Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39299 * 119.96584 * 220.77082 * 3 2 1 5 5 C 1.38466 * 120.06220 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.63268 * 180.28706 * 5 4 3 7 7 O 1.42902 * 109.46582 * 269.72348 * 6 5 4 8 8 C 1.37175 * 120.73596 * 0.02562 * 5 4 3 9 9 C 1.41868 * 120.70865 * 0.02562 * 8 5 4 10 10 C 1.39848 * 128.45673 * 180.02562 * 9 8 5 11 11 C 1.36921 * 115.03376 * 179.97438 * 10 9 8 12 12 C 1.39898 * 124.83265 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99966 * 0.02689 * 12 11 10 14 14 C 1.40208 * 120.00099 * 180.02562 * 12 11 10 15 15 N 1.30738 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46776 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46825 * 119.99735 * 16 14 12 19 19 H 1.48496 * 109.46915 * 240.00174 * 16 14 12 20 20 S 1.75460 * 110.34018 * 359.97438 * 11 10 9 21 21 C 1.40293 * 118.68235 * 0.02562 * 9 8 5 22 22 H 1.08001 * 119.96892 * 0.02562 * 4 3 2 23 23 H 1.08996 * 109.47470 * 29.72106 * 6 5 4 24 24 H 1.09003 * 109.47512 * 149.72991 * 6 5 4 25 25 H 0.96708 * 113.99936 * 179.97438 * 7 6 5 26 26 H 1.08002 * 119.64350 * 180.02562 * 8 5 4 27 27 H 1.08004 * 122.48894 * 359.95370 * 10 9 8 28 28 H 0.97000 * 120.00539 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2634 0.9149 0.7881 5 6 4.6481 0.9176 0.7892 6 6 5.3906 1.9066 1.6504 7 8 5.6299 3.1019 0.9047 8 6 5.3515 0.0266 0.0192 9 6 4.6759 -0.9176 -0.7962 10 6 5.2247 -1.8912 -1.6368 11 6 4.3109 -2.6633 -2.3029 12 6 4.6329 -3.6935 -3.1929 13 1 5.6674 -3.9281 -3.3959 14 6 3.6126 -4.4214 -3.8214 15 7 2.3603 -4.1377 -3.5754 16 14 4.0425 -5.7974 -5.0094 17 1 5.5190 -5.9177 -5.1139 18 1 3.4751 -7.0763 -4.5116 19 1 3.4754 -5.4916 -6.3472 20 16 2.6787 -2.1768 -1.8813 21 6 3.2730 -0.9220 -0.8001 22 1 2.7220 1.6222 1.3988 23 1 4.7933 2.1415 2.5314 24 1 6.3423 1.4755 1.9609 25 1 6.1048 3.7848 1.3980 26 1 6.4313 0.0440 0.0338 27 1 6.2902 -2.0241 -1.7524 28 1 1.6544 -4.6409 -4.0104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396215016.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = -8.804563 kcal Electronic energy + Delta-G solvation = -15617.793210 eV Core-core repulsion = 12916.873426 eV Total energy + Delta-G solvation = -2700.919784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.79806 -36.58604 -35.99515 -34.93405 -33.32623 -30.92067 -29.42861 -26.09994 -25.22484 -22.94996 -21.88743 -19.14003 -18.36467 -17.25383 -17.02864 -16.11053 -15.50579 -15.00519 -14.06720 -13.99750 -13.65772 -13.44508 -12.98948 -12.63949 -12.53012 -12.20611 -12.00568 -11.81059 -11.64567 -11.56320 -11.16041 -10.64125 -10.47668 -10.44337 -10.17554 -9.87947 -9.49561 -9.22326 -8.58867 -7.61209 -7.31928 -6.60185 -4.82961 1.44552 1.99898 2.65072 2.78632 2.86685 3.03426 3.15703 3.26168 3.48088 3.66943 3.83058 4.39859 4.59248 4.74825 5.00046 5.34291 5.39555 5.65477 5.75191 5.95480 6.39538 6.46678 6.54008 6.78870 6.86498 7.10254 7.17824 7.31055 7.54737 7.69090 7.78100 7.83391 8.07858 8.14205 8.26291 9.52239 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.006066 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.362470 B = 4614.635988 C = 5533.762635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.271 3.729 3 C 0.019 3.981 4 C -0.120 4.120 5 C -0.093 4.093 6 C 0.125 3.875 7 O -0.567 6.567 8 C -0.099 4.099 9 C 0.017 3.983 10 C -0.362 4.362 11 C 0.053 3.947 12 C -0.377 4.377 13 H 0.103 0.897 14 C 0.052 3.948 15 N -0.773 5.773 16 Si 0.940 3.060 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.266 1.266 20 S 0.156 5.844 21 C -0.223 4.223 22 H 0.115 0.885 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.371 0.629 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 3.200 4.052 7.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.043 4.043 3 C 0.010 3.990 4 C -0.143 4.143 5 C -0.096 4.096 6 C 0.048 3.952 7 O -0.372 6.372 8 C -0.120 4.120 9 C 0.009 3.991 10 C -0.386 4.386 11 C -0.066 4.066 12 C -0.410 4.410 13 H 0.121 0.879 14 C -0.170 4.170 15 N -0.398 5.398 16 Si 0.763 3.237 17 H -0.177 1.177 18 H -0.191 1.191 19 H -0.191 1.191 20 S 0.417 5.583 21 C -0.340 4.340 22 H 0.133 0.867 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.217 0.783 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.391 2.252 3.078 4.060 hybrid contribution 2.271 0.210 0.367 2.310 sum 3.661 2.463 3.445 5.598 Atomic orbital electron populations 1.81096 1.12227 1.09422 1.09635 1.26012 0.92984 0.92643 0.92709 1.15164 0.82853 0.99446 1.01509 1.20306 0.93167 0.99305 1.01506 1.18783 0.92810 0.97363 1.00607 1.20938 0.97654 0.84364 0.92254 1.86648 1.80217 1.26768 1.43571 1.20837 0.98432 0.95767 0.96969 1.17888 0.90871 0.94936 0.95411 1.19560 0.98296 1.07275 1.13493 1.21471 0.94136 0.95669 0.95372 1.19430 0.95588 1.09494 1.16520 0.87906 1.26389 0.94087 0.99156 0.97407 1.68551 1.00973 1.35601 1.34706 0.85675 0.80572 0.78655 0.78813 1.17727 1.19126 1.19121 1.85192 1.07076 1.26413 1.39590 1.23807 0.97553 1.05517 1.07151 0.86720 0.93310 0.93189 0.78262 0.87131 0.86995 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.67 18.54 41.84 0.78 -8.89 15 2 C 0.27 5.69 15.05 -22.47 -0.34 5.36 15 3 C 0.02 0.39 5.76 -106.53 -0.61 -0.22 15 4 C -0.12 -2.20 9.38 -39.10 -0.37 -2.57 15 5 C -0.09 -1.64 5.48 -104.92 -0.57 -2.22 15 6 C 0.13 1.67 7.15 36.01 0.26 1.93 15 7 O -0.57 -7.73 13.64 -35.23 -0.48 -8.21 15 8 C -0.10 -1.93 9.69 -38.58 -0.37 -2.31 15 9 C 0.02 0.39 5.85 -107.13 -0.63 -0.24 15 10 C -0.36 -8.55 10.14 -39.46 -0.40 -8.95 15 11 C 0.05 1.31 6.11 -39.44 -0.24 1.07 15 12 C -0.38 -8.84 9.27 -38.22 -0.35 -9.20 15 13 H 0.10 2.25 7.85 -52.49 -0.41 1.84 15 14 C 0.05 1.13 5.50 -17.28 -0.10 1.04 15 15 N -0.77 -17.64 10.58 55.56 0.59 -17.05 15 16 Si 0.94 16.25 29.56 -169.99 -5.03 11.23 15 17 H -0.25 -4.30 7.11 56.52 0.40 -3.90 15 18 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 19 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 20 S 0.16 3.78 19.81 -107.50 -2.13 1.65 15 21 C -0.22 -5.13 6.34 -37.76 -0.24 -5.37 15 22 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 23 H 0.05 0.55 8.08 -51.93 -0.42 0.13 15 24 H 0.05 0.58 8.07 -51.93 -0.42 0.16 15 25 H 0.37 2.91 9.12 45.56 0.42 3.32 15 26 H 0.11 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.11 2.49 8.06 -52.48 -0.42 2.07 15 28 H 0.30 6.21 8.29 -40.82 -0.34 5.87 15 LS Contribution 274.75 15.07 4.14 4.14 Total: -1.00 -27.40 274.75 -7.34 -34.74 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -1.24 Total: 4.08 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -3.97 Total: -21.69 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 1.36 Total: -25.94 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.48 Total: -8.21 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.13 Total: 1.65 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.40 -7.34 -34.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215016.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.936 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds