169 -14.73517 -13.96827 -13.51133 -13.24532 -13.16792 -12.98021 -12.77577 -12.43924 -12.06108 -11.83977 -11.72624 -11.34126 -11.26051 -11.08006 -10.43693 -10.25961 -10.01762 -9.90260 -9.67347 -9.50772 -8.59850 -7.67790 -7.45963 -7.13287 -4.88030 1.16732 2.12066 2.30851 2.72952 2.76014 2.87844 2.95011 3.07605 3.22425 3.65310 3.72653 4.12463 4.57590 4.78816 5.11386 5.46700 5.54933 5.58251 5.77590 6.00793 6.14619 6.31114 6.50849 6.61006 6.73040 6.81087 7.15900 7.23066 7.32439 7.42466 7.79021 7.95668 8.00419 8.11177 8.23381 9.51306 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.010326 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.885385 B = 2710.964747 C = 4071.208622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.275 3.725 3 C 0.063 3.937 4 C -0.223 4.223 5 C 0.130 3.870 6 C -0.392 4.392 7 H 0.105 0.895 8 C 0.081 3.919 9 N -0.767 5.767 10 Si 0.906 3.094 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.234 1.234 14 C -0.155 4.155 15 C -0.066 4.066 16 C -0.262 4.262 17 S 0.036 5.964 18 C -0.050 4.050 19 C -0.170 4.170 20 C 0.133 3.867 21 O -0.564 6.564 22 H 0.116 0.884 23 H 0.297 0.703 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 2.021 7.366 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.039 4.039 3 C 0.057 3.943 4 C -0.247 4.247 5 C 0.124 3.876 6 C -0.417 4.417 7 H 0.123 0.877 8 C -0.144 4.144 9 N -0.387 5.387 10 Si 0.730 3.270 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.157 1.157 14 C -0.162 4.162 15 C -0.096 4.096 16 C -0.395 4.395 17 S 0.298 5.702 18 C -0.166 4.166 19 C -0.179 4.179 20 C 0.055 3.945 21 O -0.369 6.369 22 H 0.133 0.867 23 H 0.108 0.892 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.288 2.484 7.915 8.301 hybrid contribution -0.151 -1.090 -0.752 1.333 sum -0.439 1.394 7.163 7.310 Atomic orbital electron populations 1.81082 1.12325 1.10129 1.09227 1.26101 0.93139 0.92354 0.92330 1.15382 0.82620 1.00539 0.95761 1.20689 0.93870 1.10279 0.99853 1.18258 0.90150 0.89815 0.89409 1.19641 1.04826 1.09153 1.08104 0.87666 1.26398 0.97300 0.97399 0.93326 1.69652 1.36496 1.22467 1.10089 0.86329 0.79863 0.77608 0.83190 1.18795 1.20756 1.15699 1.19113 0.91920 1.08957 0.96240 1.19741 0.94997 0.98011 0.96814 1.24774 1.00798 1.12049 1.01894 1.83588 0.97076 1.61902 1.27592 1.21920 0.95649 1.01259 0.97766 1.17721 0.89888 1.10599 0.99712 1.20762 0.96809 0.81833 0.95051 1.86693 1.78366 1.23252 1.48572 0.86663 0.89229 0.84885 0.83065 0.93684 0.94254 0.78835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.45 18.54 41.84 0.78 -8.67 15 2 C 0.27 5.71 13.62 -22.47 -0.31 5.40 15 3 C 0.06 1.34 5.71 -107.14 -0.61 0.73 15 4 C -0.22 -4.94 6.82 -38.60 -0.26 -5.21 15 5 C 0.13 2.94 5.28 -104.35 -0.55 2.39 15 6 C -0.39 -9.08 9.29 -38.01 -0.35 -9.43 15 7 H 0.11 2.49 7.81 -52.48 -0.41 2.08 15 8 C 0.08 1.83 5.40 -17.32 -0.09 1.74 15 9 N -0.77 -17.59 13.93 55.55 0.77 -16.81 15 10 Si 0.91 18.40 24.53 -169.99 -4.17 14.23 15 11 H -0.26 -5.32 6.72 56.52 0.38 -4.94 15 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 13 H -0.23 -4.87 6.87 56.52 0.39 -4.48 15 14 C -0.15 -3.33 6.02 -104.68 -0.63 -3.96 15 15 C -0.07 -1.26 9.76 -40.84 -0.40 -1.66 15 16 C -0.26 -4.44 11.12 28.87 0.32 -4.12 15 17 S 0.04 0.63 22.53 -107.50 -2.42 -1.79 15 18 C -0.05 -1.04 6.28 -38.57 -0.24 -1.28 15 19 C -0.17 -3.48 5.58 -103.76 -0.58 -4.06 15 20 C 0.13 2.30 6.57 36.00 0.24 2.54 15 21 O -0.56 -9.55 13.64 -35.23 -0.48 -10.03 15 22 H 0.12 2.53 4.73 -52.49 -0.25 2.28 15 23 H 0.30 6.10 8.30 -40.82 -0.34 5.77 15 24 H 0.13 2.37 7.81 -52.49 -0.41 1.96 15 25 H 0.15 2.10 8.06 -52.49 -0.42 1.68 15 26 H 0.05 0.71 7.53 -51.93 -0.39 0.31 15 27 H 0.04 0.66 6.98 -51.93 -0.36 0.30 15 28 H 0.37 4.17 9.12 45.56 0.42 4.59 15 LS Contribution 265.64 15.07 4.00 4.00 Total: -1.00 -25.52 265.64 -5.99 -31.51 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -1.00 Total: 4.49 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.47 Total: -16.92 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 1.55 Total: -25.48 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.48 Total: -10.03 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.17 Total: 14.23 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.42 Total: -1.79 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -25.52 -5.99 -31.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214320.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.416 kcal (2) G-P(sol) polarization free energy of solvation -25.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds