Wall clock time and date at job start Mon Mar 30 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40688 * 120.46890 * 161.73753 * 3 2 1 5 5 S 1.76035 * 130.37900 * 359.97438 * 4 3 2 6 6 C 1.75482 * 91.51470 * 179.97438 * 5 4 3 7 7 C 1.50696 * 124.60500 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47092 * 269.97469 * 7 6 5 9 9 C 1.32467 * 110.78560 * 359.73115 * 6 5 4 10 10 C 1.40061 * 120.11474 * 179.97438 * 4 3 2 11 11 C 1.42031 * 119.51358 * 0.02562 * 10 4 3 12 12 C 1.35015 * 121.97842 * 0.02562 * 11 10 4 13 13 C 1.41287 * 120.57138 * 359.97002 * 12 11 10 14 14 C 1.40328 * 120.61479 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99849 * 154.92577 * 14 13 12 16 16 C 1.40258 * 120.00469 * 334.92806 * 14 13 12 17 17 N 1.30669 * 119.99714 * 342.67207 * 16 14 13 18 18 Si 1.86793 * 120.00343 * 162.66451 * 16 14 13 19 19 H 1.48499 * 109.46988 * 60.00290 * 18 16 14 20 20 H 1.48497 * 109.47415 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47087 * 300.00514 * 18 16 14 22 22 H 1.08997 * 109.47240 * 29.97696 * 7 6 5 23 23 H 1.09003 * 109.47170 * 149.97688 * 7 6 5 24 24 H 0.96703 * 114.00242 * 180.02562 * 8 7 6 25 25 H 1.08001 * 122.03275 * 180.28943 * 9 6 5 26 26 H 1.07995 * 119.01228 * 179.97438 * 11 10 4 27 27 H 1.07995 * 119.71713 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00105 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2809 1.1525 -0.3800 5 16 2.7026 2.7312 -0.9017 6 6 4.3443 3.3205 -1.0945 7 6 4.7066 4.7098 -1.5522 8 8 4.8228 4.7270 -2.9763 9 6 5.2216 2.3801 -0.7771 10 6 4.6815 1.1451 -0.3768 11 6 5.3740 -0.0325 0.0119 12 6 4.7228 -1.1560 0.3815 13 6 3.3106 -1.1968 0.3942 14 6 2.6328 -2.3638 0.7787 15 1 1.6300 -2.3003 1.1746 16 6 3.2576 -3.6128 0.6489 17 7 4.3041 -3.7427 -0.1227 18 14 2.5939 -5.0904 1.5791 19 1 1.1909 -5.3465 1.1652 20 1 3.4258 -6.2821 1.2739 21 1 2.6376 -4.8173 3.0381 22 1 3.9296 5.4086 -1.2425 23 1 5.6573 5.0027 -1.1065 24 1 5.0551 5.5917 -3.3416 25 1 6.2869 2.5505 -0.8264 26 1 6.4540 -0.0294 0.0110 27 1 5.2862 -2.0310 0.6699 28 1 4.7360 -4.6065 -0.2128 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:18 Heat of formation + Delta-G solvation = -13.233789 kcal Electronic energy + Delta-G solvation = -15702.177888 eV Core-core repulsion = 13001.066039 eV Total energy + Delta-G solvation = -2701.111849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04250 -38.12182 -37.15763 -36.65947 -34.70432 -31.83731 -31.30833 -28.58370 -25.70671 -24.65211 -23.18337 -21.02350 -19.90050 -18.92766 -18.31612 -17.46082 -17.11001 -16.30062 -15.98929 -15.34922 -14.92834 -14.80702 -14.69373 -14.19759 -13.82403 -13.69490 -13.56490 -13.53834 -13.02013 -12.90286 -12.54444 -12.39507 -12.04922 -11.81719 -11.69481 -11.35850 -11.05608 -10.88048 -10.24686 -9.28930 -9.06682 -8.52201 -6.66408 0.09625 0.36920 0.79168 1.24797 1.29605 1.36269 1.48087 1.67396 1.98897 2.09224 2.41095 2.54041 3.45798 3.56753 3.66662 4.16258 4.33381 4.40582 4.59868 4.63741 4.76831 4.81285 4.93122 5.05115 5.21203 5.37395 5.69406 5.77589 5.86731 5.93987 6.25822 6.43599 6.61209 6.91129 7.00596 7.89044 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.005878 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.997294 B = 4762.410688 C = 5441.461671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.299 3.701 3 C -0.220 4.220 4 C -0.036 4.036 5 S 0.019 5.981 6 C -0.238 4.238 7 C 0.161 3.839 8 O -0.591 6.591 9 C -0.055 4.055 10 C -0.211 4.211 11 C -0.039 4.039 12 C -0.155 4.155 13 C 0.147 3.853 14 C -0.426 4.426 15 H 0.078 0.922 16 C 0.044 3.956 17 N -0.761 5.761 18 Si 0.986 3.014 19 H -0.268 1.268 20 H -0.249 1.249 21 H -0.252 1.252 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.399 0.601 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 6.186 0.459 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C -0.009 4.009 3 C -0.234 4.234 4 C -0.154 4.154 5 S 0.282 5.718 6 C -0.352 4.352 7 C 0.083 3.917 8 O -0.400 6.400 9 C -0.085 4.085 10 C -0.218 4.218 11 C -0.060 4.060 12 C -0.174 4.174 13 C 0.139 3.861 14 C -0.451 4.451 15 H 0.096 0.904 16 C -0.181 4.181 17 N -0.382 5.382 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.172 1.172 21 H -0.175 1.175 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.249 0.751 25 H 0.177 0.823 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.170 6.137 0.164 8.026 hybrid contribution 1.205 -0.760 0.332 1.463 sum 6.375 5.376 0.497 8.354 Atomic orbital electron populations 1.80965 1.12849 1.10795 1.16340 1.25872 0.92842 0.91154 0.90986 1.16161 0.82771 0.97237 1.27219 1.22465 0.97022 0.95190 1.00719 1.83878 1.10055 1.05693 1.72175 1.23620 0.93836 1.02038 1.15745 1.20358 1.01043 0.89195 0.81146 1.86574 1.93813 1.38713 1.20916 1.19966 1.00929 0.90360 0.97237 1.18054 0.90610 0.96985 1.16133 1.20682 0.99622 0.90542 0.95160 1.20913 0.93094 0.98336 1.05090 1.18661 0.92609 0.89428 0.85372 1.20031 1.01628 0.91644 1.31845 0.90356 1.26934 0.94035 1.03285 0.93803 1.69673 1.15307 1.29508 1.23671 0.85158 0.79332 0.75468 0.79586 1.19259 1.17204 1.17530 0.92085 0.89132 0.75088 0.82309 0.84464 0.84819 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.59 18.54 19.00 0.35 -27.24 15 2 C 0.30 15.44 14.04 88.33 1.24 16.68 15 3 C -0.22 -11.02 5.97 -19.34 -0.12 -11.14 15 4 C -0.04 -1.65 6.34 23.31 0.15 -1.50 15 5 S 0.02 0.79 22.97 -56.49 -1.30 -0.51 15 6 C -0.24 -8.11 6.05 24.56 0.15 -7.96 15 7 C 0.16 3.93 7.50 71.23 0.53 4.46 15 8 O -0.59 -14.75 13.64 -148.98 -2.03 -16.79 15 9 C -0.06 -1.92 9.96 21.72 0.22 -1.71 15 10 C -0.21 -8.72 5.88 -21.32 -0.13 -8.85 15 11 C -0.04 -1.56 9.91 22.47 0.22 -1.34 15 12 C -0.15 -6.83 8.58 22.28 0.19 -6.64 15 13 C 0.15 7.24 5.72 -19.92 -0.11 7.13 15 14 C -0.43 -20.56 8.55 23.27 0.20 -20.36 15 15 H 0.08 3.90 7.38 -2.91 -0.02 3.88 15 16 C 0.04 1.87 5.15 85.36 0.44 2.30 15 17 N -0.76 -32.17 10.97 21.88 0.24 -31.93 15 18 Si 0.99 32.40 29.60 68.60 2.03 34.43 15 19 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 20 H -0.25 -7.29 7.11 99.48 0.71 -6.58 15 21 H -0.25 -8.10 7.11 99.48 0.71 -7.39 15 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.40 5.08 9.12 -74.06 -0.68 4.40 15 25 H 0.16 4.33 8.06 -2.91 -0.02 4.31 15 26 H 0.14 4.34 8.06 -2.91 -0.02 4.31 15 27 H 0.13 5.72 6.19 -2.91 -0.02 5.71 15 28 H 0.31 11.37 8.29 -92.71 -0.77 10.60 15 Total: -1.00 -60.12 274.07 2.83 -57.29 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.55 Total: 13.65 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 2.98 Total: -28.91 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.59 Total: -59.17 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -2.03 Total: -16.79 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: 2.03 Total: 34.43 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.30 Total: -0.51 kcal Total: -60.12 2.83 -57.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.060 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds