Wall clock time and date at job start Mon Mar 30 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38851 * 120.31808 * 156.15595 * 3 2 1 5 5 C 1.38310 * 120.27227 * 179.97438 * 4 3 2 6 6 C 1.37775 * 121.09493 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.32354 * 179.71818 * 6 5 4 8 8 O 1.42892 * 109.47303 * 0.02562 * 7 6 5 9 9 C 1.39455 * 121.34580 * 359.97438 * 6 5 4 10 10 S 1.76019 * 130.27265 * 180.02562 * 9 6 5 11 11 C 1.75484 * 91.74302 * 180.02562 * 10 9 6 12 12 C 1.39737 * 124.87037 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99636 * 179.97438 * 12 11 10 14 14 C 1.40326 * 120.00543 * 359.95822 * 12 11 10 15 15 N 1.30669 * 119.99694 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00441 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47136 * 60.00019 * 16 14 12 18 18 H 1.48502 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46821 * 299.99992 * 16 14 12 20 20 C 1.37273 * 110.25246 * 0.02562 * 11 10 9 21 21 C 1.39088 * 115.06617 * 359.97438 * 20 11 10 22 22 H 1.07995 * 119.86683 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.45249 * 179.97438 * 5 4 3 24 24 H 1.09003 * 109.46903 * 120.00514 * 7 6 5 25 25 H 1.08997 * 109.46729 * 239.99947 * 7 6 5 26 26 H 0.96705 * 113.99972 * 179.97438 * 8 7 6 27 27 H 0.97004 * 119.99807 * 180.02562 * 15 14 12 28 28 H 1.07999 * 122.46798 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 1.0973 -0.4845 5 6 4.6515 1.0971 -0.4836 6 6 5.3626 0.0182 -0.0055 7 6 6.8689 0.0580 -0.0292 8 8 7.3039 1.3008 -0.5843 9 6 4.7169 -1.1119 0.4951 10 16 5.3804 -2.6022 1.1562 11 6 3.7759 -3.2526 1.4426 12 6 3.5097 -4.5067 1.9986 13 1 2.4887 -4.8286 2.1405 14 6 4.5690 -5.3479 2.3721 15 7 5.8044 -4.9582 2.2005 16 14 4.2131 -7.0240 3.1160 17 1 3.4318 -7.8382 2.1506 18 1 5.4933 -7.7116 3.4221 19 1 3.4314 -6.8544 4.3672 20 6 2.8199 -2.3526 1.0422 21 6 3.3137 -1.1635 0.5159 22 1 2.7311 1.9539 -0.8637 23 1 5.1829 1.9569 -0.8640 24 1 7.2510 -0.0392 0.9870 25 1 7.2444 -0.7639 -0.6387 26 1 8.2652 1.3961 -0.6302 27 1 6.5367 -5.5398 2.4584 28 1 1.7623 -2.5526 1.1300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214487.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:31 Heat of formation + Delta-G solvation = -24.553039 kcal Electronic energy + Delta-G solvation = -15763.389200 eV Core-core repulsion = 13061.786512 eV Total energy + Delta-G solvation = -2701.602689 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12012 -37.91218 -37.27666 -36.62559 -34.93256 -32.48441 -30.90549 -27.80838 -26.86071 -24.11624 -23.02543 -20.92157 -20.48086 -18.91206 -18.15443 -17.16675 -16.61891 -16.23103 -15.86167 -15.76645 -15.30450 -14.82068 -14.60812 -14.21898 -13.82183 -13.81339 -13.57569 -13.38118 -13.08827 -13.03706 -12.63410 -12.10777 -12.03297 -11.96497 -11.73933 -11.21045 -11.05451 -11.00443 -9.93891 -9.25859 -9.03723 -8.28921 -6.65663 -0.19467 0.52148 1.30633 1.32404 1.36351 1.51216 1.68931 1.82585 1.87910 2.07120 2.10709 2.80331 3.22718 3.24619 3.41545 4.08687 4.15705 4.42882 4.58515 4.61133 4.79205 4.84148 4.97310 5.20556 5.36167 5.46919 5.58516 5.76250 5.78815 5.96322 6.16117 6.31728 6.43799 6.63620 7.01573 7.82205 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.007386 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.556009 B = 3789.876120 C = 5176.284368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.294 3.706 3 C -0.130 4.130 4 C -0.023 4.023 5 C -0.184 4.184 6 C 0.005 3.995 7 C 0.119 3.881 8 O -0.574 6.574 9 C -0.292 4.292 10 S 0.158 5.842 11 C 0.029 3.971 12 C -0.388 4.388 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.777 5.777 16 Si 1.011 2.989 17 H -0.257 1.257 18 H -0.252 1.252 19 H -0.257 1.257 20 C -0.396 4.396 21 C 0.049 3.951 22 H 0.147 0.853 23 H 0.149 0.851 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.401 0.599 27 H 0.320 0.680 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.183 1.551 -0.695 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.017 4.017 3 C -0.136 4.136 4 C -0.045 4.045 5 C -0.205 4.205 6 C 0.000 4.000 7 C 0.041 3.959 8 O -0.383 6.383 9 C -0.406 4.406 10 S 0.417 5.583 11 C -0.091 4.091 12 C -0.422 4.422 13 H 0.119 0.881 14 C -0.200 4.200 15 N -0.402 5.402 16 Si 0.829 3.171 17 H -0.181 1.181 18 H -0.176 1.176 19 H -0.181 1.181 20 C -0.420 4.420 21 C 0.039 3.961 22 H 0.165 0.835 23 H 0.166 0.834 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.251 0.749 27 H 0.134 0.866 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.464 1.069 -0.477 8.544 hybrid contribution -1.040 -0.320 0.138 1.097 sum 7.424 0.750 -0.338 7.469 Atomic orbital electron populations 1.81061 1.12905 1.10430 1.13309 1.25955 0.92870 0.91510 0.91382 1.16884 0.82819 0.98075 1.15794 1.20987 0.94500 0.95013 0.94034 1.20429 0.92519 0.99869 1.07641 1.19343 0.95227 0.91434 0.93983 1.20839 0.90079 0.86696 0.98247 1.86388 1.29428 1.36819 1.85674 1.23397 0.96584 1.04185 1.16457 1.84342 1.05575 1.03963 1.64392 1.21834 0.95687 0.96713 0.94899 1.19811 0.96578 0.97169 1.28592 0.88056 1.27281 0.93334 1.05509 0.93911 1.68546 1.01316 1.39183 1.31136 0.84747 0.79824 0.73448 0.79107 1.18085 1.17551 1.18098 1.19504 0.97483 0.98096 1.26945 1.18751 0.91974 0.91843 0.93497 0.83535 0.83367 0.91353 0.91350 0.74873 0.86557 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.65 18.54 19.00 0.35 -22.30 15 2 C 0.29 12.92 15.07 88.33 1.33 14.25 15 3 C -0.13 -5.55 5.95 -19.42 -0.12 -5.66 15 4 C -0.02 -0.81 9.72 22.43 0.22 -0.59 15 5 C -0.18 -6.34 9.30 22.18 0.21 -6.13 15 6 C 0.01 0.20 5.90 -19.68 -0.12 0.09 15 7 C 0.12 3.40 7.05 71.24 0.50 3.90 15 8 O -0.57 -13.55 12.04 -148.98 -1.79 -15.35 15 9 C -0.29 -12.86 6.30 23.10 0.15 -12.72 15 10 S 0.16 7.06 19.78 -56.49 -1.12 5.95 15 11 C 0.03 1.45 6.12 22.40 0.14 1.59 15 12 C -0.39 -18.44 9.27 23.14 0.21 -18.23 15 13 H 0.10 4.65 7.85 -2.91 -0.02 4.63 15 14 C 0.02 0.90 5.50 85.37 0.47 1.37 15 15 N -0.78 -32.25 10.58 21.90 0.23 -32.02 15 16 Si 1.01 30.86 29.56 68.60 2.03 32.89 15 17 H -0.26 -7.82 7.11 99.48 0.71 -7.11 15 18 H -0.25 -6.94 7.11 99.48 0.71 -6.23 15 19 H -0.26 -7.83 7.11 99.48 0.71 -7.12 15 20 C -0.40 -20.52 9.78 22.25 0.22 -20.30 15 21 C 0.05 2.36 6.00 -20.08 -0.12 2.24 15 22 H 0.15 4.14 8.06 -2.91 -0.02 4.12 15 23 H 0.15 4.42 6.89 -2.91 -0.02 4.40 15 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.40 4.98 9.12 -74.05 -0.68 4.30 15 27 H 0.32 11.45 8.29 -92.70 -0.77 10.68 15 28 H 0.09 4.70 8.02 -2.91 -0.02 4.68 15 Total: -1.00 -58.34 272.30 3.34 -55.00 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.55 Total: 16.02 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 3.09 Total: -40.20 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.58 Total: -54.31 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.79 Total: -15.35 kcal Atomic # 14 Polarization: 30.86 SS G_CDS: 2.03 Total: 32.89 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.12 Total: 5.95 kcal Total: -58.34 3.34 -55.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214487.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.449 kcal (2) G-P(sol) polarization free energy of solvation -58.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds