Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39823 * 120.55493 * 280.03965 * 3 2 1 5 5 C 1.36943 * 120.58593 * 179.72360 * 4 3 2 6 6 C 1.41640 * 121.89148 * 0.25990 * 5 4 3 7 7 C 1.45430 * 128.60913 * 180.02562 * 6 5 4 8 8 C 1.31950 * 114.96277 * 179.97438 * 7 6 5 9 9 C 1.50699 * 124.34819 * 179.97438 * 8 7 6 10 10 O 1.42897 * 109.47443 * 89.99967 * 9 8 7 11 11 S 1.75295 * 111.30448 * 359.97438 * 8 7 6 12 12 C 1.39421 * 119.65262 * 359.97438 * 6 5 4 13 13 C 1.42235 * 119.88005 * 0.02562 * 12 6 5 14 14 C 1.40266 * 120.44936 * 180.02562 * 13 12 6 15 15 H 1.08000 * 119.99948 * 218.67262 * 14 13 12 16 16 C 1.40301 * 119.99930 * 38.67799 * 14 13 12 17 17 N 1.30647 * 120.00436 * 20.94863 * 16 14 13 18 18 Si 1.86811 * 119.99960 * 200.95126 * 16 14 13 19 19 H 1.48506 * 109.46922 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47167 * 119.99423 * 18 16 14 21 21 H 1.48498 * 109.47119 * 239.99842 * 18 16 14 22 22 H 1.07998 * 119.70608 * 0.02562 * 4 3 2 23 23 H 1.08000 * 119.04891 * 180.23083 * 5 4 3 24 24 H 1.07997 * 122.51708 * 359.97438 * 7 6 5 25 25 H 1.09002 * 109.47435 * 209.99836 * 9 8 7 26 26 H 1.09007 * 109.47343 * 329.99968 * 9 8 7 27 27 H 0.96701 * 114.00397 * 180.02562 * 10 9 8 28 28 H 0.96997 * 120.00174 * 181.89613 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2788 -0.2089 1.1856 5 6 4.6482 -0.2141 1.1854 6 6 5.3971 -0.0047 0.0015 7 6 6.8415 0.0194 -0.1663 8 6 7.2552 0.2385 -1.4000 9 6 8.7032 0.3068 -1.8117 10 8 9.1561 -0.9978 -2.1790 11 16 5.9041 0.4399 -2.4985 12 6 4.7334 0.2134 -1.2050 13 6 3.3115 0.2250 -1.2396 14 6 2.6315 0.4428 -2.4469 15 1 1.7332 1.0422 -2.4602 16 6 3.1182 -0.1182 -3.6372 17 7 3.9257 -1.1444 -3.5935 18 14 2.6118 0.6022 -5.2847 19 1 1.6971 1.7508 -5.0626 20 1 3.8193 1.0645 -6.0150 21 1 1.9159 -0.4363 -6.0862 22 1 2.7431 -0.3731 2.1089 23 1 5.1722 -0.3821 2.1147 24 1 7.5241 -0.1308 0.6569 25 1 8.8078 0.9804 -2.6622 26 1 9.3007 0.6776 -0.9788 27 1 10.0822 -1.0294 -2.4554 28 1 4.2839 -1.5150 -4.4152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = -10.850990 kcal Electronic energy + Delta-G solvation = -16048.852495 eV Core-core repulsion = 13347.843972 eV Total energy + Delta-G solvation = -2701.008523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78980 -38.12571 -37.15524 -36.20709 -34.96235 -31.90052 -31.01556 -27.69178 -26.88876 -24.03563 -22.97030 -21.06551 -19.75027 -18.97259 -18.34705 -17.36766 -16.92164 -16.26508 -16.01154 -15.16864 -14.90669 -14.65727 -14.60809 -14.38025 -13.87915 -13.64953 -13.50572 -13.37993 -13.11792 -12.89047 -12.51915 -12.30132 -12.22716 -11.76043 -11.53490 -11.27936 -10.99145 -10.72888 -10.09146 -9.09487 -9.01659 -8.08971 -6.64516 -0.16516 0.86493 1.03347 1.21887 1.32251 1.45386 1.48949 1.64179 2.07418 2.10542 2.39716 2.60214 3.43124 3.57210 3.61699 4.06802 4.29493 4.42295 4.50194 4.58552 4.68926 4.86281 4.98341 5.14432 5.30286 5.36881 5.58836 5.71101 5.94674 6.08141 6.25915 6.51251 6.63386 6.95241 6.99085 8.02322 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.010335 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.041452 B = 2708.562974 C = 4203.373156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.310 3.690 3 C -0.202 4.202 4 C -0.026 4.026 5 C -0.200 4.200 6 C -0.043 4.043 7 C -0.121 4.121 8 C -0.198 4.198 9 C 0.153 3.847 10 O -0.587 6.587 11 S 0.108 5.892 12 C -0.198 4.198 13 C 0.171 3.829 14 C -0.479 4.479 15 H 0.076 0.924 16 C 0.045 3.955 17 N -0.765 5.765 18 Si 0.956 3.044 19 H -0.261 1.261 20 H -0.246 1.246 21 H -0.262 1.262 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.160 0.840 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.400 0.600 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.116 2.686 0.245 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.001 3.999 3 C -0.211 4.211 4 C -0.048 4.048 5 C -0.221 4.221 6 C -0.052 4.052 7 C -0.153 4.153 8 C -0.314 4.314 9 C 0.075 3.925 10 O -0.397 6.397 11 S 0.376 5.624 12 C -0.315 4.315 13 C 0.163 3.837 14 C -0.506 4.506 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.387 5.387 18 Si 0.776 3.224 19 H -0.185 1.185 20 H -0.170 1.170 21 H -0.187 1.187 22 H 0.153 0.847 23 H 0.157 0.843 24 H 0.177 0.823 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.251 0.749 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.838 2.617 -1.346 11.231 hybrid contribution 0.384 -0.076 0.579 0.699 sum 11.223 2.540 -0.767 11.532 Atomic orbital electron populations 1.80991 1.13046 1.15944 1.10762 1.25782 0.92697 0.90709 0.90717 1.16982 0.83149 1.24807 0.96187 1.20571 0.93900 0.95039 0.95294 1.20345 0.92581 1.12729 0.96449 1.19605 0.92812 0.99231 0.93600 1.21058 0.93163 1.03388 0.97688 1.24445 1.00274 1.08809 0.97902 1.20488 0.87124 0.84816 1.00117 1.86573 1.34066 1.29667 1.89372 1.83672 0.93325 1.74357 1.11038 1.22747 0.96748 1.15762 0.96205 1.17939 0.88820 0.85495 0.91414 1.19645 1.10443 1.28110 0.92434 0.90569 1.26589 0.93615 0.93371 1.04204 1.69710 1.21107 1.14383 1.33549 0.85490 0.80297 0.79745 0.76853 1.18473 1.16977 1.18686 0.84735 0.84267 0.82290 0.91584 0.89061 0.74876 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.16 18.54 19.00 0.35 -25.81 15 2 C 0.31 15.03 14.48 88.33 1.28 16.31 15 3 C -0.20 -9.54 5.95 -19.56 -0.12 -9.66 15 4 C -0.03 -1.04 9.70 22.35 0.22 -0.82 15 5 C -0.20 -7.55 10.01 22.81 0.23 -7.32 15 6 C -0.04 -1.79 6.03 -20.30 -0.12 -1.91 15 7 C -0.12 -4.26 10.21 23.25 0.24 -4.02 15 8 C -0.20 -6.87 6.01 24.81 0.15 -6.72 15 9 C 0.15 3.76 7.48 71.24 0.53 4.29 15 10 O -0.59 -14.86 13.64 -148.98 -2.03 -16.89 15 11 S 0.11 4.55 19.82 -56.49 -1.12 3.43 15 12 C -0.20 -9.36 5.75 23.55 0.14 -9.22 15 13 C 0.17 8.69 5.53 -19.70 -0.11 8.58 15 14 C -0.48 -24.64 8.23 23.27 0.19 -24.45 15 15 H 0.08 4.02 7.74 -2.91 -0.02 4.00 15 16 C 0.04 2.12 4.27 85.37 0.36 2.48 15 17 N -0.76 -36.92 10.67 21.89 0.23 -36.69 15 18 Si 0.96 36.47 29.61 68.60 2.03 38.51 15 19 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 20 H -0.25 -8.68 7.11 99.48 0.71 -7.97 15 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 22 H 0.13 4.45 8.06 -2.91 -0.02 4.42 15 23 H 0.14 4.18 8.06 -2.91 -0.02 4.16 15 24 H 0.16 4.42 8.06 -2.91 -0.02 4.39 15 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 26 H 0.09 1.64 8.14 -2.38 -0.02 1.62 15 27 H 0.40 5.13 9.12 -74.06 -0.68 4.45 15 28 H 0.30 13.20 8.29 -92.71 -0.77 12.43 15 Total: -1.00 -62.38 272.84 3.00 -59.39 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.54 Total: 10.52 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 2.99 Total: -32.46 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.59 Total: -62.50 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -2.03 Total: -16.89 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.12 Total: 3.43 kcal Total: -62.38 3.00 -59.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.536 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds