Wall clock time and date at job start Mon Mar 30 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.35350 * 123.08363 * 204.16422 * 3 2 1 5 5 S 1.70003 * 112.11517 * 179.73833 * 4 3 2 6 6 C 1.75820 * 93.05907 * 0.27064 * 5 4 3 7 7 C 1.39075 * 130.24871 * 180.02562 * 6 5 4 8 8 C 1.40307 * 119.99525 * 180.02562 * 7 6 5 9 9 C 1.41067 * 120.16020 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99880 * 205.24090 * 9 8 7 11 11 C 1.39872 * 119.99721 * 25.23579 * 9 8 7 12 12 N 1.30884 * 120.00385 * 17.57682 * 11 9 8 13 13 Si 1.86803 * 119.99764 * 197.57386 * 11 9 8 14 14 H 1.48506 * 109.47072 * 60.00472 * 13 11 9 15 15 H 1.48497 * 109.47006 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47069 * 300.00222 * 13 11 9 17 17 C 1.41190 * 119.67899 * 359.88922 * 8 7 6 18 18 C 1.50703 * 119.88910 * 180.02562 * 17 8 7 19 19 O 1.42901 * 109.46582 * 180.02562 * 18 17 8 20 20 C 1.35428 * 120.21135 * 0.06744 * 17 8 7 21 21 C 1.39985 * 109.93635 * 359.97438 * 6 5 4 22 22 H 1.08001 * 123.94729 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.99869 * 359.97438 * 7 6 5 24 24 H 0.96998 * 120.00365 * 179.97438 * 12 11 9 25 25 H 1.09006 * 109.47029 * 300.01799 * 18 17 8 26 26 H 1.08998 * 109.47260 * 60.02114 * 18 17 8 27 27 H 0.96702 * 113.99420 * 179.97438 * 19 18 17 28 28 H 1.08009 * 119.61526 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3064 1.0357 0.4642 5 16 4.9755 0.7384 0.3384 6 6 4.7343 -0.8486 -0.3789 7 6 5.6625 -1.7946 -0.8007 8 6 5.2257 -3.0089 -1.3515 9 6 6.1641 -3.9706 -1.7809 10 1 5.8936 -4.6862 -2.5432 11 6 7.4449 -3.9973 -1.2193 12 7 7.6749 -3.3868 -0.0847 13 14 8.8271 -4.9044 -2.0888 14 1 9.0377 -4.3129 -3.4346 15 1 10.0758 -4.7826 -1.2943 16 1 8.4669 -6.3382 -2.2291 17 6 3.8423 -3.2642 -1.4723 18 6 3.3679 -4.5671 -2.0627 19 8 1.9392 -4.5902 -2.0793 20 6 2.9405 -2.3418 -1.0600 21 6 3.3653 -1.1127 -0.5043 22 1 2.8845 1.9426 0.8717 23 1 6.7193 -1.5941 -0.7049 24 1 8.5630 -3.4056 0.3049 25 1 3.7447 -4.6631 -3.0810 26 1 3.7377 -5.3957 -1.4588 27 1 1.5633 -5.4014 -2.4477 28 1 1.8846 -2.5470 -1.1573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214469.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:59 Heat of formation + Delta-G solvation = 4.450743 kcal Electronic energy + Delta-G solvation = -15974.550378 eV Core-core repulsion = 13274.205388 eV Total energy + Delta-G solvation = -2700.344990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.67673 -36.73623 -35.87136 -34.73406 -33.07206 -30.19044 -29.36197 -26.04977 -24.79537 -23.65030 -21.50291 -19.75411 -17.80540 -17.34309 -16.39209 -16.25603 -15.31233 -14.53042 -14.24761 -14.06646 -13.56921 -13.53574 -12.91338 -12.74322 -12.52170 -12.30069 -12.09340 -11.67240 -11.58318 -11.28629 -11.08580 -10.75169 -10.59391 -10.29099 -9.97372 -9.60741 -9.53708 -9.29992 -8.50292 -7.54228 -7.09164 -6.81564 -4.63396 1.35550 2.34958 2.40908 2.73207 2.74994 2.91378 2.92158 3.00449 3.20755 3.68951 3.90568 4.36590 4.70848 4.85878 5.23371 5.36890 5.87768 5.99936 6.18654 6.26676 6.38860 6.47562 6.70161 6.79670 7.03145 7.11047 7.39784 7.50032 7.63680 7.84728 7.97795 8.15041 8.22109 8.49737 8.54653 9.83828 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.007593 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.759345 B = 3686.700039 C = 4953.090721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.289 3.711 3 C -0.005 4.005 4 C -0.234 4.234 5 S 0.114 5.886 6 C -0.093 4.093 7 C -0.152 4.152 8 C 0.131 3.869 9 C -0.440 4.440 10 H 0.086 0.914 11 C 0.075 3.925 12 N -0.771 5.771 13 Si 0.912 3.088 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.263 1.263 17 C -0.165 4.165 18 C 0.138 3.862 19 O -0.577 6.577 20 C -0.032 4.032 21 C -0.178 4.178 22 H 0.157 0.843 23 H 0.129 0.871 24 H 0.288 0.712 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.370 0.630 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 0.444 -1.489 1.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.027 4.027 3 C -0.024 4.024 4 C -0.373 4.373 5 S 0.380 5.620 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.125 3.875 9 C -0.469 4.469 10 H 0.104 0.896 11 C -0.147 4.147 12 N -0.394 5.394 13 Si 0.736 3.264 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.167 4.167 18 C 0.061 3.939 19 O -0.381 6.381 20 C -0.052 4.052 21 C -0.184 4.184 22 H 0.174 0.826 23 H 0.146 0.854 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.215 0.785 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.867 1.992 -0.606 2.255 hybrid contribution -0.251 -1.702 -0.794 1.895 sum 0.616 0.290 -1.400 1.557 Atomic orbital electron populations 1.81124 1.12098 1.09087 1.10362 1.25430 0.92274 0.92446 0.92567 1.16027 0.84122 0.96064 1.06225 1.24558 0.99587 1.02737 1.10415 1.82523 1.00964 1.13966 1.64532 1.22276 0.96241 0.97531 1.04733 1.20525 0.97707 0.92000 1.07522 1.17160 0.89867 0.91365 0.89131 1.19598 0.95637 1.13191 1.18491 0.89572 1.25999 1.00076 0.94816 0.93792 1.69818 1.23966 1.32486 1.13155 0.86273 0.79187 0.80428 0.80514 1.18454 1.19993 1.18726 1.19223 0.93545 0.95645 1.08240 1.20682 0.78766 0.96060 0.98413 1.86475 1.21434 1.43503 1.86716 1.19883 0.98581 0.90811 0.95963 1.18162 0.90483 0.96225 1.13492 0.82562 0.85381 0.90049 0.93514 0.93005 0.78486 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.12 18.54 41.84 0.78 -8.34 15 2 C 0.29 5.67 15.42 -22.47 -0.35 5.32 15 3 C -0.01 -0.10 5.85 -105.92 -0.62 -0.72 15 4 C -0.23 -4.00 10.63 29.70 0.32 -3.69 15 5 S 0.11 2.02 22.98 -107.50 -2.47 -0.45 15 6 C -0.09 -2.05 6.43 -38.62 -0.25 -2.30 15 7 C -0.15 -3.58 8.72 -38.49 -0.34 -3.91 15 8 C 0.13 3.10 5.56 -106.93 -0.59 2.51 15 9 C -0.44 -10.03 8.47 -37.90 -0.32 -10.35 15 10 H 0.09 1.82 6.98 -52.49 -0.37 1.46 15 11 C 0.07 1.63 5.13 -17.34 -0.09 1.54 15 12 N -0.77 -17.60 10.98 55.54 0.61 -16.99 15 13 Si 0.91 16.31 29.59 -169.99 -5.03 11.28 15 14 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 15 H -0.28 -4.85 7.11 56.52 0.40 -4.45 15 16 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 17 C -0.17 -3.71 5.88 -104.50 -0.61 -4.32 15 18 C 0.14 2.58 6.22 36.01 0.22 2.80 15 19 O -0.58 -9.99 12.08 -35.23 -0.43 -10.41 15 20 C -0.03 -0.72 9.14 -39.37 -0.36 -1.08 15 21 C -0.18 -3.92 6.05 -104.95 -0.63 -4.56 15 22 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 23 H 0.13 3.08 6.17 -52.49 -0.32 2.76 15 24 H 0.29 5.98 8.30 -40.82 -0.34 5.64 15 25 H 0.05 0.82 7.79 -51.93 -0.40 0.41 15 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 27 H 0.37 4.27 9.12 45.56 0.42 4.68 15 28 H 0.11 2.43 6.90 -52.48 -0.36 2.06 15 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -26.13 270.45 -7.11 -33.24 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.02 Total: 6.36 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.62 Total: -18.76 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 1.39 Total: -25.33 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.43 Total: -10.41 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.28 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.47 Total: -0.45 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.13 -7.11 -33.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214469.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.693 kcal (2) G-P(sol) polarization free energy of solvation -26.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds