Wall clock time and date at job start Mon Mar 30 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38014 * 120.12672 * 252.91944 * 3 2 1 5 5 C 1.40753 * 120.05032 * 180.02562 * 4 3 2 6 6 C 1.41105 * 119.79924 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00149 * 205.15589 * 6 5 4 8 8 C 1.39848 * 119.99865 * 25.16238 * 6 5 4 9 9 N 1.30906 * 120.00015 * 18.13932 * 8 6 5 10 10 Si 1.86796 * 120.00131 * 198.13615 * 8 6 5 11 11 H 1.48502 * 109.46858 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47195 * 120.00071 * 10 8 6 13 13 H 1.48504 * 109.47131 * 240.00298 * 10 8 6 14 14 C 1.40307 * 120.40119 * 359.42982 * 5 4 3 15 15 C 1.38732 * 121.00720 * 0.89609 * 14 5 4 16 16 S 1.76093 * 130.43865 * 179.09397 * 15 14 5 17 17 C 1.75488 * 91.52493 * 179.97438 * 16 15 14 18 18 C 1.32772 * 110.75676 * 359.97438 * 17 16 15 19 19 C 1.50697 * 122.04881 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47394 * 0.03056 * 19 18 17 21 21 C 1.39932 * 115.89958 * 0.27216 * 18 17 16 22 22 H 1.08000 * 119.97562 * 0.02786 * 4 3 2 23 23 H 0.97003 * 119.99708 * 180.02562 * 9 8 6 24 24 H 1.07999 * 119.49232 * 179.97438 * 14 5 4 25 25 H 1.07994 * 124.61970 * 179.97438 * 17 16 15 26 26 H 1.09003 * 109.47810 * 240.02700 * 19 18 17 27 27 H 1.09003 * 109.47201 * 120.02982 * 19 18 17 28 28 H 0.96698 * 114.00559 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2606 0.3516 1.1411 5 6 4.6681 0.3522 1.1391 6 6 5.3708 0.7124 2.3085 7 1 6.3736 1.1069 2.2360 8 6 4.7688 0.5584 3.5614 9 7 3.7303 -0.2270 3.6964 10 14 5.4468 1.4732 5.0421 11 1 6.6162 2.2891 4.6271 12 1 4.3953 2.3617 5.5991 13 1 5.8684 0.4957 6.0775 14 6 5.3767 -0.0142 -0.0151 15 6 4.7114 -0.3659 -1.1807 16 16 5.3398 -0.8392 -2.7561 17 6 3.7177 -1.0348 -3.3965 18 6 2.8090 -0.7576 -2.4690 19 6 1.3304 -0.8435 -2.7472 20 8 1.1233 -1.2512 -4.1011 21 6 3.3085 -0.3746 -1.2192 22 1 2.7221 0.6259 2.0362 23 1 3.3125 -0.3335 4.5654 24 1 6.4566 -0.0082 -0.0005 25 1 3.4897 -1.3392 -4.4073 26 1 0.8733 0.1332 -2.5879 27 1 0.8759 -1.5713 -2.0750 28 1 0.1923 -1.3273 -4.3509 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214996.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:30 Heat of formation + Delta-G solvation = 9.255219 kcal Electronic energy + Delta-G solvation = -15978.247227 eV Core-core repulsion = 13278.110575 eV Total energy + Delta-G solvation = -2700.136653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80671 -36.85211 -35.82520 -35.03913 -33.05161 -30.38489 -29.18667 -26.44635 -25.50313 -22.67133 -21.86240 -18.96608 -18.84753 -17.40223 -16.55867 -15.65700 -15.29883 -14.90052 -14.78186 -14.33313 -13.57642 -13.44725 -13.20275 -12.47350 -12.40568 -12.31911 -12.18602 -11.70092 -11.58204 -11.34039 -11.16356 -10.88906 -10.44206 -10.30937 -10.19518 -9.88119 -9.83109 -9.36295 -8.55180 -7.58645 -7.29680 -6.90357 -4.72283 1.35869 2.20295 2.44107 2.73495 2.82455 2.88056 2.93569 3.16161 3.30263 3.62336 3.67962 4.30189 4.43561 4.74939 5.15475 5.48688 5.65356 5.74499 5.80404 6.14223 6.35640 6.51135 6.66792 6.73566 6.81902 6.92309 7.30350 7.37053 7.43444 7.60426 7.77390 7.99169 8.15396 8.31835 8.38265 9.68444 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.006695 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.765128 B = 4181.410569 C = 5178.803065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.281 3.719 3 C -0.010 4.010 4 C -0.059 4.059 5 C 0.119 3.881 6 C -0.426 4.426 7 H 0.094 0.906 8 C 0.070 3.930 9 N -0.775 5.775 10 Si 0.918 3.082 11 H -0.255 1.255 12 H -0.268 1.268 13 H -0.270 1.270 14 C -0.203 4.203 15 C -0.057 4.057 16 S 0.020 5.980 17 C -0.228 4.228 18 C -0.060 4.060 19 C 0.136 3.864 20 O -0.569 6.569 21 C -0.165 4.165 22 H 0.136 0.864 23 H 0.291 0.709 24 H 0.106 0.894 25 H 0.156 0.844 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 0.478 -3.903 3.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.032 4.032 3 C -0.016 4.016 4 C -0.081 4.081 5 C 0.113 3.887 6 C -0.455 4.455 7 H 0.112 0.888 8 C -0.151 4.151 9 N -0.398 5.398 10 Si 0.741 3.259 11 H -0.178 1.178 12 H -0.192 1.192 13 H -0.195 1.195 14 C -0.230 4.230 15 C -0.172 4.172 16 S 0.283 5.717 17 C -0.361 4.361 18 C -0.072 4.072 19 C 0.056 3.944 20 O -0.374 6.374 21 C -0.173 4.173 22 H 0.154 0.846 23 H 0.103 0.897 24 H 0.124 0.876 25 H 0.174 0.826 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.581 0.160 -4.424 4.465 hybrid contribution -1.373 0.391 1.321 1.945 sum -0.792 0.550 -3.103 3.249 Atomic orbital electron populations 1.81096 1.12254 1.11236 1.09621 1.26054 0.93045 0.92236 0.91840 1.16685 0.82533 1.07845 0.94523 1.21533 0.94936 0.96868 0.94802 1.17255 0.90727 0.88426 0.92285 1.19791 1.01916 1.34087 0.89658 0.88847 1.26119 0.94123 0.93283 1.01610 1.69794 1.17305 1.25400 1.27315 0.86066 0.80300 0.80006 0.79510 1.17838 1.19244 1.19498 1.20186 0.98080 1.12525 0.92192 1.22004 0.94880 1.03728 0.96636 1.83682 1.08604 1.74535 1.04900 1.24390 0.93892 1.14609 1.03228 1.18177 0.94077 1.01965 0.92981 1.20700 0.93092 0.98122 0.82481 1.86431 1.30478 1.91554 1.28949 1.17913 0.91483 1.15685 0.92194 0.84599 0.89749 0.87562 0.82628 0.92934 0.92914 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.60 18.52 41.84 0.78 -8.82 15 2 C 0.28 5.84 12.47 -22.47 -0.28 5.56 15 3 C -0.01 -0.21 5.93 -104.28 -0.62 -0.83 15 4 C -0.06 -1.33 8.31 -38.71 -0.32 -1.65 15 5 C 0.12 2.73 5.55 -107.08 -0.59 2.13 15 6 C -0.43 -9.48 9.00 -37.89 -0.34 -9.82 15 7 H 0.09 1.97 7.91 -52.49 -0.42 1.55 15 8 C 0.07 1.48 5.11 -17.34 -0.09 1.39 15 9 N -0.78 -17.18 10.98 55.54 0.61 -16.57 15 10 Si 0.92 15.94 29.60 -169.99 -5.03 10.90 15 11 H -0.26 -4.38 7.11 56.52 0.40 -3.98 15 12 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 13 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 14 C -0.20 -4.45 9.73 -38.62 -0.38 -4.82 15 15 C -0.06 -1.23 6.46 -38.60 -0.25 -1.48 15 16 S 0.02 0.37 23.29 -107.50 -2.50 -2.14 15 17 C -0.23 -4.31 10.33 28.86 0.30 -4.01 15 18 C -0.06 -1.20 5.81 -105.86 -0.62 -1.82 15 19 C 0.14 2.38 5.86 36.00 0.21 2.59 15 20 O -0.57 -8.71 12.45 -35.23 -0.44 -9.15 15 21 C -0.16 -3.56 6.02 -104.70 -0.63 -4.19 15 22 H 0.14 3.11 6.16 -52.49 -0.32 2.78 15 23 H 0.29 5.84 8.30 -40.82 -0.34 5.50 15 24 H 0.11 2.18 8.06 -52.49 -0.42 1.76 15 25 H 0.16 2.73 7.40 -52.49 -0.39 2.34 15 26 H 0.05 0.92 7.55 -51.93 -0.39 0.53 15 27 H 0.05 0.94 7.59 -51.93 -0.39 0.54 15 28 H 0.38 3.81 9.12 45.56 0.42 4.22 15 LS Contribution 268.82 15.07 4.05 4.05 Total: -1.00 -24.74 268.82 -7.20 -31.93 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.05 Total: 6.74 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.60 Total: -16.95 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 1.38 Total: -25.39 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.44 Total: -9.15 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.90 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.50 Total: -2.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.74 -7.20 -31.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214996.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.189 kcal (2) G-P(sol) polarization free energy of solvation -24.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds