Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.41951 * 120.01467 * 262.86304 * 3 2 1 5 5 C 1.46332 * 129.54181 * 0.02562 * 4 3 2 6 6 C 1.40921 * 123.29243 * 0.28987 * 5 4 3 7 7 H 1.07995 * 120.00534 * 25.53117 * 6 5 4 8 8 C 1.39699 * 119.99516 * 205.53281 * 6 5 4 9 9 N 1.31073 * 120.00567 * 9.94217 * 8 6 5 10 10 Si 1.86804 * 119.99452 * 189.94038 * 8 6 5 11 11 H 1.48493 * 109.47440 * 60.00352 * 10 8 6 12 12 H 1.48506 * 109.46742 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47146 * 299.99552 * 10 8 6 14 14 C 1.36594 * 113.41775 * 180.26242 * 5 4 3 15 15 S 1.69992 * 111.88551 * 0.02562 * 14 5 4 16 16 C 1.39227 * 119.13192 * 180.29126 * 4 3 2 17 17 C 1.39845 * 119.70151 * 359.73479 * 16 4 3 18 18 C 1.37809 * 120.71597 * 0.02562 * 17 16 4 19 19 C 1.38231 * 120.39456 * 359.97078 * 18 17 16 20 20 C 1.50697 * 119.95805 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47494 * 0.02562 * 20 19 18 22 22 H 0.97000 * 120.00231 * 179.97438 * 9 8 6 23 23 H 1.07998 * 124.05810 * 179.97438 * 14 5 4 24 24 H 1.08001 * 119.64120 * 179.97438 * 17 16 4 25 25 H 1.08003 * 119.80267 * 180.02562 * 18 17 16 26 26 H 1.09004 * 109.47107 * 240.00011 * 20 19 18 27 27 H 1.08998 * 109.46888 * 120.00414 * 20 19 18 28 28 H 0.96690 * 114.00089 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2780 0.1537 1.2196 5 6 2.7668 0.3233 2.5802 6 6 1.3929 0.3551 2.8920 7 1 0.6810 -0.1371 2.2461 8 6 0.9518 1.0234 4.0367 9 7 1.7799 1.7816 4.7131 10 14 -0.8184 0.8366 4.6034 11 1 -1.0972 -0.5929 4.8928 12 1 -1.0321 1.6418 5.8327 13 1 -1.7330 1.3130 3.5349 14 6 3.7516 0.4472 3.5186 15 16 5.3015 0.3681 2.8249 16 6 4.6701 0.1578 1.1976 17 6 5.3443 0.0063 -0.0182 18 6 4.6457 -0.1466 -1.1962 19 6 3.2634 -0.1532 -1.1938 20 6 2.5094 -0.3217 -2.4876 21 8 3.4374 -0.4550 -3.5660 22 1 1.4735 2.2459 5.5077 23 1 3.5677 0.5803 4.5745 24 1 6.4242 0.0100 -0.0343 25 1 5.1814 -0.2629 -2.1268 26 1 1.8783 0.5508 -2.6566 27 1 1.8871 -1.2149 -2.4318 28 1 3.0212 -0.5677 -4.4314 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = -6.850637 kcal Electronic energy + Delta-G solvation = -16133.143088 eV Core-core repulsion = 13432.308033 eV Total energy + Delta-G solvation = -2700.835055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78315 -37.94940 -37.40902 -36.56022 -34.20955 -32.61493 -30.29196 -28.38276 -26.77746 -24.54794 -23.37303 -20.98601 -20.24137 -18.71943 -18.18221 -17.40821 -16.74738 -16.08583 -16.07532 -15.93886 -15.38294 -14.85245 -14.73840 -14.19302 -13.95227 -13.89068 -13.70754 -13.36442 -13.11313 -12.75124 -12.68343 -12.30520 -12.15609 -11.76699 -11.74602 -11.31332 -11.18335 -10.89417 -10.17620 -9.13914 -8.66386 -8.48162 -6.32538 -0.31066 0.19563 1.08437 1.19972 1.26249 1.36437 1.70762 1.84964 1.90716 1.99373 2.15117 2.80692 3.02028 3.17113 3.28985 3.93191 4.08294 4.29867 4.39184 4.48688 4.51411 4.79508 4.97424 5.14350 5.18768 5.35029 5.46076 5.61751 5.88148 5.94230 6.42106 6.53053 6.78399 6.87806 6.94821 8.34837 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.008541 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.984080 B = 3277.499354 C = 4604.298760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.285 3.715 3 C -0.019 4.019 4 C -0.053 4.053 5 C 0.045 3.955 6 C -0.472 4.472 7 H 0.069 0.931 8 C 0.034 3.966 9 N -0.829 5.829 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.260 1.260 13 H -0.273 1.273 14 C -0.362 4.362 15 S 0.096 5.904 16 C -0.162 4.162 17 C -0.049 4.049 18 C -0.094 4.094 19 C -0.046 4.046 20 C 0.124 3.876 21 O -0.569 6.569 22 H 0.283 0.717 23 H 0.137 0.863 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -3.119 -11.776 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.029 4.029 3 C -0.025 4.025 4 C -0.065 4.065 5 C 0.036 3.964 6 C -0.505 4.505 7 H 0.087 0.913 8 C -0.180 4.180 9 N -0.456 5.456 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.184 1.184 13 H -0.198 1.198 14 C -0.498 4.498 15 S 0.360 5.640 16 C -0.277 4.277 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.052 4.052 20 C 0.046 3.954 21 O -0.378 6.378 22 H 0.094 0.906 23 H 0.154 0.846 24 H 0.180 0.820 25 H 0.189 0.811 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.153 -2.793 -10.349 12.360 hybrid contribution -2.627 0.097 0.145 2.633 sum 3.526 -2.696 -10.204 11.127 Atomic orbital electron populations 1.81061 1.12799 1.10326 1.09600 1.25716 0.92936 0.92722 0.91502 1.15593 0.83506 1.10121 0.93251 1.19559 0.93078 1.00973 0.92933 1.17654 0.94621 0.95938 0.88184 1.19277 0.92367 1.30768 1.08119 0.91263 1.26404 1.03096 0.92770 0.95697 1.69897 1.37999 1.22259 1.15484 0.85525 0.77956 0.79601 0.78402 1.18622 1.18399 1.19767 1.24375 0.94922 1.27766 1.02711 1.81498 1.08355 1.78910 0.95227 1.22920 0.95693 1.09236 0.99879 1.21103 1.01186 0.96324 0.88689 1.20912 0.92047 0.99788 0.98671 1.19690 0.95191 0.98522 0.91809 1.20704 0.89874 1.00867 0.83906 1.86344 1.35997 1.96488 1.18987 0.90607 0.84555 0.82014 0.81076 0.91629 0.91391 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.69 17.83 19.00 0.34 -20.35 15 2 C 0.28 12.19 11.83 88.33 1.05 13.23 15 3 C -0.02 -0.78 5.78 -20.93 -0.12 -0.90 15 4 C -0.05 -2.42 6.01 -20.02 -0.12 -2.54 15 5 C 0.05 2.43 5.66 -20.90 -0.12 2.32 15 6 C -0.47 -26.51 8.37 23.28 0.19 -26.31 15 7 H 0.07 3.88 5.36 -2.91 -0.02 3.87 15 8 C 0.03 1.81 5.36 85.16 0.46 2.26 15 9 N -0.83 -45.36 10.92 21.79 0.24 -45.12 15 10 Si 0.96 42.48 29.57 68.60 2.03 44.51 15 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 12 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 14 C -0.36 -18.82 9.49 67.44 0.64 -18.18 15 15 S 0.10 3.93 22.96 -56.49 -1.30 2.63 15 16 C -0.16 -6.36 6.44 22.90 0.15 -6.21 15 17 C -0.05 -1.44 10.05 22.56 0.23 -1.22 15 18 C -0.09 -2.51 9.34 22.17 0.21 -2.30 15 19 C -0.05 -1.41 5.90 -19.68 -0.12 -1.53 15 20 C 0.12 2.86 6.42 71.24 0.46 3.31 15 21 O -0.57 -9.99 12.13 -148.98 -1.81 -11.80 15 22 H 0.28 14.23 8.30 -92.71 -0.77 13.46 15 23 H 0.14 7.69 6.45 -2.91 -0.02 7.67 15 24 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 25 H 0.17 3.54 6.99 -2.91 -0.02 3.52 15 26 H 0.07 1.47 8.13 -2.39 -0.02 1.45 15 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.40 2.98 9.12 -74.06 -0.68 2.31 15 Total: -1.00 -65.97 265.93 2.96 -63.01 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.56 Total: 5.18 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.90 Total: -38.06 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.58 Total: -65.48 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.81 Total: -11.80 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.30 Total: 2.63 kcal Total: -65.97 2.96 -63.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.162 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds