Wall clock time and date at job start Mon Mar 30 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35796 * 116.99975 * 2 1 4 4 C 1.35649 * 119.78931 * 359.97438 * 3 2 1 5 5 C 1.41798 * 121.93638 * 180.02562 * 4 3 2 6 6 C 1.40727 * 128.17878 * 180.02562 * 5 4 3 7 7 C 1.32354 * 115.94121 * 179.97438 * 6 5 4 8 8 S 1.75461 * 110.82794 * 0.02562 * 7 6 5 9 9 C 1.40157 * 119.59788 * 359.97438 * 5 4 3 10 10 C 1.40600 * 120.21525 * 359.76987 * 9 5 4 11 11 C 1.43201 * 120.43289 * 180.28721 * 10 9 5 12 12 N 5.93305 * 151.86281 * 0.36548 * 2 1 3 13 13 C 1.41761 * 119.78765 * 179.97438 * 3 2 1 14 14 C 1.40142 * 120.65048 * 0.03643 * 13 3 2 15 15 H 1.08006 * 120.00216 * 218.74658 * 14 13 3 16 16 C 1.40301 * 120.00167 * 38.74496 * 14 13 3 17 17 N 1.30665 * 119.99632 * 20.19244 * 16 14 13 18 18 Si 1.86796 * 120.00255 * 200.19539 * 16 14 13 19 19 H 1.48507 * 109.47130 * 59.99605 * 18 16 14 20 20 H 1.48500 * 109.47323 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47152 * 300.00249 * 18 16 14 22 22 H 1.08991 * 109.47517 * 300.00065 * 1 2 3 23 23 H 1.09001 * 109.46795 * 60.00735 * 1 2 3 24 24 H 1.09007 * 109.46707 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.02853 * 359.97438 * 4 3 2 26 26 H 1.08006 * 122.02741 * 359.95833 * 6 5 4 27 27 H 1.07997 * 124.58515 * 180.02562 * 7 6 5 28 28 H 0.97007 * 119.99590 * 183.79682 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3025 2.3449 -0.0005 5 6 1.8985 3.6315 -0.0011 6 6 1.2603 4.8858 -0.0012 7 6 2.0585 5.9415 -0.0012 8 16 3.7429 5.4502 -0.0019 9 6 3.2952 3.7475 -0.0006 10 6 4.1009 2.5952 0.0054 11 6 5.5284 2.7083 0.0122 12 7 6.6609 2.7979 0.0178 13 6 3.4614 1.2789 0.0006 14 6 4.2337 0.1095 0.0003 15 1 5.1398 0.0605 0.5860 16 6 3.8297 -0.9978 -0.7607 17 7 2.9934 -0.8391 -1.7521 18 14 4.4874 -2.6989 -0.3568 19 1 4.1062 -3.0600 1.0324 20 1 3.9111 -3.6895 -1.3011 21 1 5.9673 -2.6995 -0.4799 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0278 0.0005 25 1 0.2254 2.2661 -0.0014 26 1 0.1844 4.9810 -0.0015 27 1 1.7189 6.9667 -0.0009 28 1 2.6714 -1.6112 -2.2432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:13 Heat of formation + Delta-G solvation = 16.209915 kcal Electronic energy + Delta-G solvation = -16405.065640 eV Core-core repulsion = 13705.230565 eV Total energy + Delta-G solvation = -2699.835074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69529 -38.58798 -37.34979 -36.16718 -34.43859 -31.30954 -30.75530 -28.09638 -26.97882 -24.34113 -23.73054 -21.35200 -20.16281 -18.88204 -17.68243 -17.49824 -16.92426 -16.75679 -16.14904 -15.43812 -14.98225 -14.75228 -14.62791 -14.20572 -13.79431 -13.66578 -13.54178 -13.34197 -13.06045 -12.93640 -12.66548 -12.37056 -12.26766 -12.04274 -11.57978 -11.46604 -11.17905 -10.66216 -10.07335 -9.12947 -8.78150 -8.34806 -6.52282 0.07232 0.42987 0.88538 1.35023 1.38185 1.40304 1.49668 1.71379 1.97982 2.16433 2.42644 2.66173 2.85888 3.40823 3.62796 4.20445 4.38990 4.53096 4.60325 4.65401 4.80582 4.84733 4.88322 4.97843 5.18800 5.26961 5.42557 5.69510 5.82435 5.89376 6.17798 6.25980 6.55175 6.92092 7.09290 8.06670 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.008596 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.840475 B = 3256.371619 C = 4331.797821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.304 6.304 3 C 0.093 3.907 4 C -0.150 4.150 5 C -0.168 4.168 6 C -0.088 4.088 7 C -0.235 4.235 8 S 0.013 5.987 9 C -0.070 4.070 10 C -0.192 4.192 11 C 0.302 3.698 12 N -0.524 5.524 13 C 0.141 3.859 14 C -0.436 4.436 15 H 0.078 0.922 16 C 0.055 3.945 17 N -0.746 5.746 18 Si 0.975 3.025 19 H -0.255 1.255 20 H -0.254 1.254 21 H -0.270 1.270 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.106 0.894 25 H 0.141 0.859 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 0.890 1.446 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.217 6.217 3 C 0.047 3.953 4 C -0.172 4.172 5 C -0.175 4.175 6 C -0.117 4.117 7 C -0.368 4.368 8 S 0.274 5.726 9 C -0.188 4.188 10 C -0.206 4.206 11 C -0.006 4.006 12 N -0.205 5.205 13 C 0.132 3.868 14 C -0.462 4.462 15 H 0.097 0.903 16 C -0.170 4.170 17 N -0.366 5.366 18 Si 0.795 3.205 19 H -0.179 1.179 20 H -0.178 1.178 21 H -0.195 1.195 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.125 0.875 25 H 0.159 0.841 26 H 0.180 0.820 27 H 0.207 0.793 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.054 1.605 1.194 7.332 hybrid contribution -1.380 -1.267 0.021 1.873 sum -8.434 0.339 1.215 8.528 Atomic orbital electron populations 1.23136 0.79020 1.04161 1.01148 1.86176 1.20877 1.26133 1.88524 1.18396 0.91190 0.84617 1.01121 1.20520 0.99656 0.90087 1.06950 1.17828 0.90296 0.94462 1.14919 1.20009 1.01467 0.89572 1.00680 1.25024 0.93210 1.03518 1.15093 1.83937 1.10315 0.98062 1.80282 1.22375 0.96731 0.94908 1.04754 1.15816 0.82703 0.91654 1.30383 1.25696 0.92685 0.91200 0.90974 1.80965 1.12613 1.10089 1.16808 1.17932 0.89893 0.90256 0.88691 1.19706 1.07775 0.96994 1.21731 0.90346 1.26558 0.94005 1.04197 0.92230 1.69599 1.20229 1.36011 1.10723 0.85326 0.79067 0.75797 0.80292 1.17864 1.17790 1.19471 0.92306 0.93004 0.87540 0.84117 0.82029 0.79341 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.79 113.37 1.11 1.69 15 2 O -0.30 -12.33 7.38 -91.26 -0.67 -13.00 15 3 C 0.09 4.14 6.12 22.54 0.14 4.28 15 4 C -0.15 -5.88 8.97 22.55 0.20 -5.68 15 5 C -0.17 -6.71 5.87 -21.32 -0.13 -6.83 15 6 C -0.09 -2.81 10.12 21.79 0.22 -2.59 15 7 C -0.24 -7.19 11.08 66.73 0.74 -6.45 15 8 S 0.01 0.50 22.99 -56.49 -1.30 -0.80 15 9 C -0.07 -3.14 6.34 23.31 0.15 -2.99 15 10 C -0.19 -9.59 5.97 -19.35 -0.12 -9.71 15 11 C 0.30 15.54 14.22 88.33 1.26 16.80 15 12 N -0.52 -27.24 18.54 19.00 0.35 -26.88 15 13 C 0.14 7.02 5.52 -19.84 -0.11 6.91 15 14 C -0.44 -21.81 8.19 23.23 0.19 -21.62 15 15 H 0.08 4.00 7.73 -2.91 -0.02 3.98 15 16 C 0.06 2.50 4.41 85.37 0.38 2.88 15 17 N -0.75 -33.78 11.23 21.89 0.25 -33.54 15 18 Si 0.98 34.83 29.61 68.60 2.03 36.86 15 19 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 20 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 21 H -0.27 -9.92 7.11 99.48 0.71 -9.22 15 22 H 0.06 1.45 7.62 -2.39 -0.02 1.43 15 23 H 0.05 1.39 7.62 -2.39 -0.02 1.37 15 24 H 0.11 2.47 8.14 -2.38 -0.02 2.45 15 25 H 0.14 4.43 6.07 -2.91 -0.02 4.41 15 26 H 0.16 3.91 8.06 -2.91 -0.02 3.89 15 27 H 0.19 4.23 8.06 -2.91 -0.02 4.20 15 28 H 0.30 12.18 8.30 -92.70 -0.77 11.41 15 Total: -1.00 -58.37 269.27 5.90 -52.48 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.21 Total: 8.19 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 4.03 Total: -23.31 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.60 Total: -60.42 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.67 Total: -13.00 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.30 Total: -0.80 kcal Total: -58.37 5.90 -52.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.685 kcal (2) G-P(sol) polarization free energy of solvation -58.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds