Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39823 * 120.55493 * 280.03965 * 3 2 1 5 5 C 1.36943 * 120.58593 * 179.72360 * 4 3 2 6 6 C 1.41640 * 121.89148 * 0.25990 * 5 4 3 7 7 C 1.45430 * 128.60913 * 180.02562 * 6 5 4 8 8 C 1.31950 * 114.96277 * 179.97438 * 7 6 5 9 9 C 1.50699 * 124.34819 * 179.97438 * 8 7 6 10 10 O 1.42897 * 109.47443 * 89.99967 * 9 8 7 11 11 S 1.75295 * 111.30448 * 359.97438 * 8 7 6 12 12 C 1.39421 * 119.65262 * 359.97438 * 6 5 4 13 13 C 1.42235 * 119.88005 * 0.02562 * 12 6 5 14 14 C 1.40266 * 120.44936 * 180.02562 * 13 12 6 15 15 H 1.08000 * 119.99948 * 218.67262 * 14 13 12 16 16 C 1.40301 * 119.99930 * 38.67799 * 14 13 12 17 17 N 1.30647 * 120.00436 * 20.94863 * 16 14 13 18 18 Si 1.86811 * 119.99960 * 200.95126 * 16 14 13 19 19 H 1.48506 * 109.46922 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47167 * 119.99423 * 18 16 14 21 21 H 1.48498 * 109.47119 * 239.99842 * 18 16 14 22 22 H 1.07998 * 119.70608 * 0.02562 * 4 3 2 23 23 H 1.08000 * 119.04891 * 180.23083 * 5 4 3 24 24 H 1.07997 * 122.51708 * 359.97438 * 7 6 5 25 25 H 1.09002 * 109.47435 * 209.99836 * 9 8 7 26 26 H 1.09007 * 109.47343 * 329.99968 * 9 8 7 27 27 H 0.96701 * 114.00397 * 180.02562 * 10 9 8 28 28 H 0.96997 * 120.00174 * 181.89613 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2788 -0.2089 1.1856 5 6 4.6482 -0.2141 1.1854 6 6 5.3971 -0.0047 0.0015 7 6 6.8415 0.0194 -0.1663 8 6 7.2552 0.2385 -1.4000 9 6 8.7032 0.3068 -1.8117 10 8 9.1561 -0.9978 -2.1790 11 16 5.9041 0.4399 -2.4985 12 6 4.7334 0.2134 -1.2050 13 6 3.3115 0.2250 -1.2396 14 6 2.6315 0.4428 -2.4469 15 1 1.7332 1.0422 -2.4602 16 6 3.1182 -0.1182 -3.6372 17 7 3.9257 -1.1444 -3.5935 18 14 2.6118 0.6022 -5.2847 19 1 1.6971 1.7508 -5.0626 20 1 3.8193 1.0645 -6.0150 21 1 1.9159 -0.4363 -6.0862 22 1 2.7431 -0.3731 2.1089 23 1 5.1722 -0.3821 2.1147 24 1 7.5241 -0.1308 0.6569 25 1 8.8078 0.9804 -2.6622 26 1 9.3007 0.6776 -0.9788 27 1 10.0822 -1.0294 -2.4554 28 1 4.2839 -1.5150 -4.4152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = 6.574578 kcal Electronic energy + Delta-G solvation = -16048.096866 eV Core-core repulsion = 13347.843972 eV Total energy + Delta-G solvation = -2700.252894 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.17515 -36.90620 -35.44326 -34.52950 -33.36724 -30.18845 -29.52841 -26.04398 -25.43398 -22.45070 -21.29935 -19.58297 -18.06479 -17.32014 -17.26993 -15.76753 -15.33585 -14.79543 -14.45669 -13.82810 -13.44086 -13.00526 -12.89152 -12.79973 -12.30768 -12.03102 -11.87839 -11.60897 -11.37855 -11.33164 -11.11041 -10.71370 -10.66014 -10.14381 -9.93881 -9.88190 -9.65998 -9.14840 -8.42793 -7.42745 -7.31707 -6.43827 -4.84373 1.46561 2.51087 2.57438 2.76214 2.92819 2.98945 3.08277 3.23507 3.70204 3.94568 4.12003 4.37489 4.64487 5.20191 5.22939 5.37324 5.39656 5.51891 5.92487 5.97131 6.24358 6.46618 6.60063 6.73577 6.89950 6.99096 7.24084 7.36588 7.60735 7.72008 7.76152 8.01989 8.25479 8.39376 8.81394 9.70733 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.010335 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.041452 B = 2708.562974 C = 4203.373156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.305 3.695 3 C -0.178 4.178 4 C -0.024 4.024 5 C -0.209 4.209 6 C -0.031 4.031 7 C -0.112 4.112 8 C -0.207 4.207 9 C 0.153 3.847 10 O -0.563 6.563 11 S 0.138 5.862 12 C -0.166 4.166 13 C 0.194 3.806 14 C -0.445 4.445 15 H 0.094 0.906 16 C 0.071 3.929 17 N -0.739 5.739 18 Si 0.903 3.097 19 H -0.254 1.254 20 H -0.262 1.262 21 H -0.268 1.268 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.125 0.875 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.374 0.626 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.692 2.668 -0.338 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.005 4.005 3 C -0.188 4.188 4 C -0.046 4.046 5 C -0.231 4.231 6 C -0.039 4.039 7 C -0.145 4.145 8 C -0.324 4.324 9 C 0.074 3.926 10 O -0.368 6.368 11 S 0.406 5.594 12 C -0.283 4.283 13 C 0.186 3.814 14 C -0.473 4.473 15 H 0.112 0.888 16 C -0.154 4.154 17 N -0.361 5.361 18 Si 0.725 3.275 19 H -0.177 1.177 20 H -0.186 1.186 21 H -0.193 1.193 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.142 0.858 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.387 2.604 -1.939 8.993 hybrid contribution 1.011 -0.046 0.652 1.204 sum 9.398 2.558 -1.287 9.824 Atomic orbital electron populations 1.81018 1.12612 1.14914 1.10081 1.25563 0.92465 0.91204 0.91276 1.16669 0.83365 1.23580 0.95139 1.20235 0.93382 0.95861 0.95166 1.19881 0.92671 1.15079 0.95468 1.19049 0.91107 1.00060 0.93731 1.20779 0.94108 1.03272 0.96360 1.23919 0.98842 1.10740 0.98884 1.20364 0.89686 0.84457 0.98112 1.86662 1.31488 1.29633 1.89061 1.83755 0.91988 1.73773 1.09843 1.22530 0.96786 1.14392 0.94586 1.17619 0.87684 0.85132 0.90964 1.19613 1.10157 1.26522 0.90983 0.88822 1.26043 0.93831 0.93525 1.02016 1.69698 1.20223 1.13675 1.32498 0.86263 0.80255 0.80661 0.80294 1.17707 1.18643 1.19282 0.87699 0.87971 0.85756 0.93065 0.92600 0.77998 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.32 18.54 41.84 0.78 -11.55 15 2 C 0.30 7.23 14.48 -22.48 -0.33 6.90 15 3 C -0.18 -4.15 5.95 -104.15 -0.62 -4.77 15 4 C -0.02 -0.50 9.70 -39.46 -0.38 -0.88 15 5 C -0.21 -4.21 10.01 -38.75 -0.39 -4.60 15 6 C -0.03 -0.66 6.03 -105.30 -0.63 -1.30 15 7 C -0.11 -2.13 10.21 -38.63 -0.39 -2.53 15 8 C -0.21 -3.86 6.01 -36.22 -0.22 -4.08 15 9 C 0.15 2.16 7.48 36.01 0.27 2.43 15 10 O -0.56 -8.11 13.64 -35.23 -0.48 -8.59 15 11 S 0.14 2.92 19.82 -107.50 -2.13 0.79 15 12 C -0.17 -3.90 5.75 -37.61 -0.22 -4.12 15 13 C 0.19 4.79 5.53 -104.37 -0.58 4.22 15 14 C -0.45 -11.00 8.23 -38.04 -0.31 -11.32 15 15 H 0.09 2.33 7.74 -52.49 -0.41 1.92 15 16 C 0.07 1.64 4.27 -17.28 -0.07 1.56 15 17 N -0.74 -17.51 10.67 55.57 0.59 -16.92 15 18 Si 0.90 17.54 29.61 -169.99 -5.03 12.51 15 19 H -0.25 -4.96 7.11 56.52 0.40 -4.56 15 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 22 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15 23 H 0.10 1.76 8.06 -52.49 -0.42 1.33 15 24 H 0.12 2.02 8.06 -52.49 -0.42 1.59 15 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 27 H 0.37 3.10 9.12 45.56 0.42 3.51 15 28 H 0.30 6.37 8.29 -40.82 -0.34 6.03 15 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -28.36 272.84 -7.28 -35.64 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.24 Total: 2.48 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.87 Total: -18.47 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 1.37 Total: -28.47 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.48 Total: -8.59 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.13 Total: 0.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.36 -7.28 -35.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.210 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds