Wall clock time and date at job start Mon Mar 30 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40688 * 120.46890 * 161.73753 * 3 2 1 5 5 S 1.76035 * 130.37900 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.51470 * 179.97438 * 5 4 3 7 7 C 1.50696 * 124.60500 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47092 * 269.97469 * 7 6 5 9 9 C 1.32467 * 110.78560 * 359.73115 * 6 5 4 10 10 C 1.40061 * 120.11474 * 179.97438 * 4 3 2 11 11 C 1.42031 * 119.51358 * 0.02562 * 10 4 3 12 12 C 1.35015 * 121.97842 * 0.02562 * 11 10 4 13 13 C 1.41287 * 120.57138 * 359.97002 * 12 11 10 14 14 C 1.40328 * 120.61479 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99849 * 154.92577 * 14 13 12 16 16 C 1.40258 * 120.00469 * 334.92806 * 14 13 12 17 17 N 1.30669 * 119.99714 * 342.67207 * 16 14 13 18 18 Si 1.86793 * 120.00343 * 162.66451 * 16 14 13 19 19 H 1.48499 * 109.46988 * 60.00290 * 18 16 14 20 20 H 1.48497 * 109.47415 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47087 * 300.00514 * 18 16 14 22 22 H 1.08997 * 109.47240 * 29.97696 * 7 6 5 23 23 H 1.09003 * 109.47170 * 149.97688 * 7 6 5 24 24 H 0.96703 * 114.00242 * 180.02562 * 8 7 6 25 25 H 1.08001 * 122.03275 * 180.28943 * 9 6 5 26 26 H 1.07995 * 119.01228 * 179.97438 * 11 10 4 27 27 H 1.07995 * 119.71713 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00105 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2809 1.1525 -0.3800 5 16 2.7026 2.7312 -0.9017 6 6 4.3443 3.3205 -1.0945 7 6 4.7066 4.7098 -1.5522 8 8 4.8228 4.7270 -2.9763 9 6 5.2216 2.3801 -0.7771 10 6 4.6815 1.1451 -0.3768 11 6 5.3740 -0.0325 0.0119 12 6 4.7228 -1.1560 0.3815 13 6 3.3106 -1.1968 0.3942 14 6 2.6328 -2.3638 0.7787 15 1 1.6300 -2.3003 1.1746 16 6 3.2576 -3.6128 0.6489 17 7 4.3041 -3.7427 -0.1227 18 14 2.5939 -5.0904 1.5791 19 1 1.1909 -5.3465 1.1652 20 1 3.4258 -6.2821 1.2739 21 1 2.6376 -4.8173 3.0381 22 1 3.9296 5.4086 -1.2425 23 1 5.6573 5.0027 -1.1065 24 1 5.0551 5.5917 -3.3416 25 1 6.2869 2.5505 -0.8264 26 1 6.4540 -0.0294 0.0110 27 1 5.2862 -2.0310 0.6699 28 1 4.7360 -4.6065 -0.2128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:19 Heat of formation + Delta-G solvation = 3.115684 kcal Electronic energy + Delta-G solvation = -15701.468922 eV Core-core repulsion = 13001.066039 eV Total energy + Delta-G solvation = -2700.402883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.42183 -36.87542 -35.48566 -34.97117 -33.14121 -30.14297 -29.75878 -27.09702 -24.23444 -22.97268 -21.56220 -19.51167 -18.24859 -17.28816 -17.25461 -15.83411 -15.57310 -14.85600 -14.51698 -13.84226 -13.42291 -13.32977 -13.05433 -12.67696 -12.23598 -11.96494 -11.89355 -11.77797 -11.52737 -11.29741 -11.14984 -10.89793 -10.58753 -10.20683 -10.11313 -9.86817 -9.69940 -9.46638 -8.58468 -7.63103 -7.46646 -6.87864 -4.92526 1.65640 2.12036 2.39101 2.70072 2.78614 2.81591 2.85414 3.17786 3.51510 3.90307 4.09663 4.31986 4.70466 5.21582 5.32779 5.35378 5.43393 5.60420 5.98025 6.08226 6.33605 6.45695 6.53627 6.70268 6.80757 6.96345 7.36356 7.39171 7.52494 7.60550 7.75800 7.95413 8.14060 8.30772 8.80509 9.44694 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.005878 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.997294 B = 4762.410688 C = 5441.461671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.297 3.703 3 C -0.185 4.185 4 C -0.008 4.008 5 S 0.039 5.961 6 C -0.253 4.253 7 C 0.162 3.838 8 O -0.568 6.568 9 C -0.044 4.044 10 C -0.208 4.208 11 C -0.045 4.045 12 C -0.143 4.143 13 C 0.167 3.833 14 C -0.397 4.397 15 H 0.094 0.906 16 C 0.071 3.929 17 N -0.744 5.744 18 Si 0.923 3.077 19 H -0.257 1.257 20 H -0.270 1.270 21 H -0.254 1.254 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.371 0.629 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 5.445 0.632 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.012 4.012 3 C -0.199 4.199 4 C -0.127 4.127 5 S 0.301 5.699 6 C -0.367 4.367 7 C 0.083 3.917 8 O -0.373 6.373 9 C -0.074 4.074 10 C -0.215 4.215 11 C -0.066 4.066 12 C -0.163 4.163 13 C 0.159 3.841 14 C -0.423 4.423 15 H 0.112 0.888 16 C -0.155 4.155 17 N -0.364 5.364 18 Si 0.745 3.255 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.178 1.178 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.218 0.782 25 H 0.141 0.859 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.942 5.366 0.356 6.130 hybrid contribution 1.795 -0.711 0.373 1.967 sum 4.737 4.654 0.729 6.681 Atomic orbital electron populations 1.81013 1.12433 1.10011 1.14896 1.25572 0.92492 0.91711 0.91447 1.15932 0.83073 0.95951 1.24991 1.22211 0.95977 0.94645 0.99847 1.83834 1.07344 1.06308 1.72373 1.22966 0.95825 1.00157 1.17784 1.20224 0.98816 0.91882 0.80783 1.86669 1.93517 1.36092 1.21044 1.19689 0.99018 0.91539 0.97150 1.17595 0.91104 0.95656 1.17099 1.20337 0.97850 0.91518 0.96925 1.20855 0.93842 0.97456 1.04099 1.18352 0.91485 0.89271 0.84992 1.19915 1.01752 0.90286 1.30363 0.88810 1.26289 0.93895 1.01827 0.93459 1.69706 1.14943 1.28032 1.23732 0.86060 0.80450 0.78088 0.80908 1.18103 1.19427 1.17818 0.93482 0.92671 0.78243 0.85906 0.88050 0.85077 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.60 18.54 41.84 0.78 -11.82 15 2 C 0.30 7.32 14.04 -22.47 -0.32 7.00 15 3 C -0.19 -4.48 5.97 -103.80 -0.62 -5.10 15 4 C -0.01 -0.19 6.34 -37.97 -0.24 -0.43 15 5 S 0.04 0.79 22.97 -107.50 -2.47 -1.68 15 6 C -0.25 -4.66 6.05 -36.23 -0.22 -4.88 15 7 C 0.16 2.30 7.50 36.00 0.27 2.57 15 8 O -0.57 -8.17 13.64 -35.23 -0.48 -8.65 15 9 C -0.04 -0.82 9.96 -40.60 -0.40 -1.23 15 10 C -0.21 -4.44 5.88 -106.86 -0.63 -5.07 15 11 C -0.05 -0.93 9.91 -39.27 -0.39 -1.32 15 12 C -0.14 -3.15 8.58 -39.57 -0.34 -3.49 15 13 C 0.17 3.99 5.72 -104.71 -0.60 3.39 15 14 C -0.40 -9.25 8.55 -38.04 -0.33 -9.57 15 15 H 0.09 2.20 7.38 -52.49 -0.39 1.81 15 16 C 0.07 1.51 5.15 -17.29 -0.09 1.42 15 17 N -0.74 -15.84 10.97 55.56 0.61 -15.23 15 18 Si 0.92 15.95 29.60 -169.99 -5.03 10.92 15 19 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 20 H -0.27 -4.44 7.11 56.52 0.40 -4.03 15 21 H -0.25 -4.35 7.11 56.52 0.40 -3.95 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.37 3.12 9.12 45.56 0.42 3.53 15 25 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 26 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.13 2.82 6.19 -52.49 -0.32 2.49 15 28 H 0.30 5.61 8.29 -40.82 -0.34 5.27 15 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -27.30 274.07 -7.49 -34.79 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -1.12 Total: 4.24 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.90 Total: -16.70 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 1.38 Total: -27.06 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.48 Total: -8.65 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.03 Total: 10.92 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.47 Total: -1.68 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.30 -7.49 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.907 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds