Wall clock time and date at job start Mon Mar 30 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39299 * 119.96584 * 220.77082 * 3 2 1 5 5 C 1.38466 * 120.06220 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.63268 * 180.28706 * 5 4 3 7 7 O 1.42902 * 109.46582 * 269.72348 * 6 5 4 8 8 C 1.37175 * 120.73596 * 0.02562 * 5 4 3 9 9 C 1.41868 * 120.70865 * 0.02562 * 8 5 4 10 10 C 1.39848 * 128.45673 * 180.02562 * 9 8 5 11 11 C 1.36921 * 115.03376 * 179.97438 * 10 9 8 12 12 C 1.39898 * 124.83265 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99966 * 0.02689 * 12 11 10 14 14 C 1.40208 * 120.00099 * 180.02562 * 12 11 10 15 15 N 1.30738 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46776 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46825 * 119.99735 * 16 14 12 19 19 H 1.48496 * 109.46915 * 240.00174 * 16 14 12 20 20 S 1.75460 * 110.34018 * 359.97438 * 11 10 9 21 21 C 1.40293 * 118.68235 * 0.02562 * 9 8 5 22 22 H 1.08001 * 119.96892 * 0.02562 * 4 3 2 23 23 H 1.08996 * 109.47470 * 29.72106 * 6 5 4 24 24 H 1.09003 * 109.47512 * 149.72991 * 6 5 4 25 25 H 0.96708 * 113.99936 * 179.97438 * 7 6 5 26 26 H 1.08002 * 119.64350 * 180.02562 * 8 5 4 27 27 H 1.08004 * 122.48894 * 359.95370 * 10 9 8 28 28 H 0.97000 * 120.00539 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2634 0.9149 0.7881 5 6 4.6481 0.9176 0.7892 6 6 5.3906 1.9066 1.6504 7 8 5.6299 3.1019 0.9047 8 6 5.3515 0.0266 0.0192 9 6 4.6759 -0.9176 -0.7962 10 6 5.2247 -1.8912 -1.6368 11 6 4.3109 -2.6633 -2.3029 12 6 4.6329 -3.6935 -3.1929 13 1 5.6674 -3.9281 -3.3959 14 6 3.6126 -4.4214 -3.8214 15 7 2.3603 -4.1377 -3.5754 16 14 4.0425 -5.7974 -5.0094 17 1 5.5190 -5.9177 -5.1139 18 1 3.4751 -7.0763 -4.5116 19 1 3.4754 -5.4916 -6.3472 20 16 2.6787 -2.1768 -1.8813 21 6 3.2730 -0.9220 -0.8001 22 1 2.7220 1.6222 1.3988 23 1 4.7933 2.1415 2.5314 24 1 6.3423 1.4755 1.9609 25 1 6.1048 3.7848 1.3980 26 1 6.4313 0.0440 0.0338 27 1 6.2902 -2.0241 -1.7524 28 1 1.6544 -4.6409 -4.0104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215016.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:47 Heat of formation + Delta-G solvation = -25.259747 kcal Electronic energy + Delta-G solvation = -15618.506760 eV Core-core repulsion = 12916.873426 eV Total energy + Delta-G solvation = -2701.633334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34941 -37.79817 -37.63009 -36.53835 -34.92128 -32.43124 -31.09548 -27.62702 -26.63966 -24.55778 -23.50965 -20.69915 -20.11016 -18.66207 -18.21308 -17.72270 -17.09067 -16.39639 -15.67497 -15.40734 -15.11593 -14.88300 -14.56530 -14.17761 -14.06112 -13.89582 -13.53993 -13.41701 -13.16853 -13.11696 -12.56917 -12.13299 -12.00905 -11.95610 -11.75215 -11.09665 -11.01183 -10.81692 -10.23339 -9.31254 -8.95460 -8.38706 -6.58883 -0.16308 0.37972 1.17848 1.27202 1.35788 1.55620 1.58234 1.64253 1.82354 2.11384 2.16490 2.82483 2.97494 3.16584 3.76726 4.19550 4.21854 4.42715 4.46763 4.65125 4.85038 4.88032 4.90665 5.20613 5.29053 5.43397 5.54530 5.69445 5.87776 6.01105 6.15175 6.40464 6.44115 6.52002 7.08989 7.91722 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.006066 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.362470 B = 4614.635988 C = 5533.762635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.279 3.721 3 C 0.001 3.999 4 C -0.099 4.099 5 C -0.091 4.091 6 C 0.128 3.872 7 O -0.590 6.590 8 C -0.097 4.097 9 C -0.004 4.004 10 C -0.382 4.382 11 C 0.028 3.972 12 C -0.408 4.408 13 H 0.110 0.890 14 C 0.016 3.984 15 N -0.803 5.803 16 Si 1.013 2.987 17 H -0.248 1.248 18 H -0.260 1.260 19 H -0.261 1.261 20 S 0.113 5.887 21 C -0.242 4.242 22 H 0.148 0.852 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.398 0.602 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 4.315 5.148 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.035 4.035 3 C -0.007 4.007 4 C -0.121 4.121 5 C -0.093 4.093 6 C 0.051 3.949 7 O -0.399 6.399 8 C -0.117 4.117 9 C -0.012 4.012 10 C -0.406 4.406 11 C -0.091 4.091 12 C -0.441 4.441 13 H 0.128 0.872 14 C -0.203 4.203 15 N -0.429 5.429 16 Si 0.831 3.169 17 H -0.170 1.170 18 H -0.185 1.185 19 H -0.186 1.186 20 S 0.374 5.626 21 C -0.359 4.359 22 H 0.166 0.834 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.249 0.751 26 H 0.150 0.850 27 H 0.134 0.866 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.563 3.405 4.204 5.987 hybrid contribution 1.949 0.073 0.187 1.959 sum 4.511 3.479 4.392 7.193 Atomic orbital electron populations 1.81091 1.12590 1.10012 1.10261 1.26072 0.93009 0.92186 0.92248 1.15356 0.82756 1.00187 1.02420 1.20814 0.93833 0.97878 0.99621 1.19361 0.92818 0.97444 0.99723 1.20961 0.98744 0.83603 0.91592 1.86556 1.80985 1.27506 1.44893 1.21182 0.99737 0.94846 0.95977 1.18135 0.90999 0.95788 0.96278 1.19743 0.98413 1.08088 1.14367 1.21767 0.94124 0.96728 0.96442 1.19761 0.96535 1.10290 1.17490 0.87238 1.27350 0.93501 1.00993 0.98449 1.68627 1.02011 1.36664 1.35571 0.84636 0.80533 0.75347 0.76344 1.17048 1.18473 1.18566 1.85064 1.08214 1.28142 1.41189 1.23854 0.98060 1.06057 1.07967 0.83426 0.90430 0.90913 0.75143 0.84955 0.86551 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.91 18.54 19.00 0.35 -19.56 15 2 C 0.28 11.63 15.05 88.33 1.33 12.96 15 3 C 0.00 0.06 5.76 -21.10 -0.12 -0.06 15 4 C -0.10 -3.34 9.38 22.58 0.21 -3.13 15 5 C -0.09 -2.90 5.48 -20.06 -0.11 -3.01 15 6 C 0.13 2.78 7.15 71.24 0.51 3.29 15 7 O -0.59 -13.40 13.64 -148.98 -2.03 -15.43 15 8 C -0.10 -3.58 9.69 22.92 0.22 -3.36 15 9 C 0.00 -0.19 5.85 -21.49 -0.13 -0.32 15 10 C -0.38 -18.60 10.14 22.35 0.23 -18.37 15 11 C 0.03 1.47 6.11 22.36 0.14 1.60 15 12 C -0.41 -19.82 9.27 23.15 0.21 -19.61 15 13 H 0.11 4.95 7.85 -2.91 -0.02 4.93 15 14 C 0.02 0.70 5.50 85.33 0.47 1.17 15 15 N -0.80 -37.85 10.58 21.88 0.23 -37.62 15 16 Si 1.01 33.22 29.56 68.60 2.03 35.25 15 17 H -0.25 -7.76 7.11 99.48 0.71 -7.06 15 18 H -0.26 -8.21 7.11 99.48 0.71 -7.51 15 19 H -0.26 -8.28 7.11 99.48 0.71 -7.57 15 20 S 0.11 5.75 19.81 -56.49 -1.12 4.63 15 21 C -0.24 -11.33 6.34 23.45 0.15 -11.18 15 22 H 0.15 4.02 8.06 -2.91 -0.02 4.00 15 23 H 0.08 1.29 8.08 -2.39 -0.02 1.27 15 24 H 0.07 1.29 8.07 -2.39 -0.02 1.27 15 25 H 0.40 4.35 9.12 -74.05 -0.68 3.68 15 26 H 0.13 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.12 5.34 8.06 -2.91 -0.02 5.31 15 28 H 0.31 13.07 8.29 -92.71 -0.77 12.30 15 Total: -1.00 -61.01 274.75 3.12 -57.90 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.54 Total: 14.85 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 3.11 Total: -40.01 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.58 Total: -57.18 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -2.03 Total: -15.43 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.12 Total: 4.63 kcal Total: -61.01 3.12 -57.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215016.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.636 kcal (2) G-P(sol) polarization free energy of solvation -61.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds